BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00041184
         (1745 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   491   e-153
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   486   e-153
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         483   e-152
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         483   e-152
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         481   e-152
gb|ANK58536.1| polyprotein [Fig badnavirus 1]                         481   e-151
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         483   e-151
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962...   477   e-150
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   484   e-150
ref|XP_020676930.1| uncharacterized protein LOC110095647 [Dendro...   432   e-142
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   409   e-136
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   409   e-133
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               410   e-132
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] >gi|347...   409   e-132
gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]                403   e-132
ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus] >gi|...   423   e-132
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   427   e-131
gb|AFM82591.1| polyprotein [Cacao swollen shoot CD virus]             397   e-131
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           404   e-131
gb|ATZ69477.1| ORF3 polyprotein [Cacao swollen shoot Ghana L virus]   394   e-131

>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  491 bits (1263), Expect = e-153
 Identities = 229/395 (57%), Positives = 299/395 (75%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +EYMENLLGEI+ LIW++W+M Y+AEY++L+   +GR GTQN+LSQMRR+FS ED  QGS
Sbjct: 616  MEYMENLLGEIEKLIWIRWRMTYVAEYESLIAIGDGRDGTQNILSQMRRVFSLEDPAQGS 675

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE+LSC +VKYII ++N+Y++LA+K+ R+F G ELSEK+W+KMPGDLG +
Sbjct: 676  TVIQDEAYRELERLSCTDVKYIIPFLNEYLRLAAKSGRIFLGGELSEKIWMKMPGDLGRR 735

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE EC             FC+ IPIPGYYK+  K
Sbjct: 736  IKENFDRKYPGVISGVVPRVLFAYKFLENECKEAAFKRSLKNLSFCSSIPIPGYYKNTGK 795

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N+R++ KR+AM
Sbjct: 796  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDRKSTKRMAM 855

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L++ EDC+I+SVQEGEE SDAI+SI EGE+D+EEL +S+QT+      + +++G ++
Sbjct: 856  FENLELPEDCDIVSVQEGEELSDAIYSISEGEDDVEELQRSLQTL-----ELVLMLGEVD 910

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ +EQ+NC H+W  N E+L P+  +C  C R +LKRARIHCP C++TACNL 
Sbjct: 911  GGYRPQIKLPDEQFNCAHNWVHNGEILVPKAIKCSFCKRDSLKRARIHCPLCLLTACNLC 970

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 971  GPYYLKIEVPVDPAPSTPLNPRRIIQEQHNYIGWC 1005



 Score = 81.3 bits (199), Expect = 4e-12
 Identities = 64/188 (34%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
 Frame = +3

Query: 96  DQDAPIWDSYSEEED-----------FENPFSV-----------EDNGMQAQIIASFEME 209
           ++D  ++ SY+ + D           + NPFS             D   Q Q++A+ E E
Sbjct: 436 EEDNALYPSYTPDVDATFDYPLKRIHYINPFSEAGGEDERKKGERDEREQEQVLAAVEEE 495

Query: 210 --YPSLRRL*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPA--IADPGPSTRPIFESR 377
             YP   +  E              PY PP D AMG   YPPA  I++ G S+   + SR
Sbjct: 496 LAYPQRFKAIEKLLSTSEVTG----PYRPPDDAAMGRPSYPPARAISEEGMSSSN-YPSR 550

Query: 378 LPN--TRFKRDSMNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VT 548
                TRFK    +E W            FV+P+QLGLF+D FSRWE +T NHV +Q  T
Sbjct: 551 FDTARTRFKGGYNDEMWTLPSAQQKNGAMFVLPEQLGLFNDAFSRWESVTKNHVATQSFT 610

Query: 549 DPRDNRIY 572
           D RD   Y
Sbjct: 611 DVRDKMEY 618


>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  486 bits (1250), Expect(2) = e-153
 Identities = 232/394 (58%), Positives = 297/394 (75%), Gaps = 1/394 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +EYMENLLGE++ L+W+QW+M Y AEY+ L+ + EGR GTQN++SQMRR+FS ED  QGS
Sbjct: 583  LEYMENLLGEVEKLLWIQWRMQYNAEYEELVRTGEGREGTQNIISQMRRVFSLEDPAQGS 642

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQ+ AYRDLEKLSCDN+KYI+QY+N Y++LA+K+ R + G ELSEKLWLKMPGDLG +
Sbjct: 643  TVIQEEAYRDLEKLSCDNIKYIVQYLNQYLRLAAKSGRAYVGMELSEKLWLKMPGDLGNR 702

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            +K AF+E+Y GLT+ V PR+LFAYKFLE EC             FC  IPIPGYYKDQK+
Sbjct: 703  MKTAFEERYPGLTVGVAPRILFAYKFLEAECKEAAFKRSLKNLSFCKDIPIPGYYKDQKR 762

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
             GI KS+ YKGK HESHARIEKRKHLIRNK+CKCYL   EGHFAREC N+R++ KRVAMF
Sbjct: 763  LGIRKSQRYKGKPHESHARIEKRKHLIRNKRCKCYLCGEEGHFARECPNDRKSAKRVAMF 822

Query: 1282 EQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHING 1458
            EQL++ ED +I+SV EGE+ SDAI+S+ EGE+ +E+L +S++++ I+ E +FML G  +G
Sbjct: 823  EQLELPEDYDIVSVNEGEDNSDAIYSLSEGEDGMEDLGQSLKSLMIT-EKMFML-GEEDG 880

Query: 1459 GYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLYG 1638
            G+RP++K+S+EQ  C H W+ N E+      +C+ C   T+KRARIHCPKC  TACNL G
Sbjct: 881  GWRPKIKVSDEQLACQHKWEHNGEIQQFVYLKCLGCQCPTMKRARIHCPKCKATACNLCG 940

Query: 1639 PYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            PYYF +++              LI EQQ +I WC
Sbjct: 941  PYYFKKEVPVAPPPPTPMNPRKLIMEQQNHIQWC 974



 Score = 86.7 bits (213), Expect(2) = e-153
 Identities = 70/207 (33%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
 Frame = +3

Query: 12  LENPNDEDDFSSHIQDMANLCTPVVSEPDQDAPIWD-SYSEEEDFENPFSV----EDNGM 176
           +++  +EDD+    + MA L   +   P    PI+D S +E +DF NPF+      D G 
Sbjct: 389 MDDAVEEDDYDPDAR-MA-LLNLMGRAPVHQIPIYDESDAEMDDFINPFAEGGGERDTGS 446

Query: 177 Q--------AQIIASFEMEYPSLRRL*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPA 332
           +         + +A   ++YP +++L                 Y PP D  MGP  YPPA
Sbjct: 447 ENSEKLFVFQEEVAEPTLDYPVMKKL-----EKVYSTSEVTSRYTPPTDAVMGPPSYPPA 501

Query: 333 IADPGPSTR------PIFESRLPNTRFKRDSMNESWXXXXXXXXXXXXFVIPQQLGLFHD 494
               G  T       P F  R+    FK    +E W            FVIP+Q+G+FHD
Sbjct: 502 RNINGAGTSYAAASPPNFNRRV---NFKAGYNDELWSLPPAQQKGGAMFVIPEQIGMFHD 558

Query: 495 VFSRWEFITLNHVGSQ-VTDPRDNRIY 572
           VFSRWE IT NHV SQ  TD RD   Y
Sbjct: 559 VFSRWESITKNHVSSQGFTDVRDKLEY 585


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  483 bits (1242), Expect(2) = e-152
 Identities = 229/395 (57%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            IEYMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDLG +
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKR 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL +S+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 86.7 bits (213), Expect(2) = e-152
 Identities = 62/166 (37%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
 Frame = +3

Query: 93  PDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXXX 272
           PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E            
Sbjct: 447 PDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS-- 501

Query: 273 XXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXXX 437
             PY PP+D AMG   YPPA   PG         P F++    TRFK    +E W     
Sbjct: 502 --PYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPSA 557

Query: 438 XXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                  FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 558 QQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIEY 603


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  483 bits (1242), Expect(2) = e-152
 Identities = 229/395 (57%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            IEYMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDLG +
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKR 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL +S+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 86.7 bits (213), Expect(2) = e-152
 Identities = 62/166 (37%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
 Frame = +3

Query: 93  PDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXXX 272
           PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E            
Sbjct: 447 PDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS-- 501

Query: 273 XXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXXX 437
             PY PP+D AMG   YPPA   PG         P F++    TRFK    +E W     
Sbjct: 502 --PYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPSA 557

Query: 438 XXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                  FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 558 QQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIEY 603


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  481 bits (1238), Expect(2) = e-152
 Identities = 228/395 (57%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            IEYMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDLG +
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKR 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAR+C N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL +S+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 87.4 bits (215), Expect(2) = e-152
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
 Frame = +3

Query: 90  EPDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXX 269
           +PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E           
Sbjct: 446 QPDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS- 501

Query: 270 XXXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXX 434
              PY PP+D AMG   YPPA   PG         P F++    TRFK    +E W    
Sbjct: 502 ---PYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPS 556

Query: 435 XXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                   FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 557 AQQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIEY 603


>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  481 bits (1238), Expect(2) = e-151
 Identities = 228/395 (57%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            I+YMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDLG +
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKR 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL +S+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 86.7 bits (213), Expect(2) = e-151
 Identities = 62/166 (37%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
 Frame = +3

Query: 93  PDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXXX 272
           PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E            
Sbjct: 447 PDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS-- 501

Query: 273 XXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXXX 437
             PY PP+D AMG   YPPA   PG         P F++    TRFK    +E W     
Sbjct: 502 --PYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPSA 557

Query: 438 XXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                  FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 558 QQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIKY 603


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  483 bits (1242), Expect(2) = e-151
 Identities = 229/395 (57%), Positives = 293/395 (74%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            IEYMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDLG +
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKR 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL +S+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 83.6 bits (205), Expect(2) = e-151
 Identities = 61/166 (36%), Positives = 78/166 (46%), Gaps = 6/166 (3%)
 Frame = +3

Query: 93  PDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXXX 272
           PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E            
Sbjct: 447 PDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS-- 501

Query: 273 XXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXXX 437
             PY PP+D AM    YPPA   PG         P F++    TRFK    +E W     
Sbjct: 502 --PYRPPEDAAMRRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPSA 557

Query: 438 XXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                  FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 558 QQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIEY 603


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
 gb|AEF56561.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  477 bits (1227), Expect(2) = e-150
 Identities = 227/395 (57%), Positives = 291/395 (73%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            I+YMENLLGEI+ LIW+QW+M Y  EY+AL+   EGR GTQN+LSQMRR+FS ED  QGS
Sbjct: 601  IKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPAQGS 660

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE++SC +VKYII ++N+Y++LA+KT RLF G ELSEK+W+KMPGDL   
Sbjct: 661  TVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLRKT 720

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE+EC             FC+ IPIPGYYK+  K
Sbjct: 721  IKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGK 780

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAR+C N++R+ KR+AM
Sbjct: 781  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAM 840

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L+I EDC+I+SV+EGE+ SDAI+SI EGE+  +EL KS+QT+      I +++G I+
Sbjct: 841  FENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQKSLQTL-----EIVLMLGEID 895

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ EEQ NC+H+W  N ++   +   C  C R ++KRARIHCP C++TACNL 
Sbjct: 896  GGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLC 955

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 956  GPYYLKIEVPVEPAPSTPINPRRIIQEQHNYIGWC 990



 Score = 87.4 bits (215), Expect(2) = e-150
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
 Frame = +3

Query: 90  EPDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXX 269
           +PD +A  +D   +   + NPFS  + G +   + S EM+YP   +  E           
Sbjct: 446 QPDAEAE-FDYPLKRIHYLNPFS--EGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTS- 501

Query: 270 XXXPYNPPQDTAMGPLGYPPAIADPGPSTR-----PIFESRLPNTRFKRDSMNESWXXXX 434
              PY PP+D AMG   YPPA   PG         P F++    TRFK    +E W    
Sbjct: 502 ---PYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAA--RTRFKGGYNDEMWTLPS 556

Query: 435 XXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                   FVIP+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 557 AQQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKIKY 603


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  484 bits (1247), Expect = e-150
 Identities = 228/395 (57%), Positives = 297/395 (75%), Gaps = 2/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +EYMENLLGEI+ LIW+QW+M Y+AEY++L+   +GR GTQN+LSQMRR+FS ED  QGS
Sbjct: 580  MEYMENLLGEIEKLIWIQWRMTYVAEYESLIAIGDGRDGTQNILSQMRRVFSLEDPAQGS 639

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD AYR+LE+LSC +VKYII ++N+Y++LA+K+ R+F G ELSEK+W+KMPGDLG +
Sbjct: 640  TVIQDEAYRELERLSCTDVKYIIPFLNEYLRLAAKSGRIFLGGELSEKIWMKMPGDLGKR 699

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQ-K 1098
            IK  FD KY G+   V+PRVLFAYKFLE EC             FC+ IPIPGYYK+  K
Sbjct: 700  IKEEFDRKYPGVISGVVPRVLFAYKFLENECKEAAFKRSLKNLSFCSSIPIPGYYKNTGK 759

Query: 1099 KYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAM 1278
            KYG+ +S+TYKGK HESHARIEKRKHL+RNK+CKC+L   EGHFAREC N+R++ KR+AM
Sbjct: 760  KYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDRKSSKRMAM 819

Query: 1279 FEQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHIN 1455
            FE L++ +DC+I+SVQEGEE SDAI+SI EGE++ EEL +S+QT+      I +++G ++
Sbjct: 820  FENLELPDDCDIVSVQEGEELSDAIYSISEGEDNDEELQRSLQTM-----EIVLMLGEVD 874

Query: 1456 GGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLY 1635
            GGYRPQ+K+ +EQ+NC H+W  N E+L  +  +C  C R +LKRARIHCP C++TACNL 
Sbjct: 875  GGYRPQIKLPDEQFNCAHNWVHNGEILVQKAIKCSFCRRESLKRARIHCPLCLLTACNLC 934

Query: 1636 GPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            GPYY   ++              +I EQ  YI WC
Sbjct: 935  GPYYLKIEVPVDPAPSTPLNPRRIIQEQHNYIGWC 969



 Score = 77.0 bits (188), Expect = 8e-11
 Identities = 55/165 (33%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
 Frame = +3

Query: 90  EPDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASFEMEYPSLRRL*ENXXXXXXXXXX 269
           EP      ++ +S E + E  +  E      +  A  E+ YP   +  E           
Sbjct: 423 EPQATTIRFEEFSSEAELELAYQQEVFAAVEEE-AELELAYPQRFKAIEKLLSTSEVTG- 480

Query: 270 XXXPYNPPQDTAMGPLGYPPA--IADPGPSTRPI-FESRLPNTRFKRDSMNESWXXXXXX 440
              PY PP D AMG   YPPA  I++ G S+     +     TRF+    +E W      
Sbjct: 481 ---PYRPPDDAAMGRPSYPPARSISEEGVSSSNYPSKFNAARTRFRGGYNDEMWTLPSAQ 537

Query: 441 XXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRDNRIY 572
                 FV+P+QLGLF+D FSRWE +T NHV +Q  TD RD   Y
Sbjct: 538 QKNGAMFVLPEQLGLFNDAFSRWESVTKNHVATQSFTDVRDKMEY 582


>ref|XP_020676930.1| uncharacterized protein LOC110095647 [Dendrobium catenatum]
          Length = 517

 Score =  432 bits (1110), Expect = e-142
 Identities = 208/394 (52%), Positives = 278/394 (70%), Gaps = 2/394 (0%)
 Frame = +1

Query: 565  EYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGST 744
            E++ENLLGE +NL W+QW+MA+  EY+  +N+A+GR GTQN++SQ+RRIF  ED  QGST
Sbjct: 114  EFIENLLGEAENLTWMQWRMAFPNEYQTTINTADGREGTQNIISQIRRIFMLEDPYQGST 173

Query: 745  SIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQI 924
             IQD AYRD+E+LSC+N+K ++Q+MN+Y+++A+KT R+FT PE SEK W K+PGDLG +I
Sbjct: 174  LIQDEAYRDIERLSCNNLKDVLQFMNEYMRIAAKTGRMFTSPERSEKFWSKLPGDLGSRI 233

Query: 925  KAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYY-KDQKK 1101
            K AFD +Y+G  + VIPR+LF Y++LE EC             FCNQIPIPGYY K +KK
Sbjct: 234  KMAFDTRYSGNQVGVIPRILFTYRYLENECKEATFHRALKGLQFCNQIPIPGYYKKPEKK 293

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YGI +S TYKGK H SHARIEK+KHLIRNK CKC+L   EGHFAREC N++++IKRVA+F
Sbjct: 294  YGIRRSTTYKGKPHNSHARIEKKKHLIRNKNCKCFLCGEEGHFARECPNDKKSIKRVAIF 353

Query: 1282 EQLDISEDCNILSVQEGE-ESDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHING 1458
            E +DIS DC I+SV EGE ESDAI+SI EG ED  E +   +TI   +E+          
Sbjct: 354  EGIDISADCEIVSVDEGEAESDAIYSISEG-EDANEAYTIQETICYFRETDRTYWVGKAE 412

Query: 1459 GYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNLYG 1638
             ++P+V++++ QY C H+W+  E++  PQ  RC CC R T K+ R+HCPKC +T+C +  
Sbjct: 413  SWQPRVQVTQRQYECQHEWQKYEDITDPQYLRCHCCKRETNKKFRMHCPKCNLTSCGMCS 472

Query: 1639 PYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            P YF+  +             +L+ EQ  YI WC
Sbjct: 473  PNYFDTVLTLQRDTPVQYNPRNLVLEQTKYIKWC 506


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
 gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
          Length = 1892

 Score =  409 bits (1051), Expect(2) = e-136
 Identities = 199/400 (49%), Positives = 274/400 (68%), Gaps = 9/400 (2%)
 Frame = +1

Query: 565  EYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGST 744
            E+MENLLGE + L WVQW+M +  EY+ ++N+A+GR GTQN+LSQMRR+F+ ED T GST
Sbjct: 626  EFMENLLGETEKLTWVQWRMNFPTEYQEMVNAADGREGTQNILSQMRRVFTLEDPTTGST 685

Query: 745  SIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQI 924
            ++QD AYRDLE+LSC N+K I+ ++NDY +LA+K+ R+F  PELSEKLWLKMP DLG +I
Sbjct: 686  AVQDEAYRDLERLSCTNIKDIVSFLNDYARLAAKSGRMFISPELSEKLWLKMPYDLGNKI 745

Query: 925  KAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKKY 1104
            + A++ K+ G TI V PR+LF YK+LEQEC             FC+++P+PGYY ++K+Y
Sbjct: 746  RTAYEAKHEGNTIGVFPRILFTYKYLEQECKEAAFRRSLKNLSFCSEMPLPGYYGEKKRY 805

Query: 1105 GI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMFE 1284
            G+ +S TYKGK H +HARIEK+KHL+RNK+CKCYL    GHFAREC N+++N +RVAM+E
Sbjct: 806  GVRRSTTYKGKPHPTHARIEKQKHLVRNKRCKCYLCGEMGHFARECPNDKKNTRRVAMYE 865

Query: 1285 QLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEELHKSIQTINISQESIFMLIGHING- 1458
            QL+I E   ++SV+EGEE SDAIFSI E E++      ++ T     E+IFM     +  
Sbjct: 866  QLNIPEGFEVVSVEEGEEVSDAIFSISENEDE-----DALHTGGAFAETIFMFHEGTDNV 920

Query: 1459 -------GYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCII 1617
                   GY P  +I+ EQ+ C H+W++N+EV   + E+C  C + T +R R+HCPKC I
Sbjct: 921  YWAGKKDGYLPYKRITREQFQCEHEWQMNQEVATVELEKCSFCKQETRRRMRLHCPKCRI 980

Query: 1618 TACNLYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
            T+C L    Y    I             SL+ +QQ YI++
Sbjct: 981  TSCVLCSSNYCGIAIKPEPVQTSFFNEKSLLTQQQEYIAY 1020



 Score =  106 bits (265), Expect(2) = e-136
 Identities = 73/210 (34%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
 Frame = +3

Query: 9    SLENPNDEDDFSSHIQDMANLCTPVVSEPDQ-DAPIW-----DSYSEEEDFENPFSVEDN 170
            S E  +DEDD+ S  Q +A       ++P    +P W     +    +E+ ENP   E  
Sbjct: 414  SQEESDDEDDWVSRFQFLAQFDEEPATQPQSPQSPTWYNPFAEGGGSDENDENPDPEESE 473

Query: 171  GMQAQIIASFEME-----------------YPSLRRL*ENXXXXXXXXXXXXXPYNPPQD 299
             M  ++    E+E                 YP LR L +N              Y PPQD
Sbjct: 474  EMGNEMGYETEVEEQEEKVAMIQEDPDLLPYPHLRELLKNEEKVFSTQQSEVSSYRPPQD 533

Query: 300  TAMGPLGYPPAIADPGPST-RPIFESRLPNT-RFKRDSMNESWXXXXXXXXXXXXFVIPQ 473
            TAM P GY PA  +   ST +P+FE  +P   +FK+D   E W            FVIP+
Sbjct: 534  TAMTPAGYAPARGEASSSTHQPMFEGYMPRRPQFKQDRSTEYWQFPTAQGQTGAMFVIPR 593

Query: 474  QLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
            Q+GLFHD F+RWE IT N+V SQ  TD +D
Sbjct: 594  QIGLFHDAFNRWESITKNYVASQGFTDSKD 623


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  409 bits (1052), Expect(2) = e-133
 Identities = 199/395 (50%), Positives = 271/395 (68%), Gaps = 3/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E+MENLLGE + L W+QW+M Y AEY+ L+  A+GR GTQN+LSQ++R+FS ED   GS
Sbjct: 561  VEFMENLLGETEKLTWIQWRMNYEAEYQQLITQADGRQGTQNILSQIKRVFSLEDPASGS 620

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T +QDAAYRDLE+L+C N+K I+Q++NDY +LA+K+ R+F G ELSEKLW+KMP +LG +
Sbjct: 621  TRVQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRMFLGTELSEKLWMKMPPELGHR 680

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            ++ AF ++Y+G  + V PR+LFAYK+LEQEC             FC  +PI GYY    K
Sbjct: 681  MREAFHKEYSGNEVGVFPRILFAYKYLEQECKDAAFKRSLKSLSFCKDMPITGYYDRGPK 740

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YGI +S+TY+GK HE+HAR+EKRKHLIRNKKCKCYL   EGHFAREC N +R++KRVA+F
Sbjct: 741  YGIRRSKTYRGKPHETHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNSKRDVKRVAIF 800

Query: 1282 EQLDISEDCNILSVQEGE-ESDAIFSIFEGEEDL--EELHKSIQTINISQESIFMLIGHI 1452
            E +D+ E  +I+SV+EGE ESDAI+SI E E+++  EE  K+ +     +E     +G  
Sbjct: 801  EGIDLPEGYDIISVEEGEAESDAIYSISENEDEVLPEEGVKTEKVFMFREEDQTYWLGRK 860

Query: 1453 NGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNL 1632
            N  +   VK+S +QYNCLH W+ N+E+      +C  C + T  R+RIHC  C +TAC +
Sbjct: 861  N-HWTAMVKVSSQQYNCLHQWEHNQEITQVAYLKCYFCKQQTHIRSRIHCSTCTLTACFM 919

Query: 1633 YGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
              P Y N  +            N+L+ +QQ YI W
Sbjct: 920  CAPVYCNTTVQQAPKQAIPYNPNTLLQQQQGYIQW 954



 Score = 97.1 bits (240), Expect(2) = e-133
 Identities = 64/173 (36%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
 Frame = +3

Query: 96  DQDAPIWDSYSEEEDFENPFSVEDNGMQAQ--------------IIASFE--MEYPSLRR 227
           D + PIWD  SE+ED  N    + N    Q              I A ++  +EYP  + 
Sbjct: 392 DDEPPIWDKSSEDEDEGNEDDDDPNTYMLQLQKEEDEWQEIKEEIAAGWQENLEYPVKKP 451

Query: 228 L*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPAIADPG--PSTRPIFESRLPNT-RFK 398
           L E               YNPP DT M P+GYPPA       P   P+FE +  +  RFK
Sbjct: 452 LTETVLSEVVD-------YNPPGDTLMTPVGYPPASTTRSQVPDKPPLFEGQSSHVPRFK 504

Query: 399 RDSMNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDP 554
           +D+ +E W            FV+P+Q+GLFHDVFSRWE +T N+V +Q  TDP
Sbjct: 505 KDNYSEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESVTKNYVAAQGFTDP 557


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  410 bits (1053), Expect(2) = e-132
 Identities = 201/396 (50%), Positives = 272/396 (68%), Gaps = 4/396 (1%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E+MENLLGE + L W+QW+M Y AEY+ LL  A+GR GTQN+LSQ++R+FS ED   GS
Sbjct: 575  MEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPASGS 634

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQDAAYRDLE+L+C N+K I+Q++NDY +LA+K+ RLF G ELSEKLW+KMP +LG +
Sbjct: 635  TRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR 694

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            +K AF ++Y+G  + V PR+LFAY++LEQEC             FC  +P+ GYY    K
Sbjct: 695  MKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTSK 754

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ KSRTYKGK H SHAR+EKRKHLIRNKKCKCYL   EGHFAREC N+RR++KRVA+F
Sbjct: 755  YGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVAIF 814

Query: 1282 EQLDISEDCNILSVQEG-EESDAIFSIFE---GEEDLEELHKSIQTINISQESIFMLIGH 1449
            E +D+ E  +I+SV+EG EESDAI+SI E   GE D E +H+ +  +    +S +  +G 
Sbjct: 815  EGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEAVHEKVFVMREEDQSYW--LGK 872

Query: 1450 INGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACN 1629
             N  +   V++S +QY+C+H W+ N+E+L      C  C + T  R+RIHCP C +T+C 
Sbjct: 873  TN-HWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSCF 931

Query: 1630 LYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
            +  P Y N  +            ++L+ +Q  YI W
Sbjct: 932  MCAPIYCNIMVQQQPKPPVPFNSHTLLQQQAAYIQW 967



 Score = 94.4 bits (233), Expect(2) = e-132
 Identities = 63/164 (38%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
 Frame = +3

Query: 108 PIWDSYSEEEDFE----NPFSVEDNGMQAQIIASF--EMEYPSLRRL*ENXXXXXXXXXX 269
           PIWD   EE++++      +  ++     +I AS   EMEYP  R   E           
Sbjct: 417 PIWDQEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYPKRRPQTETAFSETVD--- 473

Query: 270 XXXPYNPPQDTAMGPLGYPPAIADPG----PSTRPIFESRLPNT-RF-KRDSMNESWXXX 431
               Y PP DT M P+GYPPA +       PS  P+FE R  +  RF KRD   E W   
Sbjct: 474 ----YTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFLKRDEYTEWWQLP 529

Query: 432 XXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
                    FV+P+Q+GLFH+VFSRWE IT N+V +Q  TDP +
Sbjct: 530 SSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTE 573


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
 gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  409 bits (1051), Expect(2) = e-132
 Identities = 202/396 (51%), Positives = 272/396 (68%), Gaps = 4/396 (1%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E+MENLLGE + L W+QW+M Y AEY+ LL  A+GR GTQN+LSQ++RIFS ED   GS
Sbjct: 575  MEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRIFSLEDPASGS 634

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQDAAYRDLE+L+C N+K I+Q++NDY +LA+K+ RLF G ELSEKLW+KMP +LG +
Sbjct: 635  TRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR 694

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            +K AF ++Y+G  + V PR+LFAY++LEQEC             FC  +P+ GYY    K
Sbjct: 695  MKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTSK 754

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ KSRTYKGK H SHAR+EKRKHLIRNKKCKCYL   EGHFAREC N+RR++KRVA+F
Sbjct: 755  YGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVAIF 814

Query: 1282 EQLDISEDCNILSVQEG-EESDAIFSIFE---GEEDLEELHKSIQTINISQESIFMLIGH 1449
            E +D+ E  +I+SV+EG EESDAI+SI E   GE D E +H+ +  +    +S +  +G 
Sbjct: 815  EGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEVVHEKVFMMREEDQSYW--LGK 872

Query: 1450 INGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACN 1629
             N  +   V++S +QY+C+H W+ N+E+L      C  C + T  R+RIHCP C +T+C 
Sbjct: 873  TN-HWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSCF 931

Query: 1630 LYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
            +  P Y N  +            ++L+ +Q  YI W
Sbjct: 932  MCAPIYCNMIVQQQPKPPVPFNTHTLLQQQAAYIQW 967



 Score = 95.1 bits (235), Expect(2) = e-132
 Identities = 65/172 (37%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
 Frame = +3

Query: 93  PDQDAP---IWDSYSEEEDFE----NPFSVEDNGMQAQIIASF--EMEYPSLRRL*ENXX 245
           PD++ P   IWD   EE++++      +  ++     +I AS   EMEYP  R   E   
Sbjct: 409 PDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEEDEWQEITASLREEMEYPKRRPQTE--- 465

Query: 246 XXXXXXXXXXXPYNPPQDTAMGPLGYPPAIADPG----PSTRPIFESRLPNT-RF-KRDS 407
                       Y PP DT M P+GYPPA +       PS  P+FE R  +  RF KRD 
Sbjct: 466 ----MAFSETVDYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFLKRDE 521

Query: 408 MNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
             E W            FV+P+Q+GLFH+VFSRWE IT N+V +Q  TDP +
Sbjct: 522 YTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTE 573


>gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]
          Length = 1837

 Score =  403 bits (1035), Expect(2) = e-132
 Identities = 200/403 (49%), Positives = 272/403 (67%), Gaps = 11/403 (2%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E+MENLLGE + L W+QW+M+Y AEY+ LL  A+GR GTQN+LSQ++R+FS ED   GS
Sbjct: 576  MEFMENLLGETEKLTWIQWRMSYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPASGS 635

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQDAAYRDLE+L+C N+K I+Q++NDY +LA+K+ RLF G ELSEKLW+KMP +LG +
Sbjct: 636  TKIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR 695

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            ++ AF ++Y+G  + V PR+LFAYK+LEQEC             FC  +P+ GYY    K
Sbjct: 696  MREAFQKEYSGNEVGVFPRILFAYKYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKAPK 755

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ KS+TYKGK H SHARIEKRKHLIRNKKCKCYL   EGHFAREC N +R++KRVA+F
Sbjct: 756  YGMRKSKTYKGKPHTSHARIEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIF 815

Query: 1282 EQLDISEDCNILSVQEGE-ESDAIFSIFEGE--EDLEELHKSIQTINISQESIFML---- 1440
            E +++ E  +I+SV+EGE +SDAI+SI E E  E+L+E         + QE +FM+    
Sbjct: 816  EGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDE--------EVVQEKVFMMKEED 867

Query: 1441 ----IGHINGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPK 1608
                +G  N  +   V++S +QY+CLH W+ N+E+       C  C + T  R+RIHCP 
Sbjct: 868  QSYWLGKTN-HWTAMVRVSSQQYHCLHQWEHNKEITTVAHINCHFCKQPTQLRSRIHCPT 926

Query: 1609 CIITACNLYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
            C +T+C +  P Y N  +            ++L+ +Q  YI W
Sbjct: 927  CKLTSCFMCAPIYCNTTVQQQPKPPTPFNTHTLLQQQAAYIQW 969



 Score =  100 bits (249), Expect(2) = e-132
 Identities = 70/193 (36%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
 Frame = +3

Query: 24  NDEDDFSSHIQDMANLCTPVVSEPDQDAPIWDSYSEEEDFE-NPFSV-----EDNGMQ-- 179
           +DEDD     +D+       + E   + PIWD   EE++++ N +       ED   +  
Sbjct: 394 SDEDD-----EDIPPKWDESLDEEGLNEPIWDQEEEEDEYDPNVYMAYLQKEEDKWQEIA 448

Query: 180 AQIIASFEMEYPSLRRL*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPAIADPG---- 347
           A I    E+EYP  R   E               Y PP DT M P+GYPPA +       
Sbjct: 449 ATIQEERELEYPRRRPQTETAFSETVD-------YTPPVDTMMTPVGYPPASSSRSTVTT 501

Query: 348 PSTRPIFESRLPNT-RFKRDSMNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITL 524
           PS  P+FE R+ +  +FKRD   E W            FV+P+Q+GLFHDVFSRWE IT 
Sbjct: 502 PSRPPLFEGRISHVPKFKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHDVFSRWESITK 561

Query: 525 NHVGSQ-VTDPRD 560
           N+V +Q  TDP +
Sbjct: 562 NYVAAQGFTDPTE 574


>ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus]
 gb|AKA45804.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  423 bits (1088), Expect(2) = e-132
 Identities = 209/401 (52%), Positives = 277/401 (69%), Gaps = 8/401 (1%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E++ENLLGE + + W+QW+M Y   ++ +L SA+GR GTQN+LSQ+ R+F+ ED  QGS
Sbjct: 613  VEFIENLLGEAEKIAWIQWRMTYPEAFQQMLESADGRQGTQNILSQIYRVFTLEDPYQGS 672

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T++Q+ A RDLEKLSC N+K I+ YMN+Y++LA K+ RLF   +LSEK W KMPG+LG +
Sbjct: 673  TTMQEEALRDLEKLSCHNLKDIVAYMNEYMRLACKSRRLFINADLSEKFWFKMPGELGPR 732

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            IK A++ +Y G TI V PRVLFAYKFLE EC             FC+ IPIPGYYK +KK
Sbjct: 733  IKEAYEARYPGNTIGVFPRVLFAYKFLENECRDAAYKRSLKNLSFCSSIPIPGYYKIEKK 792

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ +SRTYKGK H SHARIE+RKHL RNK+CKCYL   EGHFAREC N+RR+IKRVA+F
Sbjct: 793  YGVRRSRTYKGKPHASHARIERRKHLQRNKRCKCYLCGQEGHFARECPNDRRSIKRVAIF 852

Query: 1282 EQLDISEDCNILSVQEGE-ESDAIFSIFEGEEDLEELHKSIQTINISQESIFM------- 1437
            E LD+ EDC+I+SVQEG+ ESDAI++I EGEE +E+L KS+  +++S+   +        
Sbjct: 853  ENLDLPEDCDIVSVQEGDNESDAIYNISEGEE-MEDLTKSLNVMSVSEHLYYFREEDQTY 911

Query: 1438 LIGHINGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCII 1617
             IG    GYR  +K ++ Q++C H W+ N         +C CC   T    R+HCP+C+I
Sbjct: 912  WIG--GEGYRSMIKATKTQHDCNHVWEYN----GAGSFKCFCCKEETSVNYRMHCPQCLI 965

Query: 1618 TACNLYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
            T CNL   YYF +++             SL+HEQQ YI+WC
Sbjct: 966  TTCNLCALYYFGQKVPASRPNPIQYNPLSLMHEQQGYITWC 1006



 Score = 79.0 bits (193), Expect(2) = e-132
 Identities = 57/169 (33%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
 Frame = +3

Query: 93  PDQDAPIWDSYSEEEDFENPFSVEDNGMQAQIIASF-------EMEYPSLRRL*ENXXXX 251
           P  + PI+D   EEE+           + + I A+F       E++YP L+ L ++    
Sbjct: 447 PINNFPIFDKSDEEEEILPSSDSCRKEIASYIAAAFPENNADDEIDYPQLKNLQQHLYAS 506

Query: 252 XXXXXXXXXPYNPPQDTAMGPLGYPPA----IADPGPSTRPIFESRLPN-TRFKRDSMNE 416
                     Y PPQD AMGP  Y P     I       RP FE   P   R+K    +E
Sbjct: 507 PSAITG----YKPPQDVAMGPPNYGPTPLRVIRPEAGPLRPAFEGYKPGEVRYKAKDYSE 562

Query: 417 SWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
            W            F+IP QLG+F+D F RWE IT N V  Q  TDP D
Sbjct: 563 WWNLPSAQHGTGAIFIIPTQLGMFNDTFMRWESITKNLVSQQGFTDPND 611


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  427 bits (1098), Expect(2) = e-131
 Identities = 211/398 (53%), Positives = 277/398 (69%), Gaps = 6/398 (1%)
 Frame = +1

Query: 565  EYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGST 744
            E++EN+LG  + +IW QW+M Y  EY+ L+ +A+GR GTQN+LSQMRR+FS ED T GST
Sbjct: 715  EFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDPTTGST 774

Query: 745  SIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQI 924
            ++QD AYRDLE+L+CD+VK+I+QY+ND++++A+KT R+F GPELSEKLWLKMPGDLG ++
Sbjct: 775  AVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLGQRM 834

Query: 925  KAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYY---KDQ 1095
            K A++EK+ G  + V PR+LFAYK+LE EC             FC+ IPIPGYY     +
Sbjct: 835  KKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGKSGE 894

Query: 1096 KKYGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVA 1275
            K+YG+ ++ TYKGK H +HARIEK KHL RNKKCKCYL   EGHFAREC N+RRN+KRVA
Sbjct: 895  KRYGVRRTTTYKGKPHSTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVA 953

Query: 1276 MFEQLDISEDCNILSVQEGE-ESDAIFSIFEGEE--DLEELHKSIQTINISQESIFMLIG 1446
            MFE LD+ +DC I+S+ EG+ +SDAIFSI EGEE   LEE     Q     +E       
Sbjct: 954  MFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEEAGTLEE-----QCFVFQEECNGTYWL 1008

Query: 1447 HINGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITAC 1626
               GGY+  V+IS+E Y C H+W+ N+ +  P   RC  C R T +RAR+HC  C IT+C
Sbjct: 1009 GKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSC 1068

Query: 1627 NLYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISWC 1740
             + GP YFN++I              L+ +QQ YI+WC
Sbjct: 1069 LMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQEYIAWC 1106



 Score = 73.2 bits (178), Expect(2) = e-131
 Identities = 46/100 (46%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
 Frame = +3

Query: 282 YNPPQDTAMGPLGYPPA--IADPG--PSTR-PIFESRLPNT-RFKRDSMNESWXXXXXXX 443
           Y PP DTAM P+ YPPA  IA P   PS + P+FE   P    FKRD+ +          
Sbjct: 614 YTPPTDTAMTPVAYPPAQNIASPSYNPSPQMPMFEGYYPKRPNFKRDN-HAFISLPSAQQ 672

Query: 444 XXXXXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
                F++PQQ+GLFH+VF+ WE IT  +V  Q +TDPRD
Sbjct: 673 NTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDPRD 712


>gb|AFM82591.1| polyprotein [Cacao swollen shoot CD virus]
          Length = 1872

 Score =  397 bits (1021), Expect(2) = e-131
 Identities = 193/395 (48%), Positives = 270/395 (68%), Gaps = 3/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E++ENLLGE + L W+QW+M Y AEY+ LL  AEGR GTQN+LSQ++R+FS ED   GS
Sbjct: 608  MEFIENLLGETEKLTWIQWRMRYEAEYQQLLTLAEGRQGTQNILSQIKRVFSLEDPASGS 667

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQD+AYRDLE+L+C N+K I+Q++NDY +LA+K+ RLF G ELSEKLW+KMP +LG +
Sbjct: 668  TRIQDSAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFIGTELSEKLWMKMPPELGHR 727

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            ++ AF ++Y G  + V PR+LFAY++LEQEC             FC  +P+ GYY    +
Sbjct: 728  MREAFQKEYEGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKSSR 787

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ +S+TYKGK H SHARIEKRKHL+RNK+CKCYL   EGHFAREC N +R++KRVA+F
Sbjct: 788  YGMRRSKTYKGKPHASHARIEKRKHLVRNKRCKCYLRGDEGHFARECPNNKRDVKRVAIF 847

Query: 1282 EQLDISEDCNILSVQEGEE-SDAIFSIFEGEEDLEE--LHKSIQTINISQESIFMLIGHI 1452
            E +++ +D  I+SV+EGEE SDAI+S+ E EE+L++  LH+ +  I    +S +M  G  
Sbjct: 848  EGINLPDDYEIVSVEEGEEDSDAIYSLSENEEELQDEVLHEKVFMIREGDQSYWM--GKA 905

Query: 1453 NGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNL 1632
            N  +   V++S +QY+C H W+ N+E+       C  C + T  R R+HCP C +T+C +
Sbjct: 906  N-HWTAMVRVSYQQYHCPHQWEHNKEIPIMALINCHFCKQPTNLRGRVHCPTCQLTSCYM 964

Query: 1633 YGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
              P Y + Q+            N+L+ +Q  YI W
Sbjct: 965  CAPIYCDVQVQQQPKTPIPFSPNALLQQQAAYIRW 999



 Score =  101 bits (252), Expect(2) = e-131
 Identities = 74/217 (34%), Positives = 97/217 (44%), Gaps = 31/217 (14%)
 Frame = +3

Query: 3    DTSLENPNDEDDFSSHIQDMANLCTPVVSEPD-----QDAPIWDSYSEEEDFENPFSVED 167
            DT+LE+  +E D             P+ SE D     QD P+W    EEE+ E     E+
Sbjct: 408  DTNLESEGEEPD------------EPLRSEEDEEEEVQDEPVWHQEEEEEEEEEEEEEEE 455

Query: 168  NGMQ-----------------AQIIASF--EMEYPSLRRL*ENXXXXXXXXXXXXXPYNP 290
               +                  +IIAS   EMEYP  R                   Y P
Sbjct: 456  EEDEYDPNTYMAYLQKEEDDWTEIIASLNPEMEYPQRRT------EVAETVFSEIVDYTP 509

Query: 291  PQDTAMGPLGYPPAIADPG----PSTRPIFESRLPNTR--FKRDSMNESWXXXXXXXXXX 452
            P DT M P+GYPPA +       PS  P++E R+P+     +RD   E W          
Sbjct: 510  PGDTLMTPVGYPPASSSRSTVTTPSRPPLYEGRIPSASRVLRRDDYTEWWQLPSSQGTTG 569

Query: 453  XXFVIPQQLGLFHDVFSRWEFITLNHVGSQ-VTDPRD 560
              FV+P+Q+GLFHDVFSRWE IT N+V +Q +TDP +
Sbjct: 570  ALFVMPKQIGLFHDVFSRWESITKNYVSAQGITDPTE 606


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  404 bits (1037), Expect(2) = e-131
 Identities = 200/401 (49%), Positives = 271/401 (67%), Gaps = 9/401 (2%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E+MENLLGE + L W+QW+M+Y AEY+ LL  A+GR GTQN+LSQ++R+FS ED   GS
Sbjct: 577  MEFMENLLGETEKLTWIQWRMSYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPASGS 636

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T IQDAAYRDLE+L+C N+K I+Q++NDY +LA+K+ RLF G ELSEKLW+KMP +LG +
Sbjct: 637  TRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHR 696

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            +K AF ++Y+G  + V PR+LFAYK+LEQEC             FC  +P+ GYY    K
Sbjct: 697  MKEAFQKEYSGNEVGVFPRILFAYKYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDQPPK 756

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ KS+TYKGK H SHAR+EKRKHLIRNKKCKCYL   EGHFA+EC N +R++KRVA+F
Sbjct: 757  YGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFAKECPNNKRDVKRVAIF 816

Query: 1282 EQLDISEDCNILSVQEGE-ESDAIFSIFEGEEDLEELHKSIQTINISQESIFML------ 1440
            E +++ E  +I+SV+EGE +SDAI+SI E E   EEL        + QE IFM+      
Sbjct: 817  EGINLPEGFDIVSVEEGEDDSDAIYSISENENG-EEL-----DAEVVQEKIFMMKEEDQS 870

Query: 1441 --IGHINGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCI 1614
              +G  N  +   V++S +QY+C+H W+ N+E++      C  C + T  R+RIHCP C 
Sbjct: 871  YWLGKTN-HWTAMVRVSSQQYHCMHQWEHNKEIMVVAHINCHFCKQPTQLRSRIHCPTCK 929

Query: 1615 ITACNLYGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
            +T+C +  P Y N  +            N+L+ +Q  YI W
Sbjct: 930  LTSCFMCAPIYCNTTVQQQPKPPAPFNTNTLLQQQAAYIQW 970



 Score = 95.5 bits (236), Expect(2) = e-131
 Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
 Frame = +3

Query: 39  FSSHIQDMANLCTPVVSEPDQDAP---IWDSYSEEEDFENPFSV------EDNGMQ--AQ 185
           + S I+D   L       PD++ P   IWD   EE++++    +      ED  ++  A 
Sbjct: 392 WGSDIEDDDELPPEWDESPDEEGPSEPIWDQEEEEDEYDPNIYMAQLQKEEDEWLEIAAT 451

Query: 186 IIASFEMEYPSLRRL*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPAIADPGPSTR-- 359
           +    EMEYP  R   E               Y PP DT M P+GYPPA +     T   
Sbjct: 452 LQEEREMEYPRRRPQTETVFSETVD-------YTPPTDTMMTPVGYPPASSSRSTVTTSS 504

Query: 360 --PIFESRLPNT-RFKRDSMNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNH 530
             P+FE R  +   FKRD+  E W            FV+P+Q+GLFH+VFSRWE IT N+
Sbjct: 505 RPPLFEGRTTHVPSFKRDNYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNY 564

Query: 531 VGSQ-VTDPRD 560
           V +Q  TDP +
Sbjct: 565 VAAQGFTDPTE 575


>gb|ATZ69477.1| ORF3 polyprotein [Cacao swollen shoot Ghana L virus]
          Length = 1853

 Score =  394 bits (1012), Expect(2) = e-131
 Identities = 194/395 (49%), Positives = 269/395 (68%), Gaps = 3/395 (0%)
 Frame = +1

Query: 562  IEYMENLLGEIKNLIWVQWKMAYLAEYKALLNSAEGRSGTQNVLSQMRRIFSSEDLTQGS 741
            +E++ENLLGE + L W+QW+M Y+ EY+ LL  A+GR GT N+LSQ++R+FS ED T GS
Sbjct: 603  VEFIENLLGETEKLTWIQWRMNYVTEYQQLLTQADGRQGTHNILSQVKRVFSLEDPTAGS 662

Query: 742  TSIQDAAYRDLEKLSCDNVKYIIQYMNDYIKLASKT*RLFTGPELSEKLWLKMPGDLGGQ 921
            T +QDAAYRDLE+L+C+N+K I+Q++NDY +LA+K+ RLF G ELS+KLWLKMP +LG +
Sbjct: 663  TRVQDAAYRDLERLTCNNIKDIVQFLNDYGRLAAKSGRLFLGEELSDKLWLKMPPELGTR 722

Query: 922  IKAAFDEKYTGLTICVIPRVLFAYKFLEQECXXXXXXXXXXXXXFCNQIPIPGYYKDQKK 1101
            +K  F ++Y G TI V PR+L+AYK+LEQEC             FC  +P+ GYY D+ K
Sbjct: 723  MKEGFQKEYPGNTIGVFPRILYAYKYLEQECKDAAFKRSLKSLSFCKDMPLTGYY-DKPK 781

Query: 1102 YGI*KSRTYKGKSHESHARIEKRKHLIRNKKCKCYLYS*EGHFARECLNERRNIKRVAMF 1281
            YG+ +S+TYKGK H +HARIEK+KHLIRNK+CKCYL   EGHFAREC N +R++KRVA+F
Sbjct: 782  YGVRRSQTYKGKPHATHARIEKKKHLIRNKRCKCYLCGDEGHFARECPNSKRDVKRVALF 841

Query: 1282 EQLDISEDCNILSVQEGEE-SDAIFSIF--EGEEDLEELHKSIQTINISQESIFMLIGHI 1452
            E +++ E+  I+SV+EGE  SDAI+SI   EGEE+L  L    +     +E     +G  
Sbjct: 842  EGINLPEEYEIVSVEEGEGISDAIYSISENEGEEEL-ALEVPEKVFMFKEEDHSYWLGKT 900

Query: 1453 NGGYRPQVKISEEQYNCLHDWKLNEEVLPPQPERCICCNRTTLKRARIHCPKCIITACNL 1632
            N  +    +++++QY C H W+ N E+   +   C+ CNR T   +RIHCP+C IT+C+L
Sbjct: 901  N-HWTAMKRVTQQQYQCQHQWEHNSEIAQKELLACLFCNRQTNLNSRIHCPQCQITSCSL 959

Query: 1633 YGPYYFNRQIXXXXXXXXXXXXNSLIHEQQYYISW 1737
              P Y +  +            N+LI +Q  YI W
Sbjct: 960  CSPIYCDTPVQQKPKVPAPYRSNTLIGQQAAYIVW 994



 Score =  104 bits (260), Expect(2) = e-131
 Identities = 64/188 (34%), Positives = 91/188 (48%), Gaps = 6/188 (3%)
 Frame = +3

Query: 15  ENPNDEDDFSSHIQDMANLCTPVVSEPDQD-APIWDSYSEEEDFENPFSVEDNGMQAQII 191
           E P  E+D S+   D      P++++  +D    W+ +   E+ E     ++     ++I
Sbjct: 414 EPPRKEEDPSNDDNDEGWEPLPIINDEHRDWENEWEQWEPSEERETEDEEDEFQRSIELI 473

Query: 192 ASFE--MEYPSLRRL*ENXXXXXXXXXXXXXPYNPPQDTAMGPLGYPPAIADPGPSTRP- 362
            + E  MEYP  +    N              Y PP DT M P+GYPPA     P  RP 
Sbjct: 474 GTLELEMEYPQRKESQSNQHQRKETILSEIVDYTPPADTLMTPVGYPPASTSRQPPARPP 533

Query: 363 IFESRLPNT-RFKRDSMNESWXXXXXXXXXXXXFVIPQQLGLFHDVFSRWEFITLNHVGS 539
           ++E R P T +F+RD   E W            FV+P+Q+GLFH+VFSRWE IT N+V +
Sbjct: 534 LYEGRFPQTPKFRRDDYTEWWQLPSSQATTGALFVMPKQIGLFHEVFSRWESITKNYVAA 593

Query: 540 Q-VTDPRD 560
           Q  TD  D
Sbjct: 594 QEFTDSSD 601