BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00036003
         (617 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   202   2e-56
gb|ABN15089.1| polyprotein, partial [Citrus yellow mosaic virus]      181   7e-54
gb|ABN15090.1| polyprotein, partial [Citrus yellow mosaic virus]      181   7e-54
gb|ABQ45368.1| polyprotein, partial [Citrus yellow mosaic virus]      180   8e-54
gb|ABQ45369.1| polyprotein, partial [Citrus yellow mosaic virus]      174   8e-52
gb|ABN15091.1| polyprotein, partial [Citrus yellow mosaic virus]      170   1e-50
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   184   6e-50
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               183   8e-50
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               183   1e-49
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   182   1e-49
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               182   2e-49
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               182   2e-49
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   182   2e-49
gb|ANG56360.1| protease, partial [Fig badnavirus 1]                   170   3e-48
gb|ANG56358.1| protease, partial [Fig badnavirus 1]                   169   6e-48
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   177   8e-48
gb|ANG56364.1| protease, partial [Fig badnavirus 1]                   169   9e-48
gb|ANG56363.1| protease, partial [Fig badnavirus 1]                   169   9e-48
gb|ANG56362.1| protease, partial [Fig badnavirus 1]                   169   9e-48
ref|YP_009229919.1| polyprotein [Blackberry Virus F] >gi|6892539...   177   1e-47

>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  202 bits (514), Expect = 2e-56
 Identities = 100/189 (52%), Positives = 138/189 (73%), Gaps = 1/189 (0%)
 Frame = +1

Query: 13   EDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKIS-QEQSIPIETGT 189
            EDL+ + +EL   D ++ K + K V   +  + E +N   EE ++K++ QE+  P     
Sbjct: 1003 EDLQKDYKELLSEDEEKRKRRAKGVMIIE--EGEQANFLQEEKVNKVAVQEEQRP----- 1055

Query: 190  KTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFT 369
               K+V+N+LYN I+ +DIPGI +F V+AILDTGATTCCIDQ S+P+  LE N+Y V+F+
Sbjct: 1056 --KKMVRNMLYNFIISIDIPGIDKFSVKAILDTGATTCCIDQESIPKEALEENTYLVRFS 1113

Query: 370  GINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEG 549
            G+NS    NKKLKGGRM+IG+N+FRIPYTYSF + + D +QMI+GCNFI++M GGVRIEG
Sbjct: 1114 GVNSTMTANKKLKGGRMFIGENMFRIPYTYSFPIKMEDGVQMIVGCNFIRAMYGGVRIEG 1173

Query: 550  TLVTFYKHL 576
             +VTFYK+L
Sbjct: 1174 NVVTFYKNL 1182


>gb|ABN15089.1| polyprotein, partial [Citrus yellow mosaic virus]
          Length = 226

 Score =  181 bits (458), Expect = 7e-54
 Identities = 82/133 (61%), Positives = 105/133 (78%)
 Frame = +1

Query: 178 ETGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYT 357
           +T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ 
Sbjct: 20  DTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFV 79

Query: 358 VQFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGV 537
           V F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGV
Sbjct: 80  VNFSGINSKQQVKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGV 139

Query: 538 RIEGTLVTFYKHL 576
           R+EG  +TFYK +
Sbjct: 140 RLEGNTITFYKQI 152


>gb|ABN15090.1| polyprotein, partial [Citrus yellow mosaic virus]
          Length = 226

 Score =  181 bits (458), Expect = 7e-54
 Identities = 82/133 (61%), Positives = 105/133 (78%)
 Frame = +1

Query: 178 ETGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYT 357
           +T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ 
Sbjct: 20  DTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFV 79

Query: 358 VQFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGV 537
           V F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGV
Sbjct: 80  VNFSGINSKQQVRQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGV 139

Query: 538 RIEGTLVTFYKHL 576
           R+EG  +TFYK +
Sbjct: 140 RLEGNTITFYKQI 152


>gb|ABQ45368.1| polyprotein, partial [Citrus yellow mosaic virus]
          Length = 207

 Score =  180 bits (456), Expect = 8e-54
 Identities = 82/132 (62%), Positives = 104/132 (78%)
 Frame = +1

Query: 181 TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
           T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1   TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 60

Query: 361 QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
            F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 61  NFSGINSKQQVKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 120

Query: 541 IEGTLVTFYKHL 576
           +EG  +TFYK +
Sbjct: 121 LEGNTITFYKQI 132


>gb|ABQ45369.1| polyprotein, partial [Citrus yellow mosaic virus]
          Length = 196

 Score =  174 bits (442), Expect = 8e-52
 Identities = 78/122 (63%), Positives = 99/122 (81%)
 Frame = +1

Query: 211 NLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFTGINSKQV 390
           N+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V F+GINSKQ 
Sbjct: 1   NMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQ 60

Query: 391 TNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEGTLVTFYK 570
             +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR+EG  +TFYK
Sbjct: 61  VKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGNTITFYK 120

Query: 571 HL 576
            +
Sbjct: 121 QI 122


>gb|ABN15091.1| polyprotein, partial [Citrus yellow mosaic virus]
          Length = 161

 Score =  170 bits (431), Expect = 1e-50
 Identities = 76/119 (63%), Positives = 96/119 (80%)
 Frame = +1

Query: 220 YNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFTGINSKQVTNK 399
           YNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V F+GINSKQ   +
Sbjct: 1   YNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQ 60

Query: 400 KLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEGTLVTFYKHL 576
           K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR+EG  +TFYK +
Sbjct: 61  KIKAGKMFISEHYFRIPYCYSFEMQIGDGIQLIVGCNFIRSMYGGVRLEGNTITFYKQI 119


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  184 bits (466), Expect = 6e-50
 Identities = 97/192 (50%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   I+       +
Sbjct: 635  RELQLQLEQSRKELAGTDARRRKDKGVVID----EGSCYFNP--EETTRIIAHG-----D 683

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 684  TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 743

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 744  NFSGINSKQQVKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 803

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 804  LEGNTITFYKQI 815


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  183 bits (465), Expect = 8e-50
 Identities = 97/192 (50%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   ++       +
Sbjct: 1111 RELQLQLEQSRKELAGADSRRRKDKGVVID----EGSCYFNP--EETTRIVAHG-----D 1159

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1160 TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1219

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1220 NFSGINSKQQVKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1279

Query: 541  IEGTLVTFYKHL 576
            +EG  VTFYK +
Sbjct: 1280 LEGNTVTFYKQI 1291


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  183 bits (464), Expect = 1e-49
 Identities = 96/192 (50%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   ++       +
Sbjct: 1112 RELQLQLEQSRKELAGTDARRRKDKGVVID----EGSCYFNP--EETTRIVAHG-----D 1160

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ V+N+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1161 TQVTKTRPVRNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1220

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +KLK G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1221 NFSGINSKQQVKQKLKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1280

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1281 LEGNTITFYKQI 1292


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  182 bits (463), Expect = 1e-49
 Identities = 98/192 (51%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   I+       +
Sbjct: 1127 RELQLQLEQSRKELAGVDSRRRKDKGIVID----EGSCYFNP--EETTRIIAHG-----D 1175

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1176 TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1235

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +KLK G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1236 NFSGINSKQQVKQKLKTGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1295

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1296 LEGNTITFYKQI 1307


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  182 bits (462), Expect = 2e-49
 Identities = 96/192 (50%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   ++       +
Sbjct: 1119 RELQLQLEQSRKELAGADSRRRKDKGVVID----EGSCYFNP--EETTRIVAHG-----D 1167

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1168 TQVTKTRPVKNMLYNMDVRIEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1227

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1228 NFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1287

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1288 LEGNTITFYKQI 1299


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  182 bits (462), Expect = 2e-49
 Identities = 96/192 (50%), Positives = 129/192 (67%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   ++       +
Sbjct: 1121 RELQLQLEQSRKELAGADSRRRKDKGVVID----EGSCYFNP--EETTRIVAHG-----D 1169

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1170 TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1229

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1230 NFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1289

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1290 LEGNTITFYKQI 1301


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  182 bits (462), Expect = 2e-49
 Identities = 98/192 (51%), Positives = 128/192 (66%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   I+       +
Sbjct: 1126 RELQLQLEQSRKELAGVDSRRRKDKGVVID----EGSCYFNP--EETTRIIAHG-----D 1174

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ VKN+LYNM V ++IPGIP F V+AILDTGATTCCID RSVP+  LE NS+ V
Sbjct: 1175 TQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVV 1234

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +KLK G+M+I ++ FRIPY YSF M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1235 NFSGINSKQQVKQKLKAGKMFINEHYFRIPYCYSFVMQIGDGIQLILGCNFIRSMYGGVR 1294

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1295 LEGNTITFYKQI 1306


>gb|ANG56360.1| protease, partial [Fig badnavirus 1]
          Length = 359

 Score =  170 bits (431), Expect = 3e-48
 Identities = 89/182 (48%), Positives = 119/182 (65%)
 Frame = +1

Query: 31  LQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIETGTKTTKLVK 210
           L E  L +    K  E+++D  K  +     I   E ++ + +++ I      +  K VK
Sbjct: 64  LYEALLMEKSLRKDYEELIDGDKERRKGIM-IQEPEEVNYLGEDEKILAAGTEEKKKFVK 122

Query: 211 NLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFTGINSKQV 390
           N+LYN  +E +IP + RF VRAILDTGA+TCCI++ +VP+  LE + Y VQ  G+NS Q 
Sbjct: 123 NMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQK 182

Query: 391 TNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEGTLVTFYK 570
           T KKLK GRM IG N FRIP+TYS  + +GD IQMI+GCNFI++M GGVRIEG  VTFYK
Sbjct: 183 TKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYK 242

Query: 571 HL 576
           +L
Sbjct: 243 NL 244


>gb|ANG56358.1| protease, partial [Fig badnavirus 1]
          Length = 359

 Score =  169 bits (429), Expect = 6e-48
 Identities = 89/182 (48%), Positives = 119/182 (65%)
 Frame = +1

Query: 31  LQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIETGTKTTKLVK 210
           L E  L +    K  E+++D  K  +     I   E ++ + +++ I      +  K VK
Sbjct: 64  LYEALLMEKSLRKDYEELIDGDKERRKGIM-IQEPEEVNYLGEDEKILAAGTEEKKKFVK 122

Query: 211 NLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFTGINSKQV 390
           N+LYN  +E +IP + RF VRAILDTGA+TCCI++ +VP+  LE + Y VQ  G+NS Q 
Sbjct: 123 NMLYNFDIESEIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQK 182

Query: 391 TNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEGTLVTFYK 570
           T KKLK GRM IG N FRIP+TYS  + +GD IQMI+GCNFI++M GGVRIEG  VTFYK
Sbjct: 183 TKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYK 242

Query: 571 HL 576
           +L
Sbjct: 243 NL 244


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  177 bits (450), Expect = 8e-48
 Identities = 93/192 (48%), Positives = 127/192 (66%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            ++L   LE   +EL   D ++ K K  ++D      + Y N   EET   ++       +
Sbjct: 1119 RELQLQLEQSRKELAGADSRRRKDKGVVID----EGSCYFNP--EETTRIVAHG-----D 1167

Query: 181  TGTKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTV 360
            T    T+ V+N+LYNM V ++IPGIP F V+ I DTGATTCCID RSVP+  LE NS+ V
Sbjct: 1168 TQVTKTRPVRNMLYNMDVRMEIPGIPAFTVKTIHDTGATTCCIDSRSVPKDALEENSFVV 1227

Query: 361  QFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVR 540
             F+GINSKQ   +K+K G+M+I ++ FRIPY YSF+M +GD IQ+I+GCNFI+SM GGVR
Sbjct: 1228 NFSGINSKQQVKQKIKSGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVR 1287

Query: 541  IEGTLVTFYKHL 576
            +EG  +TFYK +
Sbjct: 1288 LEGNTITFYKQI 1299


>gb|ANG56364.1| protease, partial [Fig badnavirus 1]
          Length = 359

 Score =  169 bits (428), Expect = 9e-48
 Identities = 88/190 (46%), Positives = 120/190 (63%)
 Frame = +1

Query: 7   LTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIETG 186
           + + L  + +EL   D ++ KG    +   +P +  Y           + +++ I     
Sbjct: 70  MEKSLRKDYEELKEGDKERRKG----IMIQEPEEVNY-----------LGEDEKILAAGT 114

Query: 187 TKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQF 366
            +  K VKN+LYN  +E +IP + RF VRAILDTGA+TCCI++ +VP+  LE + Y VQ 
Sbjct: 115 EEKKKFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQL 174

Query: 367 TGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIE 546
            G+NS Q T KKLK GRM IG N FRIP+TYS  + +GD IQMI+GCNFI++M GGVRIE
Sbjct: 175 NGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIE 234

Query: 547 GTLVTFYKHL 576
           G  VTFYK+L
Sbjct: 235 GNEVTFYKNL 244


>gb|ANG56363.1| protease, partial [Fig badnavirus 1]
          Length = 359

 Score =  169 bits (428), Expect = 9e-48
 Identities = 88/182 (48%), Positives = 119/182 (65%)
 Frame = +1

Query: 31  LQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIETGTKTTKLVK 210
           L E  L +    K  E++++  K  +     I   E ++ + +++ I      +  K VK
Sbjct: 64  LYEALLMETSLRKDYEELIEGDKERRKGIM-IQEPEEVNYLGEDEKILAAGTEEKKKFVK 122

Query: 211 NLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQFTGINSKQV 390
           N+LYN  +E +IP + RF VRAILDTGA+TCCI++ +VP+  LE + Y VQ  G+NS Q 
Sbjct: 123 NMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQK 182

Query: 391 TNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIEGTLVTFYK 570
           T KKLK GRM IG N FRIP+TYS  + +GD IQMI+GCNFI++M GGVRIEG  VTFYK
Sbjct: 183 TKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYK 242

Query: 571 HL 576
           +L
Sbjct: 243 NL 244


>gb|ANG56362.1| protease, partial [Fig badnavirus 1]
          Length = 359

 Score =  169 bits (428), Expect = 9e-48
 Identities = 88/190 (46%), Positives = 120/190 (63%)
 Frame = +1

Query: 7   LTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIETG 186
           + + L  + +EL   D ++ KG    +   +P +  Y           + +++ I     
Sbjct: 70  MEKSLRKDYEELKEGDKERRKG----IMIQEPEEVNY-----------LGEDEKILAAGT 114

Query: 187 TKTTKLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYTVQF 366
            +  K VKN+LYN  +E +IP + RF VRAILDTGA+TCCI++ +VP+  LE + Y VQ 
Sbjct: 115 EEKKKFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQL 174

Query: 367 TGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGVRIE 546
            G+NS Q T KKLK GRM IG N FRIP+TYS  + +GD IQMI+GCNFI++M GGVRIE
Sbjct: 175 NGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIE 234

Query: 547 GTLVTFYKHL 576
           G  VTFYK+L
Sbjct: 235 GNEVTFYKNL 244


>ref|YP_009229919.1| polyprotein [Blackberry Virus F]
 gb|AHX37579.1| polyprotein [Blackberry Virus F]
          Length = 1948

 Score =  177 bits (449), Expect = 1e-47
 Identities = 96/193 (49%), Positives = 128/193 (66%), Gaps = 1/193 (0%)
 Frame = +1

Query: 1    QKLTEDLEAELQELTLHDLQQAKGKEKIVDFAKPSQTEYSNIWLEETIHKISQEQSIPIE 180
            +KL EDLE    E    D  QAK + K V    PS + +     EET   I++E S+   
Sbjct: 1063 KKLIEDLEKGRMEAERFD--QAKERRKGVVIRTPSGSVHEASSDEETAMAITEETSLSST 1120

Query: 181  TGTKTT-KLVKNLLYNMIVELDIPGIPRFEVRAILDTGATTCCIDQRSVPEGGLEANSYT 357
            T   +  + V N LYNM+V ++IPG+  F VRAILDTGATTCC+D+ +VP   LE + Y 
Sbjct: 1121 TEAPSHGRKVINRLYNMVVNINIPGVKPFSVRAILDTGATTCCVDKGAVPAEALEKSPYA 1180

Query: 358  VQFTGINSKQVTNKKLKGGRMYIGDNVFRIPYTYSFQMNLGDEIQMIIGCNFIKSMQGGV 537
            V F+GINS+Q+   K K G+M IG+N FRIP+TYSF M + D I+M++GCNFI+SM GG+
Sbjct: 1181 VHFSGINSRQLAEYKFKQGQMEIGENRFRIPFTYSFPMGMKDGIEMLLGCNFIRSMYGGL 1240

Query: 538  RIEGTLVTFYKHL 576
            RIEG L+TFYK++
Sbjct: 1241 RIEGNLLTFYKNV 1253