BLASTX nr result
ID: Cheilocostus21_contig00032731
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00032731
(3069 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP63559.1| Retrovirus-related Pol polyprotein from transposo... 62 2e-10
ref|XP_020218720.1| uncharacterized protein LOC109801952 isoform... 62 2e-10
gb|KHN06274.1| Retrovirus-related Pol polyprotein from transposo... 67 1e-09
gb|KYP31410.1| Retrovirus-related Pol polyprotein from transposo... 71 2e-09
gb|KYP47918.1| Retrovirus-related Pol polyprotein from transposo... 64 3e-09
gb|KYP57147.1| Retrovirus-related Pol polyprotein from transposo... 64 4e-09
ref|XP_020246309.1| uncharacterized protein LOC109824187 [Aspara... 60 8e-09
gb|KYP33098.1| Retrovirus-related Pol polyprotein from transposo... 70 2e-08
gb|KYP74957.1| Retrovirus-related Pol polyprotein from transposo... 54 3e-08
gb|KYP78386.1| Retrovirus-related Pol polyprotein from transposo... 54 3e-08
gb|PRQ42978.1| putative RNA-directed DNA polymerase [Rosa chinen... 57 5e-08
gb|PRQ60115.1| putative RNA-directed DNA polymerase [Rosa chinen... 57 5e-08
gb|KYP74868.1| Retrovirus-related Pol polyprotein from transposo... 69 5e-08
gb|KYP76234.1| Retrovirus-related Pol polyprotein from transposo... 59 1e-07
gb|PRQ52323.1| putative RNA-directed DNA polymerase [Rosa chinen... 54 3e-07
gb|PNX92788.1| retrovirus-related Pol polyprotein from transposo... 54 3e-07
gb|KYP34595.1| Retrovirus-related Pol polyprotein from transposo... 66 4e-07
gb|PRQ53465.1| putative RNA-directed DNA polymerase [Rosa chinen... 54 5e-07
gb|PNX74724.1| gag-pol polyprotein, partial [Trifolium pratense] 57 5e-07
gb|KYP44825.1| Retrovirus-related Pol polyprotein from transposo... 54 6e-07
>gb|KYP63559.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1378
Score = 61.6 bits (148), Expect(2) = 2e-10
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIII-SKCNFSLEVIYSNIW-- 1025
+LGHP LT +K+ + SL+ + + C++ L +H FP ++CN + +I+S+IW
Sbjct: 453 RLGHPHLTKLKKMVPSLNKLQALECESCQLGKHVRSSFPKRTETRCNSAFSIIHSDIWGP 512
Query: 1024 ----SLNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEI 860
S R F+ F+D + + TWIY++K+ + + +F F +EI N F IKVL ++
Sbjct: 513 SRVTSFGFRYFVTFIDEY-SRCTWIYLMKDRSELLSIFMSFCNEIKNQFGKIIKVLRSDN 571
Query: 859 QKSMF 845
K F
Sbjct: 572 AKEYF 576
Score = 35.4 bits (80), Expect(2) = 2e-10
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY S L SF T+ I+ Q+T P T Q NG+A K
Sbjct: 571 NAKEYFSSDLTSFLTTYGILHQSTCPHTPQQNGIAERK 608
>ref|XP_020218720.1| uncharacterized protein LOC109801952 isoform X2 [Cajanus cajan]
Length = 839
Score = 61.6 bits (148), Expect(2) = 2e-10
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIII-SKCNFSLEVIYSNIW-- 1025
+LGHP LT +K+ + SL+ + + C++ L +H FP ++CN + +I+S+IW
Sbjct: 447 RLGHPHLTKLKKMVPSLNKLQALECESCQLGKHVRSSFPKRTETRCNSAFSIIHSDIWGP 506
Query: 1024 ----SLNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEI 860
S R F+ F+D + + TWIY++K+ + + +F F +EI N F IKVL ++
Sbjct: 507 SRVTSFGFRYFVTFIDEY-SRCTWIYLMKDRSELLSIFMSFCNEIKNQFGKIIKVLRSDN 565
Query: 859 QKSMF 845
K F
Sbjct: 566 AKEYF 570
Score = 35.4 bits (80), Expect(2) = 2e-10
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY S L SF T+ I+ Q+T P T Q NG+A K
Sbjct: 565 NAKEYFSSDLTSFLTTYGILHQSTCPHTPQQNGIAERK 602
>gb|KHN06274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1353
Score = 67.0 bits (162), Expect(2) = 1e-09
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYSNIW--- 1025
+LGHP L +K + SL ++ C+ L +H FP + +CN + +I+S+IW
Sbjct: 435 RLGHPSLPKLKMMIPSLKNLRVLECEPCQLGKHVRSSFPKTVQRCNSAFSIIHSDIWGPS 494
Query: 1024 ---SLNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEIQ 857
S R F+ F+D F + TW+Y++K+ + + +F F +EI N F T+I+V ++
Sbjct: 495 RVSSFGFRYFVTFIDEF-SRCTWVYLMKDRSELLPIFMSFLNEIENQFKTTIQVFRSDNA 553
Query: 856 KSMFGH 839
K F H
Sbjct: 554 KEYFSH 559
Score = 27.3 bits (59), Expect(2) = 1e-09
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY S + I+ Q+T P T Q NG+A K
Sbjct: 552 NAKEYFSHDFSSLLSSKGILHQSTCPHTPQQNGIAERK 589
>gb|KYP31410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 299
Score = 70.9 bits (172), Expect = 2e-09
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQ-----FLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIY 1037
W+ ++GHP +KQ F +D + TCD +++ +VPFP ++K N +I+
Sbjct: 134 WHERMGHPSFYYMKQALPKLFAGVD-LSKLTCDTCIVAKSPHVPFPTHLNKINTPFGLIH 192
Query: 1036 SNIW---SLNSRV----FLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIK 878
+++W SL+S V F+ T VTW+Y LK+ V D+FK F S I FD SI
Sbjct: 193 TDVWGPSSLSSLVGHQWFVTCIDDCTLVTWLYFLKHINEVFDIFKTFHSTIRTQFDFSIC 252
Query: 877 VL*TEIQKSMFGHLSLAFVKHIVLFFKPLTLLPLNRMELHN 755
+L + + F+ + L+ +PL L LNR L N
Sbjct: 253 ILRLDNGGEYVNNQFRHFLIPMGLYMRPLVLTHLNRTVLPN 293
>gb|KYP47918.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 685
Score = 63.9 bits (154), Expect(2) = 3e-09
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Frame = -3
Query: 1201 WNFQLGHP-FLTLIKQFLSLD---SILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP F L K F SL +I F C+ +++ H FP+ K F +I++
Sbjct: 371 WHRRLGHPSFGYLKKLFPSLFHKCNISDFLCETCVMAKSHRAVFPLSNKKTVFPFSLIHT 430
Query: 1033 NIWSL-------NSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W + F+ T VTW+Y+LK+ + VCDVF+ F IV F+T IKV
Sbjct: 431 DVWGPAPQSTHNGKKWFISFVDDCTRVTWVYLLKHKSDVCDVFRSFHHMIVTQFNTYIKV 490
Query: 874 L*TEIQKSMF 845
+ ++ + F
Sbjct: 491 IRSDNGREYF 500
Score = 29.3 bits (64), Expect(2) = 3e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N +EY + L F + I+ QTT P + Q NGVA K
Sbjct: 495 NGREYFKTELIEFMNSKGILHQTTCPYSPQQNGVAERK 532
>gb|KYP57147.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 752
Score = 63.5 bits (153), Expect(2) = 4e-09
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Frame = -3
Query: 1201 WNFQLGHP-FLTLIKQFLSLD---SILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP F L K F SL +I F C+ +++ H FP+ K F +I++
Sbjct: 438 WHRRLGHPSFGYLKKLFPSLFHKCNISDFLCETCVMAKSHRAVFPLSNKKTVFPFSLIHT 497
Query: 1033 NIWSL-------NSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W + F+ T VTW+Y+LK+ + VCDVF+ F IV F+T IKV
Sbjct: 498 DVWGPAPQSTHNGKKWFISFVDDCTRVTWVYMLKHKSDVCDVFRSFHHMIVTQFNTYIKV 557
Query: 874 L*TEIQKSMF 845
+ ++ + F
Sbjct: 558 IRSDNGREYF 567
Score = 29.3 bits (64), Expect(2) = 4e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N +EY + L F + I+ QTT P + Q NGVA K
Sbjct: 562 NGREYFKTELIEFMNSKGILHQTTCPYSPQQNGVAERK 599
>ref|XP_020246309.1| uncharacterized protein LOC109824187 [Asparagus officinalis]
Length = 697
Score = 60.1 bits (144), Expect(2) = 8e-09
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQFLSLD-SILSFTCDAR*LSEHHYVPFPIIISKCN-FSLEVIYSNI 1028
W +LGH L ++ +S+ SI S C++ L +HH F + KC+ F+ E+++S++
Sbjct: 358 WFRRLGHHSLQKLRSVVSVQPSISSLGCESCELGKHHRATFQSRVDKCSSFAFELVHSDV 417
Query: 1027 WS-------LNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL 872
W R F+ F+D F + +TW+Y+LK + V V + F +EI F TSI +L
Sbjct: 418 WGPYRVPSVQGYRYFIIFVDDF-SRMTWLYLLKERSEVSRVIEYFYNEIKTQFSTSICIL 476
Query: 871 *TE 863
T+
Sbjct: 477 RTD 479
Score = 31.6 bits (70), Expect(2) = 8e-09
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EY+ S + FC + II QT+ TSQ NGVA K
Sbjct: 480 NDLEYMKSDVSKFCALNGIIHQTSCSHTSQQNGVAERK 517
>gb|KYP33098.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 779
Score = 70.1 bits (170), Expect = 2e-08
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 11/121 (9%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQ-FLSLDS---ILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LG+P + +K+ FLSL + I F C+ +++ H V FPI S+ N +++S
Sbjct: 323 WHKRLGNPSFSYVKRLFLSLFTCCNISDFKCETCVMAKSHRVIFPINNSRANAPFSIVHS 382
Query: 1033 NIWSL-------NSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W R F+ T +TW+Y+LK+ + VCD+F++F I FDT IK+
Sbjct: 383 DVWGPAPIPTHNGMRWFVTFVDDCTRMTWLYLLKHKSDVCDIFQVFHKMITTQFDTQIKI 442
Query: 874 L 872
+
Sbjct: 443 I 443
>gb|KYP74957.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1122
Score = 54.3 bits (129), Expect(3) = 3e-08
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIIISK-CNFSLEVIYSNIW-- 1025
+LGHP L+ +K + SL + C++ L +H FP K CN I+S+IW
Sbjct: 773 RLGHPCLSKLKLLVPSLQKLAELGCESCQLGKHVRSSFPKQTDKRCNSIFTTIHSDIWGP 832
Query: 1024 ----SLNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEI 860
S R F+ F+D F + TW+Y++K+ + + +F F +EI N F IK+ ++
Sbjct: 833 SRVTSFGFRYFVTFIDEF-SRCTWVYLMKDRSELLSIFMSFFNEIKNQFGRLIKIFRSDN 891
Query: 859 QKSMF 845
K F
Sbjct: 892 AKEYF 896
Score = 33.1 bits (74), Expect(3) = 3e-08
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY S L SF + ++ Q+T P T Q NG+A K
Sbjct: 891 NAKEYFSSELSSFLSSQGVLHQSTCPHTPQQNGIAERK 928
Score = 21.6 bits (44), Expect(3) = 3e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 1284 GHENDGVYYSLDQP 1243
GHE+ G+YY QP
Sbjct: 744 GHESGGLYYFEMQP 757
>gb|KYP78386.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 610
Score = 53.5 bits (127), Expect(3) = 3e-08
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIIISK-CNFSLEVIYSNIWSL 1019
+LGHP L+ +K + SL ++ C++ L +H FP K CN I+S+IW
Sbjct: 211 RLGHPSLSKLKLLVPSLKNLEELGCESCQLGKHVRSSFPKQTDKRCNSIFTTIHSDIWG- 269
Query: 1018 NSRV---FLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEIQKSM 848
SRV F+D F + TW+Y++K+ + + +F F +EI N F IK+ ++ K
Sbjct: 270 PSRVTSFITFIDEF-SRCTWVYLMKDRSELLSIFMSFFNEIKNQFGRIIKIFRSDNAKEY 328
Query: 847 F 845
F
Sbjct: 329 F 329
Score = 32.7 bits (73), Expect(3) = 3e-08
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY S L SF + ++ Q+ P TSQ NG+A K
Sbjct: 324 NAKEYFSSELSSFLSSQGVLHQSKCPHTSQQNGIAKRK 361
Score = 22.7 bits (47), Expect(3) = 3e-08
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 1284 GHENDGVYYSLDQP 1243
GHE+ G+YY QP
Sbjct: 182 GHESSGLYYFETQP 195
>gb|PRQ42978.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1051
Score = 56.6 bits (135), Expect(2) = 5e-08
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Frame = -3
Query: 1201 WNFQLGHPFL----TLIKQFLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP TL + +F CD L + H V +P+ +K ++++S
Sbjct: 202 WHKRLGHPSFGYLQTLFPLLFQHNKPSAFKCDTCILGKSHRVSYPLSSTKSIAPFDLVHS 261
Query: 1033 NIW-------SLNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W S LF+D T ++WIY+LKN + V VF+ F + I F T IKV
Sbjct: 262 DVWGPCPPTPSGMKWFVLFVD-DCTRMSWIYLLKNKSDVFPVFQTFHAMIRTQFQTPIKV 320
Query: 874 L*TEIQKSMFGHL 836
L ++ HL
Sbjct: 321 LRSDNGGEYVNHL 333
Score = 32.3 bits (72), Expect(2) = 5e-08
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EYV + TH II QTT P T Q NGVA K
Sbjct: 325 NGGEYVNHLFHQYLATHGIIHQTTCPQTPQQNGVAERK 362
>gb|PRQ60115.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1014
Score = 56.6 bits (135), Expect(2) = 5e-08
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Frame = -3
Query: 1201 WNFQLGHPFL----TLIKQFLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP TL + +F CD L + H V +P+ +K ++++S
Sbjct: 31 WHKRLGHPSFGYLQTLFPLLFQHNKPSAFKCDTCILGKSHRVSYPLSSTKSIAPFDLVHS 90
Query: 1033 NIW-------SLNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W S LF+D T ++WIY+LKN + V VF+ F + I F T IKV
Sbjct: 91 DVWGPCPPTPSGMKWFVLFVD-DCTRMSWIYLLKNKSDVFPVFQTFHAMIRTQFQTPIKV 149
Query: 874 L*TEIQKSMFGHL 836
L ++ HL
Sbjct: 150 LRSDNGGEYVNHL 162
Score = 32.3 bits (72), Expect(2) = 5e-08
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EYV + TH II QTT P T Q NGVA K
Sbjct: 154 NGGEYVNHLFHQYLATHGIIHQTTCPQTPQQNGVAERK 191
>gb|KYP74868.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 793
Score = 68.9 bits (167), Expect = 5e-08
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQFL----SLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP + IK+ + +I F C+ +++ H FPI S+ N +++S
Sbjct: 355 WHKRLGHPSFSYIKRLFPSLFTCCNIFYFKCETCVMAKSHRAIFPINNSRANAPFSIVHS 414
Query: 1033 NIWSL-------NSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W R F+ T +TW+Y+LK+ + VCDVF++F I FDT IK+
Sbjct: 415 DVWGPAPIPTHNGMRWFVTFVDDCTRMTWLYLLKHKSDVCDVFQVFHKIITTQFDTEIKI 474
Query: 874 L 872
+
Sbjct: 475 I 475
>gb|KYP76234.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 345
Score = 58.9 bits (141), Expect(2) = 1e-07
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Frame = -3
Query: 1201 WNFQLGHPFL-----TLIKQFLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIY 1037
W+ +GHP L K F +D + TCD +++ H VPFP ++K N +I+
Sbjct: 125 WHACMGHPSFYYMKHVLPKLFAGVD-LSKLTCDTCIVAKSHRVPFPTHLNKINTPFGLIH 183
Query: 1036 SNIWSLNSRVFL--------FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSI 881
+++W +S L F+D + VTW+Y LK+ + V +FK F S I F+T I
Sbjct: 184 TDVWGPSSLPSLVGHWWFVTFIDDCMR-VTWLYFLKHKSEVFYIFKTFHSMIRTQFNTYI 242
Query: 880 KVL 872
+VL
Sbjct: 243 RVL 245
Score = 28.9 bits (63), Expect(2) = 1e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA 759
N EYV + F TH II + + P+T Q NGVA
Sbjct: 249 NGGEYVNNQFQHFFNTHRIIHEISCPNTPQQNGVA 283
>gb|PRQ52323.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1014
Score = 53.5 bits (127), Expect(2) = 3e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Frame = -3
Query: 1201 WNFQLGHPFL----TLIKQFLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP TL + F C+ L + H V FP+ +K ++++S
Sbjct: 31 WHKRLGHPSFGYLQTLFPLLFQHNRPSDFKCNTCILGKSHRVTFPLSSNKSISPFDLVHS 90
Query: 1033 NIW-------SLNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W S LF+D T ++WIY+L+N + V VF+ F + I F T IKV
Sbjct: 91 DVWGPCPATPSGMKWFVLFVD-DCTRMSWIYLLRNKSDVFPVFQTFHAMIQTQFQTPIKV 149
Query: 874 L 872
L
Sbjct: 150 L 150
Score = 32.7 bits (73), Expect(2) = 3e-07
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EYV + TH II QTT P T Q NGVA K
Sbjct: 154 NGGEYVNHPFHQYLATHGIIHQTTCPQTPQQNGVAERK 191
>gb|PNX92788.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1503
Score = 53.9 bits (128), Expect(3) = 3e-07
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQ-----FLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIY 1037
W+ +LGH +K+ F+++D + SF CD L++ H FP+I++K VI+
Sbjct: 504 WHRRLGHASFGYLKKLFPSLFVTVD-VSSFQCDVCELAKSHRASFPLILNKSPIPFMVIH 562
Query: 1036 SNIWSLN-------SRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIK 878
S++W + SR F+ T +TW+ ++K+ + V +FK F I ++ ++
Sbjct: 563 SDVWGPSKVSSLGGSRWFVTFIDDCTRMTWVCLMKSKSEVSFLFKKFYKMICTQYNAQVQ 622
Query: 877 VL 872
VL
Sbjct: 623 VL 624
Score = 30.4 bits (67), Expect(3) = 3e-07
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EY+ S + +TH I+ QTT T Q NGVA K
Sbjct: 628 NGGEYLSSEFQQYLETHGIVHQTTCSYTPQQNGVAERK 665
Score = 20.8 bits (42), Expect(3) = 3e-07
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 1322 VFQDLKMKATIGGGMR 1275
VF+D++ + TIG G R
Sbjct: 451 VFKDIQTRKTIGCGTR 466
>gb|KYP34595.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 758
Score = 65.9 bits (159), Expect = 4e-07
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL----SLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYSNIW 1025
+LGHP LIK + +S+ SF CD LS+HH +PI K E+I+SN+W
Sbjct: 132 RLGHPSFNLIKSLFPHLFTKESVESFNCDICQLSKHHRASYPISSKKSISPFELIHSNVW 191
Query: 1024 S------LNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TE 863
++ F+ T VTW Y++KN + V +F F + N F +IK + ++
Sbjct: 192 GPVVEFISGAKCFVTFIDDCTRVTWTYLMKNKSEVFQIFVKFFHLVQNQFGKNIKRIRSD 251
Query: 862 IQKSMFGHLSLAFVKH 815
H L F+ H
Sbjct: 252 NGTEYVNHEFLNFLSH 267
>gb|PRQ53465.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1350
Score = 53.9 bits (128), Expect(2) = 5e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Frame = -3
Query: 1201 WNFQLGHPFL----TLIKQFLSLDSILSFTCDAR*LSEHHYVPFPIIISKCNFSLEVIYS 1034
W+ +LGHP TL + F C+ L + H V FP+ +K ++++S
Sbjct: 377 WHKRLGHPSFGYLQTLFPLLFQHNKPSDFKCNTCILGKSHRVTFPLSSNKSISPFDLVHS 436
Query: 1033 NIW-------SLNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKV 875
++W S LF+D T ++WIY+L+N + V VF+ F + I F T IKV
Sbjct: 437 DVWGPCPATPSGMKWFVLFVD-DCTRMSWIYLLRNKSDVFPVFQTFHAMIQTQFQTPIKV 495
Query: 874 L 872
L
Sbjct: 496 L 496
Score = 31.6 bits (70), Expect(2) = 5e-07
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -2
Query: 854 EYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
EYV + TH I+ QTT P T Q NGVA K
Sbjct: 503 EYVNHPFHQYLATHGIVHQTTCPQTPQQNGVAERK 537
>gb|PNX74724.1| gag-pol polyprotein, partial [Trifolium pratense]
Length = 800
Score = 57.0 bits (136), Expect(2) = 5e-07
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Frame = -3
Query: 1201 WNFQLGHPFLTLIKQFL-----SLDSILSFTCDAR*LSEHHYVPFPIIISKCNFS--LEV 1043
W+ +LGHP +K L LD +F CD L++ H VPF + ++K +
Sbjct: 196 WHCRLGHPSFDYMKHLLPKLFSGLDQS-TFKCDTCILAKSHRVPFSVNLNKSPLGHPFAL 254
Query: 1042 IYSNIW--------SLNSRVFLFLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDT 887
+++++W S N F+D T +TW+Y LK+ V DVF+ F + I F T
Sbjct: 255 VHTDVWGPSPITIASSNRWFVTFID-DCTRMTWLYFLKHKNEVFDVFRAFHTMIRTQFST 313
Query: 886 SIKVL 872
++KVL
Sbjct: 314 NVKVL 318
Score = 28.5 bits (62), Expect(2) = 5e-07
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N EYV ++ Q H ++ +T+ P T Q NGVA K
Sbjct: 322 NGGEYVNKQFQAYFQDHGLVHETSCPHTPQQNGVAERK 359
>gb|KYP44825.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1371
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Frame = -3
Query: 1192 QLGHPFLTLIKQFL-SLDSILSFTCDAR*LSEHHYVPFPIIISK-CNFSLEVIYSNIW-- 1025
+LGHP L+ +K + SL ++ C++ L +H FP K CN I+S+IW
Sbjct: 447 RLGHPSLSKLKLLVPSLKTLEELGCESCQLGKHVRSSFPKQTEKRCNSVFTTIHSDIWGP 506
Query: 1024 ----SLNSRVFL-FLD*FLTPVTWIYILKN*ASVCDVFKIFPSEIVN*FDTSIKVL*TEI 860
S R F+ F+D F + TW+Y++K+ + + +F F +EI N F +IK+ ++
Sbjct: 507 SRVTSFGFRYFVTFIDEF-SRCTWVYLMKDRSELLSIFVSFFNEIQNQFGKTIKIFRSDN 565
Query: 859 QKSMF 845
K F
Sbjct: 566 AKEYF 570
Score = 30.8 bits (68), Expect(2) = 6e-07
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 863 NTKEYVWSSLFSFCQTHCIILQTTYPSTSQ*NGVA*HK 750
N KEY L SF + ++ Q+T P T Q NG+A K
Sbjct: 565 NAKEYFSLELSSFLSSQGVLHQSTCPHTPQQNGIAERK 602