BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00039291
         (628 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   291   5e-93
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo...   290   5e-91
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   290   1e-89
gb|ABA96095.2| retrotransposon protein, putative, Ty1-copia subc...   269   4e-84
gb|KZV19365.1| retrovirus-related Pol polyprotein from transposo...   262   2e-83
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          270   4e-83
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo...   266   4e-82
gb|EEE65861.1| hypothetical protein OsJ_21651 [Oryza sativa Japo...   261   1e-81
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   273   2e-81
gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subc...   272   3e-81
emb|CAE02930.3| OSJNBa0014K14.2 [Oryza sativa Japonica Group]         263   4e-81
gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygro...   269   5e-81
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc...   271   5e-81
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   272   6e-81
gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subc...   271   6e-81
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...   271   6e-81
gb|KYP49849.1| Retrovirus-related Pol polyprotein from transposo...   251   7e-81
dbj|BAB03249.1| polyprotein [Oryza sativa]                            271   7e-81
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     271   7e-81
gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subc...   272   7e-81

>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 565

 Score =  291 bits (746), Expect = 5e-93
 Identities = 134/207 (64%), Positives = 163/207 (78%)
 Frame = -3

Query: 626 SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
           SI +M+ L+LIPK       KCE+C  AKQPRK F+    + T +LELIHSD+CDS    
Sbjct: 36  SIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDICDSNGVI 95

Query: 446 TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
           TRGG KYF+TFIDDFS+YCY YLI  K E+  KFK++KAEVENQL+K IKI+RSDRGGEY
Sbjct: 96  TRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLEKSIKILRSDRGGEY 155

Query: 266 MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
            SNE   F + +GIIH+VTPPY+PQSNG+AERKNRTLLDM+N+M++SSG+P NLWGEAL 
Sbjct: 156 SSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALF 215

Query: 86  SSCFILNRIPLKDKETTPYELWKGHKP 6
           ++C ILNRIP K+ + TPYELWK  KP
Sbjct: 216 TACHILNRIPYKNSDKTPYELWKNRKP 242


>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 714

 Score =  290 bits (743), Expect = 5e-91
 Identities = 133/207 (64%), Positives = 163/207 (78%)
 Frame = -3

Query: 626 SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
           SI +M+ L+LIPK       KCE+C  AKQPRK F+    + T +LELIHSD+CDS    
Sbjct: 364 SIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDICDSNGVI 423

Query: 446 TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
           TRGG KYF+TFIDDFS+YCY YLI  K E+  KFK++KAEVENQL++ IKI+RSDRGGEY
Sbjct: 424 TRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRSDRGGEY 483

Query: 266 MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
            SNE   F + +GIIH+VTPPY+PQSNG+AERKNRTLLDM+N+M++SSG+P NLWGEAL 
Sbjct: 484 SSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALF 543

Query: 86  SSCFILNRIPLKDKETTPYELWKGHKP 6
           ++C ILNRIP K+ + TPYELWK  KP
Sbjct: 544 TACHILNRIPYKNSDKTPYELWKNRKP 570


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 880

 Score =  290 bits (743), Expect = 1e-89
 Identities = 133/207 (64%), Positives = 163/207 (78%)
 Frame = -3

Query: 626 SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
           SI +M+ L+LIPK       KCE+C  AKQPRK F+    + T +LELIHSD+CDS    
Sbjct: 366 SIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDICDSNGVI 425

Query: 446 TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
           TRGG KYF+TFIDDFS+YCY YLI  K E+  KFK++KAEVENQL++ IKI+RSDRGGEY
Sbjct: 426 TRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRSDRGGEY 485

Query: 266 MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
            SNE   F + +GIIH+VTPPY+PQSNG+AERKNRTLLDM+N+M++SSG+P NLWGEAL 
Sbjct: 486 SSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALF 545

Query: 86  SSCFILNRIPLKDKETTPYELWKGHKP 6
           ++C ILNRIP K+ + TPYELWK  KP
Sbjct: 546 TACHILNRIPYKNSDKTPYELWKNRKP 572


>gb|ABA96095.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 585

 Score =  269 bits (688), Expect = 4e-84
 Identities = 121/206 (58%), Positives = 163/206 (79%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           ++++ ++ LIPK S+   SKC  C  +KQPRKP K  E RN   LEL+HSD+C+     T
Sbjct: 353 MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLT 412

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG +YF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQLD+KIK +RSDRGGE+ 
Sbjct: 413 KGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFF 472

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF  FC+E+GIIH+ TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 473 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLT 532

Query: 83  SCFILNRIPLKDKETTPYELWKGHKP 6
           S  +LNR+P ++K+ TPYE+W G KP
Sbjct: 533 SNHVLNRVPNRNKDKTPYEIWIGRKP 558


>gb|KZV19365.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Dorcoceras hygrometricum]
          Length = 407

 Score =  262 bits (669), Expect = 2e-83
 Identities = 125/207 (60%), Positives = 160/207 (77%)
 Frame = -3

Query: 626 SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
           ++ +++ L L+P M +N   KCE+C  AK  + PF  ++ R+T  LELIHSD+CD     
Sbjct: 156 TLKRLVKLNLLPTMDINKTHKCEVCVEAKMTKLPFHSVQ-RSTTPLELIHSDICDLKFVQ 214

Query: 446 TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
           TRGG KYFVTFIDD +RYCY YL+R KDE L  F+ +KAEVENQLD++ K IRSDRGGEY
Sbjct: 215 TRGGKKYFVTFIDDCTRYCYVYLLRGKDEALEAFQNYKAEVENQLDQR-KNIRSDRGGEY 273

Query: 266 MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
            +  F  +C ++GIIHQ T PYSPQSNGVAERKNRTL +M+N+++++SG+PQNLWGEA+L
Sbjct: 274 GA-PFDDYCVKSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLINSGLPQNLWGEAIL 332

Query: 86  SSCFILNRIPLKDKETTPYELWKGHKP 6
           S+  ILN+IP K K+ TPYELWKGHKP
Sbjct: 333 SANHILNKIPQKKKDKTPYELWKGHKP 359


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  270 bits (689), Expect = 4e-83
 Identities = 123/207 (59%), Positives = 168/207 (81%)
 Frame = -3

Query: 626  SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
            S+ K+IN++ IP   ++   KC+ C  AK  R  F+II+ RN++ L+LIHSD+CD  S  
Sbjct: 473  SLRKLINMKHIPNFQIDLKHKCKTCVEAKLTRSSFQIIQ-RNSEPLDLIHSDICDFKSIQ 531

Query: 446  TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
            TRGGNKYF+TFIDD ++YCY YL+++KDE L+KF ++K EVENQL++KIK +RSDRGGEY
Sbjct: 532  TRGGNKYFITFIDDCTKYCYVYLLKSKDEALDKFILYKNEVENQLNRKIKELRSDRGGEY 591

Query: 266  MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
            +   F++ C+++GIIHQVT PYSPQSNG+AERKNRTL +M+N+M++SSG+PQN+WGEA+L
Sbjct: 592  VV-PFMSLCEQSGIIHQVTAPYSPQSNGIAERKNRTLKEMMNAMLISSGLPQNMWGEAVL 650

Query: 86   SSCFILNRIPLKDKETTPYELWKGHKP 6
            S+ ++LN+IP K + TTPYELWKG  P
Sbjct: 651  SANYLLNKIPRKQENTTPYELWKGRSP 677


>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
          Length = 679

 Score =  266 bits (681), Expect = 4e-82
 Identities = 120/206 (58%), Positives = 162/206 (78%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           ++++ ++ LIPK S+   SKC  C  +KQPRKP K  E RN   LEL+HSD+C+     T
Sbjct: 186 MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLT 245

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG +YF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQLD+KIK +RS+RGGE+ 
Sbjct: 246 KGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSNRGGEFF 305

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF  FC+E+GIIH+ TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 306 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLT 365

Query: 83  SCFILNRIPLKDKETTPYELWKGHKP 6
           S  +LNR+P ++K  TPYE+W G KP
Sbjct: 366 SNHVLNRVPNRNKNKTPYEIWIGRKP 391


>gb|EEE65861.1| hypothetical protein OsJ_21651 [Oryza sativa Japonica Group]
          Length = 525

 Score =  261 bits (667), Expect = 1e-81
 Identities = 118/205 (57%), Positives = 158/205 (77%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           + ++ N+ L+PK +L  +SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 237 MTRLANMSLVPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 296

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG KYF+T IDD +R CY YL++TKDE L+ FK +K EVENQL++KIK +RSDRGGEY 
Sbjct: 297 KGGKKYFMTLIDDCTRVCYVYLLKTKDEALHYFKTYKTEVENQLERKIKRLRSDRGGEYF 356

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF +FC+E GIIH+ TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 357 SNEFTSFCEEFGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 416

Query: 83  SCFILNRIPLKDKETTPYELWKGHK 9
           +C +LN+IP+K KE T +E W+  K
Sbjct: 417 ACHVLNKIPMKHKEMTLFEEWERKK 441


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  273 bits (698), Expect = 2e-81
 Identities = 122/206 (59%), Positives = 165/206 (80%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            ++++ ++ LIPK S+   SKC  C  +KQPRKP K  E RN   LEL+HSD+C+     T
Sbjct: 407  MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLT 466

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG +YF+TFIDD +R+CY YL++TKDE L+ FKI+KAEVENQLD+KIK +RSDRGGE+ 
Sbjct: 467  KGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFF 526

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF  FC+E+GIIH++TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 527  SNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLT 586

Query: 83   SCFILNRIPLKDKETTPYELWKGHKP 6
            S  +LNR+P ++K+ TPYE+W G KP
Sbjct: 587  SNHVLNRVPNRNKDKTPYEIWIGRKP 612


>gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1186

 Score =  272 bits (695), Expect = 3e-81
 Identities = 122/205 (59%), Positives = 162/205 (79%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            + ++ N+ LIPK +L   SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 587  MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 646

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG KYF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY 
Sbjct: 647  KGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYF 706

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 707  SNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 766

Query: 83   SCFILNRIPLKDKETTPYELWKGHK 9
            +C +LN+IP+K KE TP+E W+  K
Sbjct: 767  ACHVLNKIPMKHKEVTPFEEWERKK 791


>emb|CAE02930.3| OSJNBa0014K14.2 [Oryza sativa Japonica Group]
          Length = 628

 Score =  263 bits (671), Expect = 4e-81
 Identities = 118/206 (57%), Positives = 161/206 (78%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           ++++ ++ LIPK S+   SKC  C  +KQPRKP    E RN   LEL+HSD+C+     T
Sbjct: 378 MSRLSSMRLIPKFSIVKGSKCHSCVQSKQPRKPHNAAEERNLAPLELLHSDLCEMNRVLT 437

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG +YF+T IDD +R+ Y YL++TKD+ L+ FKI+KAEVENQLD+KIK +RSDRGGE+ 
Sbjct: 438 KGGKRYFMTLIDDATRFYYVYLLKTKDKALDYFKIYKAEVENQLDRKIKRLRSDRGGEFF 497

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF  FC+E+GIIH+ TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 498 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLT 557

Query: 83  SCFILNRIPLKDKETTPYELWKGHKP 6
           S  +LNR+P ++K+ TPYE+W G KP
Sbjct: 558 SNHVLNRVPNRNKDKTPYEIWIGRKP 583


>gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygrometricum]
          Length = 979

 Score =  269 bits (688), Expect = 5e-81
 Identities = 127/207 (61%), Positives = 161/207 (77%)
 Frame = -3

Query: 626  SINKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTP 447
            ++ +++ L L+P M +N   KCE+C  AK  + PF  +E R+T  LELIHSD+CD     
Sbjct: 456  TLKRLVKLNLLPTMDINKTHKCEVCVEAKMTKLPFHSVE-RSTTPLELIHSDICDLKFVQ 514

Query: 446  TRGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEY 267
            TRGG KYFVTFIDD +RYCY YL+R KDE L  F+ +KAEVENQLD++IK IRSDRGGEY
Sbjct: 515  TRGGKKYFVTFIDDCTRYCYVYLLRGKDEALEAFQNYKAEVENQLDQRIKNIRSDRGGEY 574

Query: 266  MSNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALL 87
             +  F  +C ++GIIHQ T PYSPQSNGVAERKNRTL +M+N+++++SG+PQNLWGEA+L
Sbjct: 575  GA-PFDDYCVKSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNALLINSGLPQNLWGEAIL 633

Query: 86   SSCFILNRIPLKDKETTPYELWKGHKP 6
            S+  ILN+IP K K+ TPYELWKGHKP
Sbjct: 634  SANHILNKIPQKKKDKTPYELWKGHKP 660


>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1151

 Score =  271 bits (693), Expect = 5e-81
 Identities = 121/206 (58%), Positives = 164/206 (79%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           ++++ ++ LIPK S+   SKC  C  +KQPRKP K  E RN  +LEL+HSD+C+     T
Sbjct: 317 MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLALLELLHSDLCEMNGVLT 376

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG +YF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQLD+KIK +RSDRGGE+ 
Sbjct: 377 KGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFF 436

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF  FC+E+GIIH+ TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 437 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLT 496

Query: 83  SCFILNRIPLKDKETTPYELWKGHKP 6
           S  +LNR+P ++K+ TPYE+W G KP
Sbjct: 497 SNHVLNRVPNRNKDKTPYEIWIGRKP 522


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score =  272 bits (695), Expect = 6e-81
 Identities = 122/205 (59%), Positives = 162/205 (79%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            + ++ N+ LIPK +L   SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 556  LTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 615

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG KYF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY 
Sbjct: 616  KGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYF 675

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 676  SNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 735

Query: 83   SCFILNRIPLKDKETTPYELWKGHK 9
            +C +LN+IP+K KE TP+E W+  K
Sbjct: 736  ACHVLNKIPMKHKEVTPFEEWERKK 760


>gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1235

 Score =  271 bits (694), Expect = 6e-81
 Identities = 121/206 (58%), Positives = 165/206 (80%)
 Frame = -3

Query: 623 INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
           ++++ ++ LIPK S+   SKC  C  +KQPRKP K +E RN   LEL+HSD+C+     T
Sbjct: 379 MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAVEERNLAPLELLHSDLCEMNGVLT 438

Query: 443 RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
           +GG +YF+TFIDD +R+CY YL++TKDE L+ FKI+KAEV+NQLD+KIK +RSDRGGE+ 
Sbjct: 439 KGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVKNQLDRKIKRLRSDRGGEFF 498

Query: 263 SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
           SNEF  FC+E+GIIH+ TPPYSP+SNG+AERKNRTL D+VN+M+ ++G+P+  WGEALL+
Sbjct: 499 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTTGLPKAWWGEALLT 558

Query: 83  SCFILNRIPLKDKETTPYELWKGHKP 6
           S  +LNR+P ++K+ TPYE+W G KP
Sbjct: 559 SNHVLNRVPNRNKDKTPYEIWIGRKP 584


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF96500.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1240

 Score =  271 bits (694), Expect = 6e-81
 Identities = 122/203 (60%), Positives = 161/203 (79%)
 Frame = -3

Query: 617  KMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPTRG 438
            ++ N+ LIPK +L   SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T+G
Sbjct: 413  RLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKG 472

Query: 437  GNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYMSN 258
            G KYF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY SN
Sbjct: 473  GKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSN 532

Query: 257  EFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLSSC 78
            EF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L++C
Sbjct: 533  EFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC 592

Query: 77   FILNRIPLKDKETTPYELWKGHK 9
             +LN+IP+K KE TP+E W+  K
Sbjct: 593  HVLNKIPMKHKEVTPFEEWERKK 615


>gb|KYP49849.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 262

 Score =  251 bits (640), Expect = 7e-81
 Identities = 123/204 (60%), Positives = 146/204 (71%), Gaps = 1/204 (0%)
 Frame = -3

Query: 614 MINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPTRGG 435
           MI L LIPK       KCE+C  AKQPRK F+    + T +LELIHSD+CD     TRG 
Sbjct: 1   MITLNLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETWLLELIHSDICDGNGVITRGR 60

Query: 434 NKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYMSNE 255
            KYF+TFIDDFS+Y Y YLI  K E+  KFK++K E ENQL+K IKI+R D GGEY SNE
Sbjct: 61  KKYFITFIDDFSKYFYVYLIIHKSELFEKFKVYKEEDENQLEKSIKILRYDTGGEYSSNE 120

Query: 254 FITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVN-SMMLSSGVPQNLWGEALLSSC 78
              F + +GIIH+VTPPY+PQSNG+AERKN TLLDM+N +  LSSG+P NLWGEAL ++ 
Sbjct: 121 MGEFFETHGIIHEVTPPYAPQSNGIAERKNCTLLDMINVTTRLSSGLPDNLWGEALFTAR 180

Query: 77  FILNRIPLKDKETTPYELWKGHKP 6
            ILNRIP K  +  PYELWK  KP
Sbjct: 181 HILNRIPYKILDKNPYELWKNRKP 204


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  271 bits (694), Expect = 7e-81
 Identities = 122/205 (59%), Positives = 162/205 (79%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            + ++ N+ LIPK +L   SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 411  MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 470

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG KYF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY 
Sbjct: 471  KGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYF 530

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 531  SNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 590

Query: 83   SCFILNRIPLKDKETTPYELWKGHK 9
            +C +LN+IP+K KE TP+E W+  K
Sbjct: 591  ACHVLNKIPMKHKEVTPFEEWERKK 615


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  271 bits (694), Expect = 7e-81
 Identities = 122/205 (59%), Positives = 162/205 (79%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            + ++ N+ LIPK +L  +SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 411  MTRLANMSLIPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 470

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG KYF T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY 
Sbjct: 471  KGGKKYFTTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYF 530

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 531  SNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 590

Query: 83   SCFILNRIPLKDKETTPYELWKGHK 9
            +C +LN+IP+K KE TP+E W+  K
Sbjct: 591  ACHVLNKIPMKHKEVTPFEEWERKK 615


>gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1361

 Score =  272 bits (695), Expect = 7e-81
 Identities = 122/205 (59%), Positives = 162/205 (79%)
 Frame = -3

Query: 623  INKMINLELIPKMSLNSNSKCEICASAKQPRKPFKIIESRNTQILELIHSDVCDSTSTPT 444
            + ++ N+ LIPK +L   SKC  C  +KQPRKP K  E+RN   LEL+HSD+C+     T
Sbjct: 578  MTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLT 637

Query: 443  RGGNKYFVTFIDDFSRYCYTYLIRTKDEVLNKFKIFKAEVENQLDKKIKIIRSDRGGEYM 264
            +GG KYF+T IDD +R+CY YL++TKDE L+ FKI+KAEVENQL++KIK +RSDRGGEY 
Sbjct: 638  KGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYF 697

Query: 263  SNEFITFCQENGIIHQVTPPYSPQSNGVAERKNRTLLDMVNSMMLSSGVPQNLWGEALLS 84
            SNEF +FC+E GIIH++TPPYSPQSNGVAERKNRTL +MVN+M+ ++G+ +  WGEA+L+
Sbjct: 698  SNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLT 757

Query: 83   SCFILNRIPLKDKETTPYELWKGHK 9
            +C +LN+IP+K KE TP+E W+  K
Sbjct: 758  ACHVLNKIPMKHKEVTPFEEWERKK 782