BLASTX nr result
ID: Cheilocostus21_contig00038356
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00038356
(2070 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS74480.1| hypothetical protein M569_00269, partial [Genlise... 295 e-114
gb|OTG02813.1| putative DNA-directed RNA polymerase, subunit bet... 293 e-112
gb|OTF84746.1| putative RNA polymerase, beta subunit, protrusion... 293 e-112
gb|ATI24745.1| RNA polymerase beta (plastid) [Plukenetia volubilis] 343 e-102
gb|ANQ46316.1| rpoC1 (chloroplast) [Pogostemon cablin] 310 5e-99
gb|AON75821.1| RNA polymerase beta' subunit (chloroplast) [Popul... 309 7e-99
gb|AII18578.1| RNA polymerase beta subunit (chloroplast) [Viburn... 309 1e-98
gb|AMO44331.1| RNA polymerase beta largest subunit, partial (chl... 308 1e-98
gb|AII18577.1| RNA polymerase beta subunit (chloroplast) [Viburn... 308 1e-98
ref|YP_009049675.1| hypothetical protein (mitochondrion) [Capsic... 308 3e-98
gb|AON75811.1| RNA polymerase beta' subunit (chloroplast) [Popul... 307 4e-98
gb|AJO25103.1| RNA polymerase beta (chloroplast) [Solanum lycope... 307 4e-98
ref|YP_009336368.1| RNA polymerase beta (chloroplast) [Nicotiana... 307 4e-98
ref|WP_082924808.1| hypothetical protein [Paenarthrobacter nicot... 306 8e-98
dbj|BAC77550.1| RNA polymerase beta' subunit, partial (chloropla... 306 1e-97
ref|XP_013443683.1| DNA-directed RNA polymerase subunit beta [Me... 235 1e-97
gb|AQM54407.1| RNA polymerase beta' subunit, partial (chloroplas... 305 3e-97
dbj|BAC77573.1| RNA polymerase beta' subunit, partial (chloropla... 302 3e-96
ref|WP_042855006.1| hypothetical protein [Staphylococcus aureus] 302 3e-96
gb|KJB30917.1| hypothetical protein B456_005G1677001, partial [G... 310 4e-96
>gb|EPS74480.1| hypothetical protein M569_00269, partial [Genlisea aurea]
Length = 1213
Score = 295 bits (755), Expect(2) = e-114
Identities = 142/163 (87%), Positives = 148/163 (90%)
Frame = -2
Query: 1190 ELSD**EGSLI*MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPY 1011
EL+ E SLI +N NF SMIDRYKHQQLRIGLVS +QI+AWA KILPNG+IVGEVTKPY
Sbjct: 1051 ELNHCLEESLIGINHNFSSMIDRYKHQQLRIGLVSPEQIRAWATKILPNGKIVGEVTKPY 1110
Query: 1010 TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRR 831
TFHYKTNKPE DGLFCERIFGPIKSGICACGNYRVI EK+ P FCEQCGVEFVDSRIRR
Sbjct: 1111 TFHYKTNKPEMDGLFCERIFGPIKSGICACGNYRVIRDEKDGPNFCEQCGVEFVDSRIRR 1170
Query: 830 YQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 702
YQMGYIKLACPVTHVWYLK LPSYIANLLDKPLKELEGLVYCD
Sbjct: 1171 YQMGYIKLACPVTHVWYLKCLPSYIANLLDKPLKELEGLVYCD 1213
Score = 147 bits (370), Expect(2) = e-114
Identities = 73/81 (90%), Positives = 75/81 (92%)
Frame = -3
Query: 1444 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGATIIGEKVSNPEDAP 1265
RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLG TIIG + NP+D P
Sbjct: 976 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPQDTP 1035
Query: 1264 ESFRLLVRELRSLALELNHFL 1202
ESFRLLVRELRSLALELNH L
Sbjct: 1036 ESFRLLVRELRSLALELNHCL 1056
>gb|OTG02813.1| putative DNA-directed RNA polymerase, subunit beta-prime,
DNA-directed RNA polymerase, subunit 2 [Helianthus
annuus]
Length = 790
Score = 293 bits (750), Expect(2) = e-112
Identities = 142/164 (86%), Positives = 145/164 (88%)
Frame = -2
Query: 1190 ELSD**EGSLI*MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPY 1011
EL+ EGSLI M Q F SMIDRY HQQLRIGLVS QQI W+ KILPNGEIVGEVTKPY
Sbjct: 327 ELNHFLEGSLIEMKQKFSSMIDRYTHQQLRIGLVSPQQISTWSKKILPNGEIVGEVTKPY 386
Query: 1010 TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRR 831
TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIG EKEDP+FCEQCGVEFVDSRIRR
Sbjct: 387 TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRR 446
Query: 830 YQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
YQMGYIKLA PV HVWYLKRLPSYI NLLDKPL ELE LVYC V
Sbjct: 447 YQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNELEDLVYCSV 490
Score = 142 bits (358), Expect(2) = e-112
Identities = 70/81 (86%), Positives = 74/81 (91%)
Frame = -3
Query: 1444 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGATIIGEKVSNPEDAP 1265
RAK+GGQRVGEMEVWALEGFGVA+ILQEMLTYKSDHIRARQEVLG I G ++ PEDAP
Sbjct: 252 RAKKGGQRVGEMEVWALEGFGVAYILQEMLTYKSDHIRARQEVLGTIIFGGRIPTPEDAP 311
Query: 1264 ESFRLLVRELRSLALELNHFL 1202
ESFRL VRELRSLALELNHFL
Sbjct: 312 ESFRLFVRELRSLALELNHFL 332
>gb|OTF84746.1| putative RNA polymerase, beta subunit, protrusion (plastid)
[Helianthus annuus]
Length = 3147
Score = 293 bits (749), Expect(2) = e-112
Identities = 141/164 (85%), Positives = 146/164 (89%)
Frame = -2
Query: 1190 ELSD**EGSLI*MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPY 1011
EL+ EGSLI M Q F SMIDRY HQQLRIGLVS QQI W+ KILPNGEIVGEVTKPY
Sbjct: 1042 ELNHFLEGSLIEMKQKFSSMIDRYTHQQLRIGLVSPQQISTWSKKILPNGEIVGEVTKPY 1101
Query: 1010 TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRR 831
TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIG EKEDP+FCEQCGVEFVDSRIRR
Sbjct: 1102 TFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRR 1161
Query: 830 YQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
YQMGYIKLA PV HVWYLKRLPSYI NLLDKPL ELE LVYC++
Sbjct: 1162 YQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNELEDLVYCEL 1205
Score = 142 bits (358), Expect(2) = e-112
Identities = 70/81 (86%), Positives = 74/81 (91%)
Frame = -3
Query: 1444 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGATIIGEKVSNPEDAP 1265
RAK+GGQRVGEMEVWALEGFGVA+ILQEMLTYKSDHIRARQEVLG I G ++ PEDAP
Sbjct: 967 RAKKGGQRVGEMEVWALEGFGVAYILQEMLTYKSDHIRARQEVLGTIIFGGRIPTPEDAP 1026
Query: 1264 ESFRLLVRELRSLALELNHFL 1202
ESFRL VRELRSLALELNHFL
Sbjct: 1027 ESFRLFVRELRSLALELNHFL 1047
>gb|ATI24745.1| RNA polymerase beta (plastid) [Plukenetia volubilis]
Length = 941
Score = 343 bits (879), Expect = e-102
Identities = 202/344 (58%), Positives = 222/344 (64%), Gaps = 11/344 (3%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIGLVS QQI AWANKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGLVSPQQISAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVI EKE PKFCEQCGVEFVDSR+RRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIRNEKEKPKFCEQCGVEFVDSRVRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDQN*N--FTDSD*ETVIPFNPIGMPP 621
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FD+N + FT + +TVIPF
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDVCFDRNYDYDFTVLECKTVIPF------- 173
Query: 620 ALTCIWAEVE-VT*NSEL*VYSILPSERGIDLWS----IPYK*ELLVIPREKRLFLGGST 456
C +++ N +L + + + + WS + K E LV+PRE RL+
Sbjct: 174 IFGCPGSDMSRERSNMKLRIMGVFNTPKSKRNWSMVDAVTKKSEFLVVPRENRLYFYSKN 233
Query: 455 ISFLYFXXXXXXXXXXILTLSL*RIERFCL--SKQI*HGYRSLSIAYML*GVSWHNHRGE 282
++ CL S QI HGYRSL IAY L +HRG
Sbjct: 234 R------------------------KKLCLYSSNQICHGYRSLYIAYRL-----SSHRG- 263
Query: 281 *GPKRSNRTIYRQVNPLRVPKYSFNFK--GIHHLTGSRLLKNLI 156
T + K N K GI H GSRLLKN I
Sbjct: 264 ---ITEFETSEIESKETSTNKSLMNSKVLGISHSKGSRLLKNFI 304
>gb|ANQ46316.1| rpoC1 (chloroplast) [Pogostemon cablin]
Length = 152
Score = 310 bits (793), Expect = 5e-99
Identities = 146/152 (96%), Positives = 146/152 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NFYSMID YKHQQLRIGLVS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNPNFYSMIDWYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>gb|AON75821.1| RNA polymerase beta' subunit (chloroplast) [Populus adenopoda]
gb|AQM54413.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
tomentosa]
Length = 152
Score = 309 bits (792), Expect = 7e-99
Identities = 144/152 (94%), Positives = 147/152 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF+SMIDRYKHQQLRIG VS QQI AW NKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFFSMIDRYKHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKE+PKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLK+LEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKQLEGLVYCDV 152
>gb|AII18578.1| RNA polymerase beta subunit (chloroplast) [Viburnum amplificatum]
Length = 152
Score = 309 bits (791), Expect = 1e-98
Identities = 145/152 (95%), Positives = 145/152 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI WANKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGIC CGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICTCGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>gb|AMO44331.1| RNA polymerase beta largest subunit, partial (chloroplast) [Panax
ginseng]
gb|AMO44333.1| RNA polymerase beta largest subunit, partial (chloroplast) [Panax
ginseng]
Length = 151
Score = 308 bits (790), Expect = 1e-98
Identities = 145/151 (96%), Positives = 145/151 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI WANKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCD 702
THVWYLKRLPSYIANLLDKPLKELEGLVYCD
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCD 151
>gb|AII18577.1| RNA polymerase beta subunit (chloroplast) [Viburnum acerifolium]
gb|AII18579.1| RNA polymerase beta subunit (chloroplast) [Viburnum carlesii]
gb|AII18580.1| RNA polymerase beta subunit (chloroplast) [Viburnum cassinoides]
gb|AII18581.1| RNA polymerase beta subunit (chloroplast) [Viburnum clemensae]
gb|AII18582.1| RNA polymerase beta subunit (chloroplast) [Viburnum cylindricum]
gb|AII18583.1| RNA polymerase beta subunit (chloroplast) [Viburnum dentatum]
gb|AII18584.1| RNA polymerase beta subunit (chloroplast) [Viburnum dilatatum]
gb|AII18585.1| RNA polymerase beta subunit (chloroplast) [Viburnum erubescens]
gb|AII18586.1| RNA polymerase beta subunit (chloroplast) [Viburnum grandiflorum]
gb|AII18587.1| RNA polymerase beta subunit (chloroplast) [Viburnum lantanoides]
gb|AII18588.1| RNA polymerase beta subunit (chloroplast) [Viburnum lentago]
gb|AII18589.1| RNA polymerase beta subunit (chloroplast) [Viburnum lutescens]
gb|AII18590.1| RNA polymerase beta subunit (chloroplast) [Viburnum molle]
gb|AII18591.1| RNA polymerase beta subunit (chloroplast) [Viburnum opulus]
gb|AII18592.1| RNA polymerase beta subunit (chloroplast) [Viburnum plicatum]
gb|AII18593.1| RNA polymerase beta subunit (chloroplast) [Viburnum punctatum]
gb|AII18594.1| RNA polymerase beta subunit (chloroplast) [Viburnum sieboldii]
gb|AII18595.1| RNA polymerase beta subunit (chloroplast) [Viburnum taiwanianum]
gb|AII18596.1| RNA polymerase beta subunit (chloroplast) [Viburnum tinus]
gb|AII18597.1| RNA polymerase beta subunit (chloroplast) [Viburnum triphyllum]
gb|AII18598.1| RNA polymerase beta subunit (chloroplast) [Viburnum vernicosum]
Length = 152
Score = 308 bits (790), Expect = 1e-98
Identities = 145/152 (95%), Positives = 145/152 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI WANKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGIC CGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICTCGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>ref|YP_009049675.1| hypothetical protein (mitochondrion) [Capsicum annuum]
ref|YP_009049784.1| hypothetical protein (mitochondrion) [Capsicum annuum]
gb|AIG89836.1| hypothetical protein (mitochondrion) [Capsicum annuum]
gb|AIG90033.1| hypothetical protein (mitochondrion) [Capsicum annuum]
gb|AIG90142.1| hypothetical protein (mitochondrion) [Capsicum annuum]
Length = 152
Score = 308 bits (788), Expect = 3e-98
Identities = 145/152 (95%), Positives = 146/152 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN+NF SMIDRYKHQQLRIG VS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNKNFSSMIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>gb|AON75811.1| RNA polymerase beta' subunit (chloroplast) [Populus lasiocarpa]
gb|AON75813.1| RNA polymerase beta' subunit (chloroplast) [Populus tremuloides]
gb|AON75815.1| RNA polymerase beta' subunit (chloroplast) [Populus tremula]
gb|AON75817.1| RNA polymerase beta' subunit (chloroplast) [Populus davidiana]
gb|AON75819.1| RNA polymerase beta' subunit (chloroplast) [Populus euphratica]
gb|AON75823.1| RNA polymerase beta' subunit (chloroplast) [Salix arbutifolia]
gb|AON75825.1| RNA polymerase beta' subunit (chloroplast) [Salix triandra]
gb|AON75827.1| RNA polymerase beta' subunit (chloroplast) [Populus grandidentata]
gb|AON75829.1| RNA polymerase beta' subunit (chloroplast) [Populus hopeiensis]
gb|AQM54375.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
trichocarpa]
gb|AQM54377.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
heterophylla]
gb|AQM54379.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
ilicifolia]
gb|AQM54381.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
deltoides]
gb|AQM54383.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus nigra]
gb|AQM54385.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
pruinosa]
gb|AQM54387.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
balsamifera]
gb|AQM54389.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
angustifolia]
gb|AQM54391.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
mexicana]
gb|AQM54393.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
fremontii]
gb|AQM54395.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
wilsonii]
gb|AQM54397.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
pamirica]
gb|AQM54399.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
szechuanica]
gb|AQM54401.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
suaveolens]
gb|AQM54403.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
laurifolia]
gb|AQM54405.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
przewalskii]
gb|AQM54409.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus simonii]
gb|AQM54411.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
talassica]
gb|AQM54415.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
afghanica]
gb|AQM54417.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus alba]
Length = 152
Score = 307 bits (787), Expect = 4e-98
Identities = 144/152 (94%), Positives = 146/152 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI AW NKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKE+PKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLK+LEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKQLEGLVYCDV 152
>gb|AJO25103.1| RNA polymerase beta (chloroplast) [Solanum lycopersicum]
gb|ALN11564.1| RNA polymerase beta (chloroplast) [Iochroma edule]
gb|AMX21679.1| RNA polymerase beta (chloroplast) [Iochroma parvifolium]
gb|PHT61089.1| hypothetical protein T459_35062 [Capsicum annuum]
gb|PHT87510.1| hypothetical protein T459_09616 [Capsicum annuum]
Length = 152
Score = 307 bits (787), Expect = 4e-98
Identities = 145/152 (95%), Positives = 145/152 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NF SMIDRYKHQQLRIG VS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNNNFSSMIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>ref|YP_009336368.1| RNA polymerase beta (chloroplast) [Nicotiana otophora]
gb|ALT14463.1| RNA polymerase beta (chloroplast) [Nicotiana otophora]
Length = 155
Score = 307 bits (787), Expect = 4e-98
Identities = 146/155 (94%), Positives = 146/155 (94%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NF SMIDRYKHQQLRIG VS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNNNFSSMIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVI EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIEDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FD 690
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FD
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFD 155
>ref|WP_082924808.1| hypothetical protein [Paenarthrobacter nicotinovorans]
Length = 152
Score = 306 bits (785), Expect = 8e-98
Identities = 144/152 (94%), Positives = 145/152 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NF SMIDRYKHQQLRIG VS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNHNFSSMIDRYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIAN+LDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANILDKPLKELEGLVYCDV 152
>dbj|BAC77550.1| RNA polymerase beta' subunit, partial (chloroplast) [Nicotiana
sylvestris]
Length = 150
Score = 306 bits (783), Expect = 1e-97
Identities = 144/150 (96%), Positives = 144/150 (96%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NF SMIDRYKHQQLRIGLVS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNNNFSSMIDRYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYC 705
THVWYLKRLPSYIANLLDKPLKELEGLVYC
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYC 150
>ref|XP_013443683.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gb|KEH17708.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 3148
Score = 235 bits (599), Expect(2) = 1e-97
Identities = 110/134 (82%), Positives = 118/134 (88%)
Frame = -2
Query: 1094 LVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGN 915
LVS + +AWANK LPNGE VGEVT+P TFHYKT+KPEKDGLFCERIFGPIKSGIC CGN
Sbjct: 1115 LVSEKNFQAWANKNLPNGEAVGEVTRPSTFHYKTDKPEKDGLFCERIFGPIKSGICGCGN 1174
Query: 914 YRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKP 735
R GAE ED +FC++CGVEFVDSRIRRYQMGYIKLACPVTHVWYLK LPSYIANLLDKP
Sbjct: 1175 SRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKP 1234
Query: 734 LKELEGLVYCDV*F 693
LK+LEGLVY D F
Sbjct: 1235 LKKLEGLVYGDFSF 1248
Score = 152 bits (385), Expect(2) = 1e-97
Identities = 75/88 (85%), Positives = 82/88 (93%)
Frame = -3
Query: 1444 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGATIIGEKVSNPEDAP 1265
RAKQGGQRVGEMEVWALEGFGVAHILQE+LTYKSDH+ ARQE+L ATI G+++ N ED P
Sbjct: 1035 RAKQGGQRVGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRIPNHEDPP 1094
Query: 1264 ESFRLLVRELRSLALELNHFLVSEKNFQ 1181
ESFR+LVRELRSLALELNHFLVSEKNFQ
Sbjct: 1095 ESFRVLVRELRSLALELNHFLVSEKNFQ 1122
>gb|AQM54407.1| RNA polymerase beta' subunit, partial (chloroplast) [Populus
ussuriensis]
Length = 152
Score = 305 bits (781), Expect = 3e-97
Identities = 143/152 (94%), Positives = 145/152 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI AW NKILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKE+PKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGEEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKP K+LEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPPKQLEGLVYCDV 152
>dbj|BAC77573.1| RNA polymerase beta' subunit, partial (chloroplast) [Nicotiana
tomentosiformis]
Length = 149
Score = 302 bits (774), Expect = 3e-96
Identities = 143/149 (95%), Positives = 143/149 (95%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MN NF SMIDRYKHQQLRIGLVS QQI AWA KILPNGEIVGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNNNFSSMIDRYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVY 708
THVWYLKRLPSYIANLLDKPLKELEGLVY
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVY 149
>ref|WP_042855006.1| hypothetical protein [Staphylococcus aureus]
Length = 152
Score = 302 bits (774), Expect = 3e-96
Identities = 142/152 (93%), Positives = 144/152 (94%)
Frame = -2
Query: 1154 MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEIVGEVTKPYTFHYKTNKPEKD 975
MNQNF SMIDRYKHQQLRIG VS QQI AWA KILPNGE VGEVTKPYTFHYKTNKPEKD
Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKPEKD 60
Query: 974 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 795
GLFCERIFGPIKSGICACGNYRVIG +KE PKFCEQCGVEFVDSRIRRYQMGYI+LACPV
Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPV 120
Query: 794 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
THVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 121 THVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152
>gb|KJB30917.1| hypothetical protein B456_005G1677001, partial [Gossypium raimondii]
Length = 370
Score = 310 bits (795), Expect = 4e-96
Identities = 152/172 (88%), Positives = 155/172 (90%)
Frame = -2
Query: 1214 ESFPCI*EELSD**EGSLI*MNQNFYSMIDRYKHQQLRIGLVSSQQIKAWANKILPNGEI 1035
ESF + EL EGSLI MNQNF SMIDRYKHQQLRIG VS QQI AWA KILPNGE
Sbjct: 200 ESFRLLVRELRSL-EGSLIGMNQNFSSMIDRYKHQQLRIGSVSPQQISAWAKKILPNGET 258
Query: 1034 VGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVE 855
VGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIG +KE PKFCEQCGVE
Sbjct: 259 VGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVE 318
Query: 854 FVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 699
FVDSRIRRYQMGYI+LACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 319 FVDSRIRRYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 370
Score = 133 bits (335), Expect = 3e-30
Identities = 66/73 (90%), Positives = 68/73 (93%)
Frame = -3
Query: 1444 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGATIIGEKVSNPEDAP 1265
R+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLG TIIG + PEDAP
Sbjct: 140 RSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAP 199
Query: 1264 ESFRLLVRELRSL 1226
ESFRLLVRELRSL
Sbjct: 200 ESFRLLVRELRSL 212