BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00031042
         (1315 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009395180.1| PREDICTED: nonsense-mediated mRNA decay prot...   138   7e-34
ref|XP_009395179.1| PREDICTED: RNA polymerase II subunit 5-media...   138   4e-33
ref|XP_009395177.1| PREDICTED: RNA polymerase II subunit 5-media...   138   6e-33

>ref|XP_009395180.1| PREDICTED: nonsense-mediated mRNA decay protein 2 isoform X3 [Musa
           acuminata subsp. malaccensis]
          Length = 290

 Score =  138 bits (347), Expect = 7e-34
 Identities = 98/222 (44%), Positives = 118/222 (53%), Gaps = 17/222 (7%)
 Frame = +1

Query: 1   NLQKLDEDAEYARIMARIXXXXXXXXXXXGSNSDEKSE------------GNEYLVAANE 144
           ++Q  DED EYARIMAR+            ++ D+  E            G+E   A + 
Sbjct: 70  DMQMPDEDEEYARIMARLDELEKEELEDGSTSDDDNEENLAGDEVEDDETGDEDEDAESS 129

Query: 145 FVXXXXXXXXXXXQVKHKSTDPIQKVKGS--EMSSSIVYKQMPSILEQHLIDQPFT-DSK 315
                        ++KHKS  P+QK +G   EM  SIV KQ+  I EQ L DQPF+ DSK
Sbjct: 130 SSFSTSDLKHEILEIKHKSEHPVQKARGQGQEMLGSIVSKQIGGITEQPLTDQPFSGDSK 189

Query: 316 IQFPTESRSPSNKGLSVSKEFA-SSPYDAKLSISYIEDSSGSAN-QTSHLVSSDRKAFTG 489
           +QFP  + S SN G S+SKE + SS  DAK S S IEDSS S + Q S  VSS  KAFTG
Sbjct: 190 MQFPAVAHSFSNSGQSISKEVSRSSSSDAKFSFSKIEDSSNSTSRQISDRVSSGHKAFTG 249

Query: 490 SIIEHDLGLLPIXXXXXXXXXXXXXXXXXXPVSRFKMHRGNR 615
           SIIEHDLGL PI                  PVSRFKM +GNR
Sbjct: 250 SIIEHDLGLPPI-QSAKSNLGQASVSSSSKPVSRFKMQKGNR 290


>ref|XP_009395179.1| PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X2 [Musa acuminata subsp. malaccensis]
          Length = 374

 Score =  138 bits (347), Expect = 4e-33
 Identities = 98/222 (44%), Positives = 118/222 (53%), Gaps = 17/222 (7%)
 Frame = +1

Query: 1   NLQKLDEDAEYARIMARIXXXXXXXXXXXGSNSDEKSE------------GNEYLVAANE 144
           ++Q  DED EYARIMAR+            ++ D+  E            G+E   A + 
Sbjct: 154 DMQMPDEDEEYARIMARLDELEKEELEDGSTSDDDNEENLAGDEVEDDETGDEDEDAESS 213

Query: 145 FVXXXXXXXXXXXQVKHKSTDPIQKVKGS--EMSSSIVYKQMPSILEQHLIDQPFT-DSK 315
                        ++KHKS  P+QK +G   EM  SIV KQ+  I EQ L DQPF+ DSK
Sbjct: 214 SSFSTSDLKHEILEIKHKSEHPVQKARGQGQEMLGSIVSKQIGGITEQPLTDQPFSGDSK 273

Query: 316 IQFPTESRSPSNKGLSVSKEFA-SSPYDAKLSISYIEDSSGSAN-QTSHLVSSDRKAFTG 489
           +QFP  + S SN G S+SKE + SS  DAK S S IEDSS S + Q S  VSS  KAFTG
Sbjct: 274 MQFPAVAHSFSNSGQSISKEVSRSSSSDAKFSFSKIEDSSNSTSRQISDRVSSGHKAFTG 333

Query: 490 SIIEHDLGLLPIXXXXXXXXXXXXXXXXXXPVSRFKMHRGNR 615
           SIIEHDLGL PI                  PVSRFKM +GNR
Sbjct: 334 SIIEHDLGLPPI-QSAKSNLGQASVSSSSKPVSRFKMQKGNR 374


>ref|XP_009395177.1| PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X1 [Musa acuminata subsp. malaccensis]
 ref|XP_009395178.1| PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 394

 Score =  138 bits (347), Expect = 6e-33
 Identities = 98/222 (44%), Positives = 118/222 (53%), Gaps = 17/222 (7%)
 Frame = +1

Query: 1   NLQKLDEDAEYARIMARIXXXXXXXXXXXGSNSDEKSE------------GNEYLVAANE 144
           ++Q  DED EYARIMAR+            ++ D+  E            G+E   A + 
Sbjct: 174 DMQMPDEDEEYARIMARLDELEKEELEDGSTSDDDNEENLAGDEVEDDETGDEDEDAESS 233

Query: 145 FVXXXXXXXXXXXQVKHKSTDPIQKVKGS--EMSSSIVYKQMPSILEQHLIDQPFT-DSK 315
                        ++KHKS  P+QK +G   EM  SIV KQ+  I EQ L DQPF+ DSK
Sbjct: 234 SSFSTSDLKHEILEIKHKSEHPVQKARGQGQEMLGSIVSKQIGGITEQPLTDQPFSGDSK 293

Query: 316 IQFPTESRSPSNKGLSVSKEFA-SSPYDAKLSISYIEDSSGSAN-QTSHLVSSDRKAFTG 489
           +QFP  + S SN G S+SKE + SS  DAK S S IEDSS S + Q S  VSS  KAFTG
Sbjct: 294 MQFPAVAHSFSNSGQSISKEVSRSSSSDAKFSFSKIEDSSNSTSRQISDRVSSGHKAFTG 353

Query: 490 SIIEHDLGLLPIXXXXXXXXXXXXXXXXXXPVSRFKMHRGNR 615
           SIIEHDLGL PI                  PVSRFKM +GNR
Sbjct: 354 SIIEHDLGLPPI-QSAKSNLGQASVSSSSKPVSRFKMQKGNR 394