BLASTX nr result
ID: Cheilocostus21_contig00039803
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00039803
(626 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo... 128 1e-30
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo... 128 2e-30
gb|KYP59031.1| Retrovirus-related Pol polyprotein from transposo... 124 1e-29
gb|KNA13253.1| hypothetical protein SOVF_118610, partial [Spinac... 115 1e-28
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ... 122 1e-28
gb|EEC68906.1| hypothetical protein OsI_37574 [Oryza sativa Indi... 119 1e-28
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group] 122 2e-28
gb|EEC80481.1| hypothetical protein OsI_22711 [Oryza sativa Indi... 119 2e-28
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group] 122 2e-28
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group] 122 3e-28
gb|EEC79997.1| hypothetical protein OsI_21648 [Oryza sativa Indi... 119 3e-28
gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indi... 117 3e-28
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc... 121 4e-28
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc... 121 5e-28
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc... 121 5e-28
gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subc... 121 5e-28
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-... 121 5e-28
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group] 121 5e-28
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 121 5e-28
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 121 5e-28
>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 714
Score = 128 bits (321), Expect = 1e-30
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 172 PNNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTST 351
P +K FC+VCGR+NH A CF+R+ + ++ Q N++ + +
Sbjct: 138 PKSKIQGNESFCFVCGRNNHFAKDCFHRRRQPKDITSDPKSSSQPQANVITANASSDSPS 197
Query: 352 LRLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQ 531
R P +N I++ ++WW+DSGAN+HVC+++ FSSYQ+ +V+MGNGS A V G
Sbjct: 198 NRYHVTSPELNFIYNSNDWWIDSGANVHVCADKKLFSSYQECGTRTVSMGNGSLARVIGL 257
Query: 532 GQVILKFTSGKSLVLNNVLHVPEIRRNLVS 621
G+V L+ +SG LVL+ V HV EIR+NL+S
Sbjct: 258 GRVELELSSGNCLVLDEVFHVSEIRKNLIS 287
>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 880
Score = 128 bits (321), Expect = 2e-30
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 172 PNNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTST 351
P +K FC+VCGR+NH A CF+R+ + ++ Q N++ + +
Sbjct: 140 PKSKIQGNESFCFVCGRNNHFAKDCFHRRRQPKDITSDPKSSSQPQANVITANASSDSPS 199
Query: 352 LRLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQ 531
R P +N I++ ++WW+DSGAN+HVC+++ FSSYQ+ +V+MGNGS A V G
Sbjct: 200 NRYHVTSPELNFIYNSNDWWIDSGANVHVCADKKLFSSYQECGTRTVSMGNGSLARVIGL 259
Query: 532 GQVILKFTSGKSLVLNNVLHVPEIRRNLVS 621
G+V L+ +SG LVL+ V HV EIR+NL+S
Sbjct: 260 GRVELELSSGNCLVLDEVFHVSEIRKNLIS 289
>gb|KYP59031.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 489
Score = 124 bits (311), Expect = 1e-29
Identities = 60/150 (40%), Positives = 91/150 (60%)
Frame = +1
Query: 172 PNNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTST 351
P +K FC+VCGR+NH A CF+R+ + ++ Q N++ + +
Sbjct: 140 PKSKIQGNESFCFVCGRNNHFAKDCFHRRRQPKDITSDPKSSSQPQDNVITANASSDSPS 199
Query: 352 LRLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQ 531
R P +N I++ ++WW+DSGAN+HVC+++ FSSYQ+ +V+MGNGS A V G
Sbjct: 200 NRYHVTSPELNFIYNSNDWWIDSGANVHVCADKKLFSSYQECGTRTVSMGNGSLARVIGL 259
Query: 532 GQVILKFTSGKSLVLNNVLHVPEIRRNLVS 621
G+V L+ +S LVL+ V HV EIR+NL+S
Sbjct: 260 GRVELELSSRNCLVLDEVFHVSEIRKNLIS 289
>gb|KNA13253.1| hypothetical protein SOVF_118610, partial [Spinacia oleracea]
Length = 204
Score = 115 bits (289), Expect = 1e-28
Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN K T CYVCG+ H A QC+ R+ + +K QNK Q ++ E+ Q G
Sbjct: 23 NNGKGATGSGCYVCGKHGHKAYQCYNRQDAAKIGQK--QDQNKSQAHLTED-QNG----- 74
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGS-VTMGNGSSAAVHGQ 531
+++ + +NL+ + ++W +D+GA H C+N+ F ++++ + G V MGN SSA V G+
Sbjct: 75 -IIAAVAELNLVCNKADWIIDTGATKHFCANKELFENFEEAANGEQVFMGNSSSAEVIGK 133
Query: 532 GQVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
G++ LK SGK+L L+NVL+VP IRRNL+SG
Sbjct: 134 GKISLKLNSGKTLALHNVLYVPSIRRNLISG 164
>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 122 bits (307), Expect = 1e-28
Identities = 68/140 (48%), Positives = 83/140 (59%)
Frame = +1
Query: 205 CYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTLRLVSFIPSVN 384
C+VCG+ H A C RK +K NMV G TL F+P+V
Sbjct: 215 CFVCGKPGHWAKDCPERK-------------DKKSANMVISEDGG---TLGYGKFLPTVL 258
Query: 385 LIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQGQVILKFTSGK 564
+ H +WW+D+GANIHVC++ FSSYQ G S+ MGNGS AAVHG G V LKFTSGK
Sbjct: 259 SVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGK 318
Query: 565 SLVLNNVLHVPEIRRNLVSG 624
+ L NV HVP I++NLVSG
Sbjct: 319 IVQLKNVQHVPSIKKNLVSG 338
>gb|EEC68906.1| hypothetical protein OsI_37574 [Oryza sativa Indica Group]
Length = 342
Score = 119 bits (297), Expect = 1e-28
Identities = 64/140 (45%), Positives = 85/140 (60%)
Frame = +1
Query: 205 CYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTLRLVSFIPSVN 384
C+VCG+ H A C P K ++ NMV G++ ++ +P+V
Sbjct: 214 CFVCGKPGHWAKDC--------PEHK-----DRKSANMVISEGGGTSGYGKI---LPTVL 257
Query: 385 LIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQGQVILKFTSGK 564
+ H +WW+D+GANIHVC++ FSSYQ G S+ MGNGS AAVHG G V LKFTSGK
Sbjct: 258 SVFHSPDWWVDTGANIHVCADIFLFSSYQVGRGSSLLMGNGSLAAVHGVGMVDLKFTSGK 317
Query: 565 SLVLNNVLHVPEIRRNLVSG 624
++ L NV HVP I++NLVSG
Sbjct: 318 TVQLKNVQHVPSIKKNLVSG 337
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 122 bits (306), Expect = 2e-28
Identities = 67/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+PSV ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>gb|EEC80481.1| hypothetical protein OsI_22711 [Oryza sativa Indica Group]
Length = 360
Score = 119 bits (297), Expect = 2e-28
Identities = 65/150 (43%), Positives = 84/150 (56%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 102 NNNPNQDERTCFVCGQPGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 152
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P++ ++ + WW+D+GANIHVC++ FSSYQ G +V MGNGS VHG G
Sbjct: 153 SGYGNLPTIFSVNQSTNWWVDTGANIHVCADISLFSSYQVARGSTVLMGNGSHLYVHGVG 212
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 213 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 242
>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 122 bits (305), Expect = 2e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCSQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 122 bits (305), Expect = 3e-28
Identities = 67/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 646 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 696
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GANIHVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 697 SGYGNLPTVFSVNQSTNWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 756
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 757 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 786
>gb|EEC79997.1| hypothetical protein OsI_21648 [Oryza sativa Indica Group]
Length = 382
Score = 119 bits (297), Expect = 3e-28
Identities = 63/140 (45%), Positives = 85/140 (60%)
Frame = +1
Query: 205 CYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTLRLVSFIPSVN 384
C+VCG+ H A C RK ++ NMV G++ ++ +P+V
Sbjct: 167 CFVCGKSGHWAKDCPERK-------------DRKSANMVISEGGGTSGYGKI---LPTVL 210
Query: 385 LIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQGQVILKFTSGK 564
+ H +WW+D+GANIHVC++ FSSYQ G S+ MGNGS AAVHG G V LKFTSGK
Sbjct: 211 SVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGMVDLKFTSGK 270
Query: 565 SLVLNNVLHVPEIRRNLVSG 624
++ L N+ HVP I++NLVSG
Sbjct: 271 TVQLKNMQHVPSIKKNLVSG 290
>gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indica Group]
Length = 330
Score = 117 bits (294), Expect = 3e-28
Identities = 72/176 (40%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Frame = +1
Query: 106 HDTHNNTHCSLSPRLCSLRFSCPNNKKATTVKF---CYVCGRDNHLAPQCFYRKTESIPS 276
H +HNN + + N KK K C+VCG+ H A C RK
Sbjct: 107 HASHNNKKVKPDVKPDVKPNAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK------ 160
Query: 277 KKFKSPQNKHQINMVEEVQPGSTSTLRLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLW 456
++ NMV G++ +++ + SV H +WW+D+GANIHVC++
Sbjct: 161 -------DRKSANMVISEGGGTSGYGKILLTVLSV---FHSPDWWVDTGANIHVCADISL 210
Query: 457 FSSYQDTSGGSVTMGNGSSAAVHGQGQVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
FSSYQ G S+ MGNGS AAVHG G V LKFTSGK++ L NV HVP I++NLVSG
Sbjct: 211 FSSYQVRRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSG 266
>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 121 bits (303), Expect = 4e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 103 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 153
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 154 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 213
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 214 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 243
>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 121 bits (303), Expect = 5e-28
Identities = 73/178 (41%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Frame = +1
Query: 106 HDTHNNTHCS--LSPRLCSLRFSCPNNKKATTVKF---CYVCGRDNHLAPQCFYRKTESI 270
H +HNN + P+ + N KK + K C+VCG+ H A C RK
Sbjct: 327 HASHNNKKVKPDVKPKAAT------NFKKKSKGKAKGDCFVCGKSGHWAKDCPERK---- 376
Query: 271 PSKKFKSPQNKHQINMVEEVQPGSTSTLRLVSFIPSVNLIHHDSEWWLDSGANIHVCSNR 450
+K NM+ G++ ++ +P+V + H +WW+D+GANIHVC++
Sbjct: 377 ---------DKKSANMIISEGGGTSGYGKI---LPTVLSVFHSPDWWVDTGANIHVCADI 424
Query: 451 LWFSSYQDTSGGSVTMGNGSSAAVHGQGQVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
FSSYQ G S+ MGNGS AAVHG G V LKFTSGK++ L NV HVP I++NLVSG
Sbjct: 425 SLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSG 482
>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 193 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 243
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 244 SGYGNLPAVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 303
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 304 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 333
>gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 121 bits (303), Expect = 5e-28
Identities = 66/150 (44%), Positives = 86/150 (57%)
Frame = +1
Query: 175 NNKKATTVKFCYVCGRDNHLAPQCFYRKTESIPSKKFKSPQNKHQINMVEEVQPGSTSTL 354
NN + C+VCG+ HLA +C RK P+ + N V G+T
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSAN---------VTIGNTGDG 282
Query: 355 RLVSFIPSVNLIHHDSEWWLDSGANIHVCSNRLWFSSYQDTSGGSVTMGNGSSAAVHGQG 534
+P+V ++ + WW+D+GAN+HVC++ FSSYQ G +V MGNGS A+VHG G
Sbjct: 283 SGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVG 342
Query: 535 QVILKFTSGKSLVLNNVLHVPEIRRNLVSG 624
V LKFTSGK + L NV HVP I RNLVSG
Sbjct: 343 TVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 372