BLASTX nr result
ID: Cheilocostus21_contig00039579
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00039579
(1179 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ANK58539.1| polyprotein [Fig badnavirus 1] 231 1e-63
gb|ANK58536.1| polyprotein [Fig badnavirus 1] 231 1e-63
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1] 186 4e-48
gb|ANK58548.1| polyprotein [Fig badnavirus 1] 177 3e-45
gb|ANK58545.1| polyprotein [Fig badnavirus 1] 177 3e-45
gb|ANK58542.1| polyprotein [Fig badnavirus 1] 177 3e-45
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor... 176 1e-44
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration... 176 1e-44
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962... 172 2e-43
gb|ACH86210.1| unknown [Citrus yellow mosaic virus] 166 5e-43
gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 166 4e-41
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 166 4e-41
gb|AER00544.1| ORF III [Citrus yellow mosaic virus] 166 4e-41
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus] 166 4e-41
gb|ATZ69526.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 165 5e-41
gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 165 7e-41
gb|ATZ69510.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 165 7e-41
gb|AER00538.1| ORF III [Citrus yellow mosaic virus] 164 1e-40
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169... 164 1e-40
gb|ATZ69490.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus] 164 2e-40
>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 231 bits (589), Expect = 1e-63
Identities = 152/412 (36%), Positives = 200/412 (48%), Gaps = 30/412 (7%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEVHLVXXXXXXXXXXXXXXXXXXXX 522
V++RN++DGT+ F++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARFADYTQAPEPRQPHYNEQDEEV-ASDEEELAETQQHIVAMLRFPD 353
Query: 523 XXXLDDPQPIRRDSLDKIQFXXXXXXXXXXXXXXGY--EYVAHKPXXXXXXXXXXXXXTH 696
+ + +P ++ DK + Y Y A
Sbjct: 354 YVEIQEFKPKYKEQYDKYKREQGWDTLGEPSGKYDYYVRYTAPPATTPIEDIQPTGWEEE 413
Query: 697 NYAKDHNERKLTFSTKNSEVPRKEPQEEED------------------FINPFFH-XXXX 819
D + K + + E +E Q +E+ ++NPF
Sbjct: 414 PKCDDSPDEKSLATIRFEEYKEEESQSDEEHYHPDAEAEFDYPLKRIHYLNPFSEGGGKD 473
Query: 820 XXXXXXXXXHPSLQKLK*EMVHSGTITTATSPYRPPADAAMG---XXXXXXXXXXXXXXX 990
+P K +++ + +T SPYRPP DAAMG
Sbjct: 474 DHLNSEEMDYPQRMKKIEKLLSTSEVT---SPYRPPEDAAMGRPSYPPARTIPGGGASSS 530
Query: 991 XXXXXXXXXXXXFKSGMNNEMWNLPSAQQSSGAMFVIPEQLGLFDDAFSRWE 1146
FK G N+EMW LPSAQQ +GAMFVIPEQLGLF+DAFSRWE
Sbjct: 531 AEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWE 582
>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 231 bits (589), Expect = 1e-63
Identities = 152/412 (36%), Positives = 200/412 (48%), Gaps = 30/412 (7%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEVHLVXXXXXXXXXXXXXXXXXXXX 522
V++RN++DGT+ F++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARFADYTQAPEPRQPHYNEQDEEV-ASDEEELAETQQHIVAMLRFPD 353
Query: 523 XXXLDDPQPIRRDSLDKIQFXXXXXXXXXXXXXXGY--EYVAHKPXXXXXXXXXXXXXTH 696
+ + +P ++ DK + Y Y A
Sbjct: 354 YVEIQEFKPKYKEQYDKYKREQGWDTLGEPSGKYDYYVRYTAPPATTPIEDIQPTCWEEE 413
Query: 697 NYAKDHNERKLTFSTKNSEVPRKEPQEEED------------------FINPFFH-XXXX 819
D + K + + E +E Q +E+ ++NPF
Sbjct: 414 PKCDDSPDEKSLATIRFEEYKEEESQSDEEHYHPDAEAEFDYPLKRIHYLNPFSEGGGKD 473
Query: 820 XXXXXXXXXHPSLQKLK*EMVHSGTITTATSPYRPPADAAMG---XXXXXXXXXXXXXXX 990
+P K +++ + +T SPYRPP DAAMG
Sbjct: 474 DHLNSEEMDYPQRMKKIEKLLSTSEVT---SPYRPPEDAAMGRPSYPPARTIPGGGASSS 530
Query: 991 XXXXXXXXXXXXFKSGMNNEMWNLPSAQQSSGAMFVIPEQLGLFDDAFSRWE 1146
FK G N+EMW LPSAQQ +GAMFVIPEQLGLF+DAFSRWE
Sbjct: 531 AEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWE 582
>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
Length = 1846
Score = 186 bits (472), Expect = 4e-48
Identities = 95/158 (60%), Positives = 118/158 (74%), Gaps = 6/158 (3%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
Q+IFATMEIDLT L+YVIP+T+ T+RDFY+NIQISI T+GYENWR GEANLL+T G+
Sbjct: 173 QAIFATMEIDLTSGTQLVYVIPDTMMTLRDFYRNIQISILTRGYENWRNGEANLLVTRGV 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
M RLSNT N+GFAYQIQHVTD L SRGV AL GRRY+A ++ G+N IIRQ Q + P+
Sbjct: 233 MARLSNTPNVGFAYQIQHVTDHLESRGVRALPGRRYSAEQIQGQNWIIRQPQINIPMRPS 292
Query: 361 EVQSRNMMDGTVRISFSNYSIDQN------NADDEEVH 456
EV +RN+ DG+V I F +Y+ N DEE++
Sbjct: 293 EVDTRNLYDGSVSIRFRDYAPTDEQATPAYNKHDEEIN 330
Score = 73.2 bits (178), Expect = 4e-10
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +1
Query: 847 HPSLQKLK*EMVHSGTITTATSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1026
+P ++KL E V+S + TS Y PP DA MG
Sbjct: 466 YPVMKKL--EKVYS--TSEVTSRYTPPTDAVMGPPSYPPARNINGAGTSYAAASPPNFNR 521
Query: 1027 ---FKSGMNNEMWNLPSAQQSSGAMFVIPEQLGLFDDAFSRWE 1146
FK+G N+E+W+LP AQQ GAMFVIPEQ+G+F D FSRWE
Sbjct: 522 RVNFKAGYNDELWSLPPAQQKGGAMFVIPEQIGMFHDVFSRWE 564
>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 177 bits (450), Expect = 3e-45
Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 6/157 (3%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEV 453
V++RN++DGT+ F++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARFADYTQAPEPRQPHYNEQDEEV 331
Score = 84.3 bits (207), Expect = 1e-13
Identities = 45/83 (54%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX---FKSGMNNEMWNLPSAQQ 1077
TSPYRPP DAAMG FK G N+EMW LPSAQQ
Sbjct: 500 TSPYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQ 559
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFVIPEQLGLF+DAFSRWE
Sbjct: 560 KNGAMFVIPEQLGLFNDAFSRWE 582
>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 177 bits (450), Expect = 3e-45
Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 6/157 (3%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEV 453
V++RN++DGT+ F++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARFADYTQAPEPRQPHYNEQDEEV 331
Score = 82.0 bits (201), Expect = 6e-13
Identities = 44/83 (53%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAM---GXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSGMNNEMWNLPSAQQ 1077
TSPYRPP DAAM FK G N+EMW LPSAQQ
Sbjct: 500 TSPYRPPEDAAMRRPSYPPARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQ 559
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFVIPEQLGLF+DAFSRWE
Sbjct: 560 KNGAMFVIPEQLGLFNDAFSRWE 582
>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 177 bits (450), Expect = 3e-45
Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 6/157 (3%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEV 453
V++RN++DGT+ F++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARFADYTQAPEPRQPHYNEQDEEV 331
Score = 84.3 bits (207), Expect = 1e-13
Identities = 45/83 (54%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX---FKSGMNNEMWNLPSAQQ 1077
TSPYRPP DAAMG FK G N+EMW LPSAQQ
Sbjct: 500 TSPYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQ 559
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFVIPEQLGLF+DAFSRWE
Sbjct: 560 KNGAMFVIPEQLGLFNDAFSRWE 582
>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
Length = 1830
Score = 176 bits (446), Expect = 1e-44
Identities = 84/140 (60%), Positives = 110/140 (78%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYE+W+ GEANLLIT G+
Sbjct: 178 QSIFAIAEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTTGYESWQNGEANLLITRGM 237
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRYN+ + GRN IIRQ Q + +P
Sbjct: 238 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYNSDMLRGRNWIIRQPQLQVTMMPR 297
Query: 361 EVQSRNMMDGTVRISFSNYS 420
VQ+ N++DG++ F+NY+
Sbjct: 298 SVQTTNLLDGSISARFANYT 317
Score = 80.5 bits (197), Expect = 2e-12
Identities = 42/83 (50%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX---FKSGMNNEMWNLPSAQQ 1077
T PYRPP DAAMG F+ G N+EMW LPSAQQ
Sbjct: 479 TGPYRPPDDAAMGRPSYPPARSISEEGVSSSNYPSKFNAARTRFRGGYNDEMWTLPSAQQ 538
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFV+PEQLGLF+DAFSRWE
Sbjct: 539 KNGAMFVLPEQLGLFNDAFSRWE 561
>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
Length = 1789
Score = 176 bits (445), Expect = 1e-44
Identities = 84/140 (60%), Positives = 110/140 (78%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ T+ DFY+N+QISIQT GYE+W+ GEANLLIT G+
Sbjct: 176 QSIFAIAEVDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTTGYESWQNGEANLLITRGM 235
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRYN+ + GRN IIRQ Q + +P
Sbjct: 236 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYNSDILRGRNWIIRQPQLQVTMMPR 295
Query: 361 EVQSRNMMDGTVRISFSNYS 420
VQ+ N++DG++ F+NY+
Sbjct: 296 SVQTTNLLDGSISARFANYT 315
Score = 81.6 bits (200), Expect = 8e-13
Identities = 43/83 (51%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX---FKSGMNNEMWNLPSAQQ 1077
T PYRPP DAAMG FK G N+EMW LPSAQQ
Sbjct: 515 TGPYRPPDDAAMGRPSYPPARAISEEGMSSSNYPSRFDTARTRFKGGYNDEMWTLPSAQQ 574
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFV+PEQLGLF+DAFSRWE
Sbjct: 575 KNGAMFVLPEQLGLFNDAFSRWE 597
>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
gb|AEF56561.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 172 bits (436), Expect = 2e-43
Identities = 88/157 (56%), Positives = 113/157 (71%), Gaps = 6/157 (3%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFA E+DLT + ++YVIP+T+ + DFY+N+QISIQT GYENW+ GEANLLIT G+
Sbjct: 175 QSIFAISEVDLTRGSQIVYVIPDTMMIIGDFYRNVQISIQTSGYENWQNGEANLLITRGM 234
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATIPT 360
GRLSNT N+GFAY+I HVTD+LASRGV AL GRRY + + GRN IIRQ Q A +P
Sbjct: 235 TGRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPR 294
Query: 361 EVQSRNMMDGTVRISFSNYS------IDQNNADDEEV 453
V++RN++DGT+ ++Y+ N DEEV
Sbjct: 295 NVETRNLIDGTISARSADYTQAPEPRQPHYNEQDEEV 331
Score = 84.3 bits (207), Expect = 1e-13
Identities = 45/83 (54%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 907 TSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXX---FKSGMNNEMWNLPSAQQ 1077
TSPYRPP DAAMG FK G N+EMW LPSAQQ
Sbjct: 500 TSPYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQ 559
Query: 1078 SSGAMFVIPEQLGLFDDAFSRWE 1146
+GAMFVIPEQLGLF+DAFSRWE
Sbjct: 560 KNGAMFVIPEQLGLFNDAFSRWE 582
>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
Length = 463
Score = 166 bits (419), Expect = 5e-43
Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY++++V G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEVHL 459
T V +RNM+DG++ + F++Y + N DEEV L
Sbjct: 293 TNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPL 332
>gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1839
Score = 166 bits (419), Expect = 4e-41
Identities = 85/158 (53%), Positives = 115/158 (72%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
+SIFATME+DLT + L+Y IP+T+ T+ DF Q++QISI T+GY+ W+ GEANLLIT G+
Sbjct: 173 RSIFATMEVDLTRGSQLVYAIPDTMMTINDFCQHVQISILTRGYDQWQAGEANLLITRGM 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-- 354
+GRLSNT N+GFAY IQ VTD+LAS GV A+ GR Y+ +EV GRN IR +P+AT
Sbjct: 233 VGRLSNTSNVGFAYSIQGVTDYLASHGVRAIQGREYSTAEVQGRNWTIRPA-RPIATAMQ 291
Query: 355 PTEVQSRNMMDGTVRISFSNYSIDQN------NADDEE 450
P+ VQ+RN++ G + + F NY + + N+DDEE
Sbjct: 292 PSSVQTRNLLGGAISMRFGNYGVAREAEPPRYNSDDEE 329
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 166 bits (419), Expect = 4e-41
Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY++++V G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEVHL 459
T V +RNM+DG++ + F++Y + N DEEV L
Sbjct: 293 TNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPL 332
>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
Length = 1976
Score = 166 bits (419), Expect = 4e-41
Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 7/158 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY+A++V G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEV 453
T V +RNM+DG++ + F++Y + N DEE+
Sbjct: 293 TNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEI 330
>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
Length = 1979
Score = 166 bits (419), Expect = 4e-41
Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 7/158 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY+A++V G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEV 453
T V +RNM+DG++ + F++Y + N DEE+
Sbjct: 293 TNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEI 330
>gb|ATZ69526.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 165 bits (418), Expect = 5e-41
Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
+SIFATME+DLT + L+Y IP+T+ T+ DF Q++QISI T+GY+ W+ GEANLL+T G+
Sbjct: 173 RSIFATMEVDLTRGSQLVYAIPDTMMTINDFCQHVQISILTRGYDQWQAGEANLLVTRGM 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-- 354
+GRLSNT N+GFAY IQ VTD+LAS GV A+ GR Y+ +EV GRN IR +P+AT
Sbjct: 233 VGRLSNTSNVGFAYSIQGVTDYLASHGVRAIQGREYSTAEVQGRNWTIRPA-RPIATAMQ 291
Query: 355 PTEVQSRNMMDGTVRISFSNYSIDQN------NADDEE 450
P+ VQ+RN++ G + + F NY + + N+DDEE
Sbjct: 292 PSSVQTRNLLGGAISMRFGNYGVAREAEPPRYNSDDEE 329
>gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 165 bits (417), Expect = 7e-41
Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
+SIFATME+DLT + L+Y IP+T+ T+ DF Q++QISI T+GY+ W+ GEANLL+T G+
Sbjct: 173 RSIFATMEVDLTRGSQLVYAIPDTMMTINDFCQHVQISILTRGYDQWQAGEANLLLTRGM 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-- 354
+GRLSNT N+GFAY IQ VTD+LAS GV A+ GR Y+ +EV GRN IR +P+AT
Sbjct: 233 VGRLSNTSNVGFAYSIQGVTDYLASHGVRAIQGREYSTAEVQGRNWTIRPA-RPIATAMQ 291
Query: 355 PTEVQSRNMMDGTVRISFSNYSIDQN------NADDEE 450
P+ VQ+RN++ G + + F NY + + N+DDEE
Sbjct: 292 PSSVQTRNLLGGAISMRFGNYGVAREAEPPRYNSDDEE 329
>gb|ATZ69510.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 165 bits (417), Expect = 7e-41
Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
+SIFATME+DLT + L+Y IP+T+ T+ DF Q++QISI T+GY+ W+ GEANLL+T G+
Sbjct: 173 RSIFATMEVDLTRGSQLVYAIPDTMMTINDFCQHVQISILTRGYDQWQAGEANLLLTRGM 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-- 354
+GRLSNT N+GFAY IQ VTD+LAS GV A+ GR Y+ +EV GRN IR +P+AT
Sbjct: 233 VGRLSNTSNVGFAYSIQGVTDYLASHGVRAIQGREYSTAEVQGRNWTIRPA-RPIATAMQ 291
Query: 355 PTEVQSRNMMDGTVRISFSNYSIDQN------NADDEE 450
P+ VQ+RN++ G + + F NY + + N+DDEE
Sbjct: 292 PSSVQTRNLLGGAISMRFGNYGVAREAEPPRYNSDDEE 329
>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
Length = 1982
Score = 164 bits (416), Expect = 1e-40
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 7/158 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY+A++V G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEV 453
T V +RNM+DG++ + F +Y + N DEEV
Sbjct: 293 TNVGTRNMIDGSISLRFHSYQPAPDPTPVAYNQHDEEV 330
>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
Length = 1983
Score = 164 bits (415), Expect = 1e-40
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 7/158 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
QSIFATME+DLT ++Y+IP+T+ T+RDF +N+QISI TKGY NW+ GEANLL+T GI
Sbjct: 173 QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQPLATI-P 357
+GRLSNT N+ FAYQIQ+VTD+L S G+ AL GRRY+ +++ G+ +R + P + P
Sbjct: 233 VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSTADIQGQQWFLRPSNIPAVPMAP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQN------NADDEEV 453
T V +RNM+DG++ + F++Y + N DEEV
Sbjct: 293 TNVDTRNMIDGSISLRFNSYQPAPDPTPVAYNQHDEEV 330
>gb|ATZ69490.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus]
Length = 1853
Score = 164 bits (414), Expect = 2e-40
Identities = 84/157 (53%), Positives = 113/157 (71%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 QSIFATMEIDLTLRNHLIYVIPNTITTMRDFYQNIQISIQTKGYENWRQGEANLLITTGI 180
+SIFATME+DLT + L+Y IP+T+ T+ DF Q++QISI T+GY+ W+ GEANLL+T G+
Sbjct: 173 RSIFATMEVDLTRGSQLVYAIPDTMMTVNDFCQHVQISILTRGYDQWQAGEANLLVTRGM 232
Query: 181 MGRLSNTINIGFAYQIQHVTDFLASRGVSALLGRRYNASEV*GRN*IIRQTQQ-PLATIP 357
+GRLSNT N+GFAY IQ VTD+LAS GVSAL GR Y+ +EV GRN IR + + P
Sbjct: 233 VGRLSNTSNVGFAYSIQGVTDYLASHGVSALQGREYSTTEVQGRNWTIRPARPVAIPMQP 292
Query: 358 TEVQSRNMMDGTVRISFSNYSIDQ------NNADDEE 450
T VQ+RN++ G + + F+NY + +N DDEE
Sbjct: 293 TSVQTRNLVGGAISMRFNNYGPARQTENIHHNTDDEE 329
Score = 65.5 bits (158), Expect = 1e-07
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = +1
Query: 745 NSEVPRKEPQEEE---------DFINPFFHXXXXXXXXXXXXXHPSLQKLK*EMVHSGTI 897
N+++P++E +EE N +P L+K+K E+
Sbjct: 421 NTQIPQEESSDEEAQWWELCDMHISNEQMEIVAAGAEEDGWNDYPILRKMKEELAEESNT 480
Query: 898 ------TTATSPYRPPADAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSGMNNEMWN 1059
+T T PYRPP D A+ FK NE W
Sbjct: 481 KVVAMESTVTGPYRPPMDIAV--TPEGYPPAKEKSADIPLFEGYSQRGRFKRDTGNENWQ 538
Query: 1060 LPSAQQSSGAMFVIPEQLGLFDDAFSRWE 1146
LPSAQ GAM +IP LG+F++ FSRWE
Sbjct: 539 LPSAQTQQGAMLIIPHNLGMFNEVFSRWE 567