BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00038542
         (434 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposo...   101   3e-22
gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposo...    90   4e-18
gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposo...    85   2e-16
ref|XP_017638285.1| PREDICTED: uncharacterized protein LOC108479...    70   2e-13
ref|XP_018810017.1| PREDICTED: uncharacterized protein LOC108982...    70   3e-11
gb|PKU66893.1| Retrovirus-related Pol polyprotein from transposo...    70   5e-11
ref|XP_016684266.1| PREDICTED: uncharacterized protein LOC107902...    55   9e-11
ref|XP_018851975.1| PREDICTED: uncharacterized protein LOC109014...    66   1e-10
gb|PKA50321.1| Retrovirus-related Pol polyprotein from transposo...    68   2e-10
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa]                         68   2e-10
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]         68   2e-10
ref|XP_016728410.1| PREDICTED: uncharacterized protein LOC107939...    68   2e-10
ref|XP_018843175.1| PREDICTED: uncharacterized protein LOC109007...    66   5e-10
gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposo...    67   6e-10
ref|XP_018814598.1| PREDICTED: uncharacterized protein LOC108986...    66   9e-10
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...    66   1e-09
gb|OMO68753.1| Integrase, catalytic core [Corchorus capsularis]        56   1e-09
ref|XP_021621448.1| uncharacterized protein LOC110621473 [Maniho...    65   2e-09
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    64   5e-09
ref|XP_023158131.1| uncharacterized protein LOC103653943 isoform...    63   9e-09

>gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 494

 Score =  101 bits (251), Expect = 3e-22
 Identities = 50/90 (55%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = -2

Query: 310 VQFKLAM--DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVR 137
           +QFKL M  DR T   LL+GG  + LYHIP+PS  AL+ +  +  +WHARL H SLR V 
Sbjct: 5   IQFKLVMVQDRATGKILLRGGTKNGLYHIPVPSPTALVGERTTKLSWHARLGHPSLRTVH 64

Query: 136 QIINHYGLPTNNVSLSQICDACMKSKSHKV 47
           QII  YGLPT+  + S+IC ACMK+KSHK+
Sbjct: 65  QIIQKYGLPTSPPTTSRICSACMKAKSHKL 94


>gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 696

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 43/81 (53%), Positives = 54/81 (66%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYGLP 110
           DR T   LL+G   + LYHIP+PS  AL+ +  +   WHARL H  LR V QII  YGLP
Sbjct: 419 DRATGKILLRGETKNGLYHIPVPSPTALIGERTTKLLWHARLGHPCLRTVHQIIQKYGLP 478

Query: 109 TNNVSLSQICDACMKSKSHKV 47
           T+  + S+IC ACMK+KSHK+
Sbjct: 479 TSPPTTSRICSACMKAKSHKL 499


>gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 475

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYGLP 110
           D+  R  LL+GG  + LYH+P  S  A + +  + ++WHARL H SLR+V  II  YGLP
Sbjct: 331 DQANRKILLRGGTKNSLYHLP-QSPTAFIGERTNKSSWHARLGHPSLRIVHHIICKYGLP 389

Query: 109 TNNVSLSQICDACMKSKSHKVP 44
            +  S S+IC ACMK+KSHK+P
Sbjct: 390 ISPSSKSRICSACMKAKSHKLP 411


>ref|XP_017638285.1| PREDICTED: uncharacterized protein LOC108479932 [Gossypium
           arboreum]
          Length = 985

 Score = 69.7 bits (169), Expect(2) = 2e-13
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 14/100 (14%)
 Frame = -2

Query: 301 KLAMDRNTRTTLLQGGIIDDLYHIPLPS-----KVALLNQ---HASS------TTWHARL 164
           + A D +T+  LL+G + D LYH  + S     KVA ++     AS       T WH RL
Sbjct: 551 QFAKDNSTQEILLRGQVHDGLYHFSVASPGSSTKVAQVHNIGFQASQLVPNDFTLWHNRL 610

Query: 163 SHLSLRLVRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
            H S R+V  ++N  G+ +NN +LS IC AC K KSHK+P
Sbjct: 611 GHPSARIVTDVLNKCGIVSNNKNLSNICVACQKGKSHKLP 650



 Score = 33.5 bits (75), Expect(2) = 2e-13
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 389 YPDSRATHHVTLDFNSLQEVVPYDGPGTIQVGNG 288
           YPDS A+HHV  +   L    PY     + +GNG
Sbjct: 478 YPDSGASHHVCQNAADLNTTTPYSSTSELLMGNG 511


>ref|XP_018810017.1| PREDICTED: uncharacterized protein LOC108982976 [Juglans regia]
          Length = 479

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKV-----ALLNQHASSTTWHARLSHLSLRLVRQIIN 125
           D  TR  LL+G     LY  P PS +     ALL+  A  TTWH+RL H S+++VR II+
Sbjct: 376 DEATRNILLRGKAEAGLY--PFPSTISRLPQALLSNRAPLTTWHSRLGHPSMKIVRNIIS 433

Query: 124 HYGLPTNNVSLSQICDACMKSKSHKVP 44
            + LP  +  +  +C AC + KSH++P
Sbjct: 434 RFSLPITSNKIDSVCAACQQGKSHQLP 460


>gb|PKU66893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1230

 Score = 69.7 bits (169), Expect = 5e-11
 Identities = 36/81 (44%), Positives = 48/81 (59%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYGLP 110
           D  T  T+L+G   D LY IP  +  AL NQH S+TTWHARL H  L+L++ +  H    
Sbjct: 282 DNRTNQTILKGRSRDGLYVIPSTTISALHNQHKSTTTWHARLGHPHLQLLQHLARHNSTI 341

Query: 109 TNNVSLSQICDACMKSKSHKV 47
             + S S  CD+C  +KSHK+
Sbjct: 342 CISTSTSFQCDSCNVAKSHKL 362


>ref|XP_016684266.1| PREDICTED: uncharacterized protein LOC107902631 [Gossypium
           hirsutum]
          Length = 730

 Score = 55.5 bits (132), Expect(2) = 9e-11
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
 Frame = -2

Query: 301 KLAMDRNTRTTLLQGGIIDDLYHIPLP------------SKVALLNQHASS---TTWHAR 167
           +L+ D  T+  L++G I + LY   LP            ++V    QH  S   + WH R
Sbjct: 545 RLSNDNVTQEILMKGRIHNGLYQFSLPDGSIPRMSHPSAAQVEYSTQHDESQVFSLWHKR 604

Query: 166 LSHLSLRLVRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
           L H S  +V+ ++N      N  + S +C AC K K HK+P
Sbjct: 605 LGHPSSNVVKNVLNKCQFRMNKTAFSDVCTACKKGKFHKLP 645



 Score = 38.5 bits (88), Expect(2) = 9e-11
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -1

Query: 389 YPDSRATHHVTLDFNSLQEVVPYDGPGTIQVGNGS 285
           YPDS A++HV  D ++L   VPY G  +I +G+G+
Sbjct: 491 YPDSGASNHVCRDSSALHNAVPYSGTSSILMGDGT 525


>ref|XP_018851975.1| PREDICTED: uncharacterized protein LOC109014102, partial [Juglans
           regia]
          Length = 156

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
 Frame = -2

Query: 292 MDRNTRTTLLQGGIIDDLYHIP--LPSKV---ALLNQHASSTTWHARLSHLSLRLVRQII 128
           +D  T T LL+G + + LY     +PS     AL+ +  + + WH+RL H SL+LV +II
Sbjct: 69  LDSTTGTPLLRGPMRNGLYSFSNIIPSATSAQALIGERTTPSQWHSRLGHPSLQLVSRII 128

Query: 127 NHYGLPTNNVSLSQICDACMKSKSHKVP 44
           + Y LP ++ S S  C AC  +KSH++P
Sbjct: 129 SKYNLPASSPSTSTSCSACRAAKSHQLP 156


>gb|PKA50321.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 335

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 36/77 (46%), Positives = 48/77 (62%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYGLP 110
           D+ TR  LL+ GI + LYH+   S  A + +  S ++WHARL H SLR+V   I+ YGLP
Sbjct: 258 DQATRKILLRRGIKNGLYHLQ-QSPTAFIGERTSKSSWHARLGHPSLRIVHHSIHKYGLP 316

Query: 109 TNNVSLSQICDACMKSK 59
                +SQIC A MK+K
Sbjct: 317 ILPSFVSQICSAFMKAK 333


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa]
          Length = 1087

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
 Frame = -2

Query: 307 QFKLAMDRNTRTTLLQGGIIDDLYHIPLPS-----KVALLNQHASSTTWHARLSHLSLRL 143
           +F    D+ T++TLLQG     LY IPL S     + AL++  ++ + WH+RL H S  +
Sbjct: 398 KFFCVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQALVSTSSAESRWHSRLGHPSFSV 457

Query: 142 VRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
           V +++  + +P +     ++CDAC ++KSH++P
Sbjct: 458 VSRVLRKHNIPVSESREERVCDACQQAKSHQLP 490


>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
          Length = 1131

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
 Frame = -2

Query: 307 QFKLAMDRNTRTTLLQGGIIDDLYHIPLPS-----KVALLNQHASSTTWHARLSHLSLRL 143
           +F    D+ T++TLLQG     LY IPL S     + AL++  ++ + WH+RL H S  +
Sbjct: 398 KFFCVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQALVSTSSAESRWHSRLGHPSFSV 457

Query: 142 VRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
           V +++  + +P +     ++CDAC ++KSH++P
Sbjct: 458 VSRVLRKHNIPVSESREERVCDACQQAKSHQLP 490


>ref|XP_016728410.1| PREDICTED: uncharacterized protein LOC107939584 [Gossypium
           hirsutum]
          Length = 959

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 14/100 (14%)
 Frame = -2

Query: 301 KLAMDRNTRTTLLQGGIIDDLYHIPLPS-----KVALLNQ---HASS------TTWHARL 164
           + A D +T+  LL+G + D LYH  + S     KVA ++     AS       T WH RL
Sbjct: 525 QFAKDNSTQEILLRGQVRDGLYHFSVASPGSSTKVAQVHNIGFQASQLVPDDFTLWHNRL 584

Query: 163 SHLSLRLVRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
            H S R+V  ++N  G+ +NN +LS IC AC K K HK+P
Sbjct: 585 GHPSARIVTDVLNKCGIVSNNKNLSNICVACQKGKPHKLP 624


>ref|XP_018843175.1| PREDICTED: uncharacterized protein LOC109007783 [Juglans regia]
          Length = 268

 Score = 65.9 bits (159), Expect = 5e-10
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
 Frame = -2

Query: 292 MDRNTRTTLLQGGIIDDLYHIP--LPSKV---ALLNQHASSTTWHARLSHLSLRLVRQII 128
           +D  T T LL+G + + LY     +PS     AL+ +  + + WH+RL H SL+LV +II
Sbjct: 69  LDSTTGTPLLRGPMRNGLYSFSNIIPSATSAQALIGERTTPSQWHSRLGHPSLQLVSRII 128

Query: 127 NHYGLPTNNVSLSQICDACMKSKSHKVP 44
           + Y LP ++ S S  C AC  +KSH++P
Sbjct: 129 SKYNLPASSPSTSTSCSACRAAKSHQLP 156


>gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1221

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 34/81 (41%), Positives = 46/81 (56%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYGLP 110
           D  T  T+L+G   D LY IP  S  +  NQH S+TTWHARL H  L+ ++ +  H    
Sbjct: 282 DNQTNQTILRGRSRDGLYVIPSTSSPSFHNQHKSTTTWHARLGHPHLQQLQHLARHNSTI 341

Query: 109 TNNVSLSQICDACMKSKSHKV 47
             + S S  CD+C  +KSHK+
Sbjct: 342 CISTSSSFQCDSCNVAKSHKL 362


>ref|XP_018814598.1| PREDICTED: uncharacterized protein LOC108986442, partial [Juglans
           regia]
          Length = 355

 Score = 65.9 bits (159), Expect = 9e-10
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
 Frame = -2

Query: 292 MDRNTRTTLLQGGIIDDLYHIP--LPSKV---ALLNQHASSTTWHARLSHLSLRLVRQII 128
           +D  T T LL+G + + LY     +PS     AL+ +  + + WH+RL H SL+LV +II
Sbjct: 69  LDSTTGTPLLRGPMRNGLYSFSNIIPSATSAQALIGERTTPSQWHSRLGHPSLQLVSRII 128

Query: 127 NHYGLPTNNVSLSQICDACMKSKSHKVP 44
           + Y LP ++ S S  C AC  +KSH++P
Sbjct: 129 SKYNLPASSPSTSTSCSACRAAKSHQLP 156


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLP-------SKVALLNQHASSTT------WHARLSHLSL 149
           D+ T+  LL+GG+   LY +P         ++V  +   +SST+      WH RL H SL
Sbjct: 461 DQKTQAILLKGGLDKGLYSVPSAYSSHAPQARVFQIFSTSSSTSIDSMRLWHNRLGHPSL 520

Query: 148 RLVRQIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
            +V +++NHY LP  ++    +CD+C  +KSHK+P
Sbjct: 521 AIVNKVLNHYNLPVFSLQNKLLCDSCQLAKSHKLP 555


>gb|OMO68753.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1059

 Score = 55.8 bits (133), Expect(2) = 1e-09
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
 Frame = -2

Query: 298 LAMDRNTRTTLLQGGIIDDLYHIP-----LPSK-VALLNQHASSTTWHARLSHLSLRLVR 137
           + +D +TR  L+QG   D +Y  P     L  K +AL+    +   WH RL H S + ++
Sbjct: 268 ILVDLSTRKPLVQGLNKDGVYEFPPADSLLEGKTLALVGTRQNKRIWHQRLGHPSSQTLQ 327

Query: 136 QIINHYGLPTNNVSLSQICDACMKSKSHKVP 44
            ++NH+ LP    S +++C +C  +K HK+P
Sbjct: 328 FLVNHFDLPCFKNSATELCTSCACNKIHKLP 358



 Score = 34.3 bits (77), Expect(2) = 1e-09
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 383 DSRATHHVTLDFNSLQEVVPYDGPGTIQVGNGS 285
           D+ A+HHVT     L    PYDG   + VGNG+
Sbjct: 212 DTGASHHVTTKLEHLDLNTPYDGTDELYVGNGT 244


>ref|XP_021621448.1| uncharacterized protein LOC110621473 [Manihot esculenta]
          Length = 535

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIP--LPSKVALLNQHASSTTWHARLSHLSLRLVRQIINHYG 116
           D  TR TL +G   + LY  P  LPS+  +     S  TWHARL+H SL  VR++++   
Sbjct: 184 DLETRATLFKGLSKNGLYPFPVELPSRSVIQANSTSLCTWHARLNHTSLSTVRRLVSSRI 243

Query: 115 LPTNNVSLSQICDACMKSKSHKV 47
           + ++N S S +C AC+ SK HKV
Sbjct: 244 IDSSNKSSSTLCQACVTSKIHKV 266


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = -2

Query: 289 DRNTRTTLLQGGIIDDLYHIPLPS-KVALLNQHASSTTWHARLSHLSLRLVRQIINHYGL 113
           D+ TR TLL+G     LY +P  S K A      S   WH RL H S+  V+Q++N + L
Sbjct: 415 DQITRKTLLKGRSWRRLYPLPHSSLKQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSL 474

Query: 112 PTNNVSLSQICDACMKSKSHKVP 44
           P +++S   +C+AC ++KSH++P
Sbjct: 475 PCSDLSSESVCNACQQAKSHQLP 497


>ref|XP_023158131.1| uncharacterized protein LOC103653943 isoform X1 [Zea mays]
 ref|XP_023158132.1| uncharacterized protein LOC103653943 isoform X1 [Zea mays]
          Length = 670

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
 Frame = -2

Query: 304 FKLAMDRNTRTTLLQGGIIDDLYHIPLPS----KVALLNQHASSTTWHARLSHLSLRLVR 137
           F L  DR+TRTTLL+G     LY  PLPS    K+AL     S   WH RL H S ++V 
Sbjct: 412 FFLVKDRDTRTTLLKGNCHRGLY--PLPSSCHKKLALGVNKPSLVRWHDRLGHPSFQVVE 469

Query: 136 QIINHYGLPTNNVSLSQ-ICDACMKSKSHKVP 44
           +++  Y LP    S  + +C  C ++KSH++P
Sbjct: 470 RVLRDYNLPHQVESNKEYVCGPCQQAKSHQLP 501