BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00029316
         (2505 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKA45798.1| polyprotein [Taro bacilliform CH virus]                429   e-127
ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus] >gi|...   425   e-125
gb|ASG91840.1| polyprotein [Cacao swollen shoot virus]                417   e-122
gb|ATZ69463.1| ORF3 polyprotein [Cacao swollen shoot CE virus]        415   e-122
gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]                414   e-121
gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]   414   e-121
gb|ATZ69459.1| ORF3 polyprotein [Cacao swollen shoot CE virus]        413   e-121
gb|ATZ69454.1| ORF3 polyprotein [Cacao swollen shoot CD virus]        413   e-121
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               412   e-121
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               411   e-120
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           411   e-120
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] >gi|347...   410   e-120
gb|ASG91859.1| polyprotein [Cacao swollen shoot virus]                408   e-120
gb|ASG91880.1| polyprotein [Cacao swollen shoot virus]                410   e-120
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   410   e-120
gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]                410   e-120
gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]                410   e-120
gb|ASG91844.1| polyprotein [Cacao swollen shoot virus]                410   e-120
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               410   e-120
gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]                409   e-120

>gb|AKA45798.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  429 bits (1104), Expect = e-127
 Identities = 219/333 (65%), Positives = 267/333 (80%), Gaps = 6/333 (1%)
 Frame = +1

Query: 1351 TTRTIMEQPSTS--APLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH--TLEH 1518
            TT    +QPSTS   PLFEDQ+R YR+ QRRL+N +Q V RL RRIT G S +H  TLE 
Sbjct: 7    TTARTQDQPSTSRTTPLFEDQIRNYRQRQRRLNNARQVVGRLQRRIT-GRSQLHNQTLEQ 65

Query: 1519 QIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*E 1698
            QIDPQ QLR SMQERA+I+PAEV+YHSRRDD HHRVY+HRSEEALL T+  Q D+ FI E
Sbjct: 66   QIDPQVQLRNSMQERAAIIPAEVMYHSRRDDEHHRVYVHRSEEALLCTDNQQQDRIFIQE 125

Query: 1699 QSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQ 1878
            +SF QLQRS+MQ+IH+G++ +RIQ LHR +EGT+AL+VFRDNRW  D+++ A++EV+L+Q
Sbjct: 126  ESFKQLQRSRMQFIHIGVIQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQ 185

Query: 1879 GSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFA 2058
            GSQLVYVIP+ M+TIGDFY N+QVSILTRGYE W  GEANLLI  GLVGRLSNTPNVGFA
Sbjct: 186  GSQLVYVIPNTMMTIGDFYNNVQVSILTRGYEAW-RGEANLLITRGLVGRLSNTPNVGFA 244

Query: 2059 YEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNILIQPTEVNSRNLMDGRVS 2238
            YEVQ VVDYL SHGV A+PGRR + Q LQ  NW++RPTQ +I  QPTEV++R  +DG +S
Sbjct: 245  YEVQSVVDYLVSHGVRAIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTIS 304

Query: 2239 LSFHDYTTA--TSLKPPKYNSNDEEIQSDEEEV 2331
            L F +YT+A  ++ +   YN  DEEIQSDEE++
Sbjct: 305  LRFGNYTSARTSTTRRIAYNLRDEEIQSDEEQI 337



 Score = 85.5 bits (210), Expect = 4e-13
 Identities = 40/64 (62%), Positives = 52/64 (81%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           IQ+RIQ LHR +E T+AL+VF DN    D+++ A+MEVDL+Q SQLVYVIP+ M+TIGDF
Sbjct: 144 IQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIGDF 203

Query: 263 YRNM 274
           Y N+
Sbjct: 204 YNNV 207


>ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus]
 gb|AKA45804.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  425 bits (1093), Expect = e-125
 Identities = 219/333 (65%), Positives = 264/333 (79%), Gaps = 6/333 (1%)
 Frame = +1

Query: 1351 TTRTIMEQPSTS--APLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH--TLEH 1518
            TT     QPSTS   PLFEDQ+R YR+ +RRLHN +Q V RL RRIT G S +H  TLE 
Sbjct: 7    TTARTQVQPSTSRTTPLFEDQIRNYRQRERRLHNARQVVGRLHRRIT-GRSQLHNQTLEQ 65

Query: 1519 QIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*E 1698
            QIDPQ  LR SMQERA+IVPAEVLYHSR DD HHRVY+HRSEEALL T+  Q D+ FI E
Sbjct: 66   QIDPQVHLRNSMQERAAIVPAEVLYHSRCDDEHHRVYVHRSEEALLCTDNQQQDRIFIQE 125

Query: 1699 QSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQ 1878
            +SF QLQRS+MQ+IH+G++ +RIQ LHR +EGT+AL+VFRDNRW  D+++ A++EV+L+Q
Sbjct: 126  ESFKQLQRSRMQFIHIGVIQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQ 185

Query: 1879 GSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFA 2058
            GSQLVYVIP+ M+TIGDFY N+QVSILTRGYE W  GEANLLI  GLVGRLSNTPNVGFA
Sbjct: 186  GSQLVYVIPNTMMTIGDFYNNVQVSILTRGYEAW-RGEANLLITRGLVGRLSNTPNVGFA 244

Query: 2059 YEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNILIQPTEVNSRNLMDGRVS 2238
            YEVQ VVDYL SHGV A+PGRR + Q LQ  NW++RPTQ +I  QPTEV++R  +DG +S
Sbjct: 245  YEVQSVVDYLVSHGVQAIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTIS 304

Query: 2239 LSFHDYTTA--TSLKPPKYNSNDEEIQSDEEEV 2331
            L F +YT+A  ++ +   YN  DEEIQSDEE++
Sbjct: 305  LRFGNYTSARTSTTRRIAYNLRDEEIQSDEEQI 337



 Score = 85.5 bits (210), Expect = 4e-13
 Identities = 40/64 (62%), Positives = 52/64 (81%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           IQ+RIQ LHR +E T+AL+VF DN    D+++ A+MEVDL+Q SQLVYVIP+ M+TIGDF
Sbjct: 144 IQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIGDF 203

Query: 263 YRNM 274
           Y N+
Sbjct: 204 YNNV 207


>gb|ASG91840.1| polyprotein [Cacao swollen shoot virus]
          Length = 1879

 Score =  417 bits (1072), Expect = e-122
 Identities = 210/365 (57%), Positives = 270/365 (73%), Gaps = 9/365 (2%)
 Frame = +1

Query: 1297 QRSIQDPQGGTRKA*KLMTTRTIMEQPS-TSAPLFEDQVREYRRGQRRLHNMQQSVRRLS 1473
            QR  Q PQ  +      +T  T M  P   + PL+EDQ+R+YR+GQRR+HN+++  RRL 
Sbjct: 3    QRGRQPPQMPS------VTNTTTMSDPEHRTTPLYEDQIRDYRQGQRRMHNLRRRARRLR 56

Query: 1474 RRITEGSSSVH------TLEHQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMH 1635
            R +++G+SS H      TLE +IDPQ  LRLSMQERA +VPAEVLY SR D  +HRVY H
Sbjct: 57   RSLSQGASSSHGGRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRSDTVNHRVYTH 116

Query: 1636 RSEEALLVTEGNQLDQSFI*EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVF 1815
            RSEE++L TEG+Q+D++FI  +S++QLQR+   +IH+GIL VRIQILHRQEEGTMALIVF
Sbjct: 117  RSEESILCTEGSQIDRAFIQPESYDQLQRAGFSFIHVGILQVRIQILHRQEEGTMALIVF 176

Query: 1816 RDNRWQGDQAILASIEVELTQGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEA 1995
            RDNRW GDQ+I A +E++LT+GSQLVYVIPD M+TIGDF RN+Q+SILTRGYE W NGEA
Sbjct: 177  RDNRWTGDQSIFAQMEIDLTKGSQLVYVIPDTMMTIGDFARNVQISILTRGYENWQNGEA 236

Query: 1996 NLLINSGLVGRLSNTPNVGFAYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQ 2175
            NLLI   + GRLSNTPNV FAY+++G  DYL+SHGV A+ G+++  Q L+N  W++RP Q
Sbjct: 237  NLLITRAMTGRLSNTPNVAFAYQIEGATDYLASHGVRAIAGKKFDLQHLRNQQWVLRPPQ 296

Query: 2176 VNIL-IQPTEVNSRNLMDGRVSLSFHDYTTATSLKPPKYNSNDEEIQSDEEEVKI-FHTL 2349
             +I+ +QP  V +RNL+DG +SL F DY        P YN  DEE++SD +E  I  HT+
Sbjct: 297  TDIVPMQPRAVETRNLVDGSISLRFRDYEVQPRTSLPHYNEEDEEVESDVDESSIREHTI 356

Query: 2350 AILII 2364
            A  II
Sbjct: 357  AAWII 361



 Score = 94.4 bits (233), Expect = 8e-16
 Identities = 47/64 (73%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMALIVF DN    DQ+I A ME+DLT+ SQLVYVIPD M+TIGDF
Sbjct: 156 LQVRIQILHRQEEGTMALIVFRDNRWTGDQSIFAQMEIDLTKGSQLVYVIPDTMMTIGDF 215

Query: 263 YRNM 274
            RN+
Sbjct: 216 ARNV 219


>gb|ATZ69463.1| ORF3 polyprotein [Cacao swollen shoot CE virus]
          Length = 1822

 Score =  415 bits (1067), Expect = e-122
 Identities = 208/365 (56%), Positives = 265/365 (72%), Gaps = 9/365 (2%)
 Frame = +1

Query: 1297 QRSIQDPQGGTRKA*KLMTTRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSR 1476
            QR  Q PQ  +      +TT     +  T+ PL+EDQ+R+YRRGQRR+HN+ + +RRL R
Sbjct: 3    QRGRQQPQRPS------VTTTMSDPERGTAQPLYEDQIRDYRRGQRRMHNLSRGMRRLRR 56

Query: 1477 RITE-----GSSSVHTLEHQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRS 1641
             ++      G     TLE +IDPQ  LRLSMQERA IVPAEVLY SRRD  HHRVY HRS
Sbjct: 57   SVSHSPTARGGRYQDTLEQEIDPQTTLRLSMQERARIVPAEVLYRSRRDTVHHRVYTHRS 116

Query: 1642 EEALLVTEGNQLDQSFI*EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRD 1821
            EE++L  EGNQ+D++FI  +S+ QLQR+   ++H+GIL VRIQILHRQEEGTMAL+VFRD
Sbjct: 117  EESILCIEGNQIDRTFIQPESYEQLQRAGFAFVHIGILQVRIQILHRQEEGTMALVVFRD 176

Query: 1822 NRWQGDQAILASIEVELTQGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANL 2001
            NRW GDQ+I A +E++LT+GSQLVYVIPD M+TIGDF RN+Q+SILTRGYE W NGEANL
Sbjct: 177  NRWTGDQSIFAQMEIDLTKGSQLVYVIPDTMMTIGDFARNVQISILTRGYENWQNGEANL 236

Query: 2002 LINSGLVGRLSNTPNVGFAYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVN 2181
            LI   + GRLSNTPNV FAY+++G  DYL+SHGV A+ G+++  Q L+N  W++RP Q  
Sbjct: 237  LITRAMTGRLSNTPNVAFAYQIEGATDYLASHGVKAIAGKKFDLQQLRNQQWVLRPPQAQ 296

Query: 2182 IL-IQPTEVNSRNLMDGRVSLSFHDYTTATSLKPPKYNSNDEEIQSDE---EEVKIFHTL 2349
            I+ +QP  V +RNL+DG +SL F DY T  +   P YN  DEE++S+E   E     HT+
Sbjct: 297  IMPMQPQAVETRNLVDGSISLRFRDYETQPTTSLPHYNEADEEVESEEDGDESTIREHTV 356

Query: 2350 AILII 2364
            A+ II
Sbjct: 357  AVWII 361



 Score = 94.0 bits (232), Expect = 1e-15
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLVYVIPD M+TIGDF
Sbjct: 154 LQVRIQILHRQEEGTMALVVFRDNRWTGDQSIFAQMEIDLTKGSQLVYVIPDTMMTIGDF 213

Query: 263 YRNM 274
            RN+
Sbjct: 214 ARNV 217


>gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  414 bits (1064), Expect = e-121
 Identities = 205/337 (60%), Positives = 257/337 (76%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T TI EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL R +T GS    TLE +IDPQ
Sbjct: 14   TSTISEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRLRRSMT-GSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]
          Length = 1881

 Score =  414 bits (1064), Expect = e-121
 Identities = 205/353 (58%), Positives = 262/353 (74%), Gaps = 10/353 (2%)
 Frame = +1

Query: 1354 TRTIMEQPSTS---------APLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH 1506
            T+T+ E PS +          PLFEDQVR+YR+ QRRL N+Q++ RRL   +T G     
Sbjct: 4    TQTVQENPSVTDGRGRQRDNTPLFEDQVRDYRQNQRRLFNLQRATRRLRGSVT-GRRYQD 62

Query: 1507 TLEHQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQS 1686
            TLE ++DPQA LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L T+GNQ+D++
Sbjct: 63   TLEQEVDPQAALRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESILCTDGNQIDRT 122

Query: 1687 FI*EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEV 1866
            FI  +S  +LQRS M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW+GDQ+I A++EV
Sbjct: 123  FIQPESLERLQRSGMAFIHIGILQVRIQILHRQEEGTMALVVFRDNRWEGDQSIFATMEV 182

Query: 1867 ELTQGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPN 2046
            +LT GSQLV+VIPD M+TIGDF RN+Q+SILTRGY+ W NGEANLLI   + GRLSNTPN
Sbjct: 183  DLTHGSQLVFVIPDTMMTIGDFARNVQLSILTRGYQNWQNGEANLLITRSMTGRLSNTPN 242

Query: 2047 VGFAYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLM 2223
            V FAY++  V DYL+SHGV A+ G++Y  + LQ   W++RP + NI  +QP  V +RNL+
Sbjct: 243  VAFAYQISDVTDYLASHGVKAIAGKKYDLRGLQGQQWVLRPPRANITPMQPNAVETRNLV 302

Query: 2224 DGRVSLSFHDYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILIIPNLSPE 2382
            DG +SL FH+Y  A +   P YN +DEE++S+EE     H +A  + P   P+
Sbjct: 303  DGSISLRFHNYEAAPTTSRPTYNEHDEEVESEEESELREHIVAAWVGPEEFPD 355



 Score = 95.1 bits (235), Expect = 5e-16
 Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN  + DQ+I A+MEVDLT  SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWEGDQSIFATMEVDLTHGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNMV------RYQSW 292
            RN+        YQ+W
Sbjct: 205 ARNVQLSILTRGYQNW 220


>gb|ATZ69459.1| ORF3 polyprotein [Cacao swollen shoot CE virus]
          Length = 1855

 Score =  413 bits (1062), Expect = e-121
 Identities = 202/351 (57%), Positives = 260/351 (74%), Gaps = 4/351 (1%)
 Frame = +1

Query: 1360 TIMEQPS--TSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH-TLEHQIDP 1530
            T M  P   T+ PLF+DQ+R+YR+GQRR+HN+++  RRL R ++ G      TLE +IDP
Sbjct: 16   TTMSDPERGTNTPLFDDQIRDYRQGQRRMHNLRRRARRLQRSLSAGPGRFQETLEQEIDP 75

Query: 1531 QAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFN 1710
            Q  LRLSMQERA +VPAEVLY SRRD  +HRVY HRSEE++L TEGNQ+D++FI  +S  
Sbjct: 76   QTTLRLSMQERARLVPAEVLYRSRRDTVNHRVYTHRSEESILCTEGNQIDRTFIQPESLE 135

Query: 1711 QLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQL 1890
            QL+R+   ++H+GIL VRIQILHRQEEGTMALIVFRDNRW GDQ+I A +EV+LT+GSQL
Sbjct: 136  QLKRAGFAFVHIGILQVRIQILHRQEEGTMALIVFRDNRWTGDQSIFAQMEVDLTKGSQL 195

Query: 1891 VYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQ 2070
            VY+IPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI   + GRLSNTPNV FAY++ 
Sbjct: 196  VYIIPDTMMTIGDFARNVQISILTRGYENWQNGEANLLITRAMTGRLSNTPNVAFAYQID 255

Query: 2071 GVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSF 2247
            G  DYL+SHGV A+ G+++  Q L+N  W++RP Q  I+ +QP  V +RNL+DG +SL F
Sbjct: 256  GATDYLASHGVKAITGKKFDLQHLRNQQWVLRPPQAPIMPMQPRTVETRNLVDGSISLRF 315

Query: 2248 HDYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILIIPNLSPEGRPQNK 2400
             DY T  +   P YN  DEE++S++E     HT+A+ I     P+   + K
Sbjct: 316  RDYETQPTTSLPHYNEEDEEVESEDESTIREHTVAVWIGEEEEPDTTGRTK 366



 Score = 94.4 bits (233), Expect = 8e-16
 Identities = 47/64 (73%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMALIVF DN    DQ+I A MEVDLT+ SQLVY+IPD M+TIGDF
Sbjct: 150 LQVRIQILHRQEEGTMALIVFRDNRWTGDQSIFAQMEVDLTKGSQLVYIIPDTMMTIGDF 209

Query: 263 YRNM 274
            RN+
Sbjct: 210 ARNV 213


>gb|ATZ69454.1| ORF3 polyprotein [Cacao swollen shoot CD virus]
          Length = 1888

 Score =  413 bits (1062), Expect = e-121
 Identities = 206/340 (60%), Positives = 257/340 (75%), Gaps = 3/340 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH--TLEHQID 1527
            T T+ EQ     PLFEDQ+R+YRRGQRRL N+++  RR  R +T GS S H  TLE +ID
Sbjct: 13   TTTVDEQ--REGPLFEDQIRDYRRGQRRLFNLRKKARRAHRALT-GSRSRHQETLEQEID 69

Query: 1528 PQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSF 1707
            PQ  LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI   S 
Sbjct: 70   PQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESILCVGGNQIDRAFIQPSSL 129

Query: 1708 NQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQ 1887
             +LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQAI A +EV+LT+GSQ
Sbjct: 130  ERLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWTGDQAIFAQMEVDLTKGSQ 189

Query: 1888 LVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEV 2067
            LV+VIPD M+TIGDF RN+Q+SILTRGY+ W NGEANLL+   + GRLSNTPNV FAY++
Sbjct: 190  LVFVIPDTMMTIGDFARNVQLSILTRGYDNWQNGEANLLVTRSMTGRLSNTPNVAFAYQI 249

Query: 2068 QGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLS 2244
                DYL+SHGV A+ G++ + Q L+N  W++RP Q ++L +QP  V +RNL+DG +S+ 
Sbjct: 250  ANATDYLASHGVKAIAGKKVNLQQLRNQQWVLRPPQADVLPMQPRAVETRNLIDGSISIR 309

Query: 2245 FHDYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILII 2364
            FHDY  A S   P YN NDEE++S+ E     HT+A+ II
Sbjct: 310  FHDYEVAPSTSGPHYNENDEEVESESEAEIREHTIAVWII 349



 Score = 94.0 bits (232), Expect = 1e-15
 Identities = 47/64 (73%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQAI A MEVDLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWTGDQAIFAQMEVDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  412 bits (1060), Expect = e-121
 Identities = 205/337 (60%), Positives = 256/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T TI EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTISEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  411 bits (1057), Expect = e-120
 Identities = 202/335 (60%), Positives = 253/335 (75%), Gaps = 1/335 (0%)
 Frame = +1

Query: 1360 TIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQAQ 1539
            T   + +   PL+EDQ+R+YRRGQRR+ N+Q+  RRL RR   GS    TLE +IDPQ  
Sbjct: 15   TTTSERNREGPLYEDQIRDYRRGQRRIFNLQRRARRL-RRSMMGSRYQETLEQEIDPQTT 73

Query: 1540 LRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQLQ 1719
            LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   G+Q+D++FI  +S  QLQ
Sbjct: 74   LRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQ 133

Query: 1720 RSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLVYV 1899
            R+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV+V
Sbjct: 134  RTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFV 193

Query: 1900 IPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQGVV 2079
            IPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++    
Sbjct: 194  IPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASAT 253

Query: 2080 DYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFHDY 2256
            DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FHDY
Sbjct: 254  DYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDY 313

Query: 2257 TTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
              ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 314  EAATSASRPHYNEEDEEVESETESEIREHTIAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  411 bits (1057), Expect = e-120
 Identities = 204/346 (58%), Positives = 256/346 (73%), Gaps = 10/346 (2%)
 Frame = +1

Query: 1354 TRTIMEQPSTSA---------PLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVH 1506
            TRT  + PS +A         PL+EDQ+R+YRR QRR+ N+++  RRL R +T GS    
Sbjct: 4    TRTQTQNPSVTATTSEQSREGPLYEDQIRDYRRSQRRIFNLRRRARRLRRSMT-GSRYQE 62

Query: 1507 TLEHQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQS 1686
            TLE +IDPQ  LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++
Sbjct: 63   TLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRA 122

Query: 1687 FI*EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEV 1866
            FI  +S  QLQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E+
Sbjct: 123  FIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEI 182

Query: 1867 ELTQGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPN 2046
            +LT+GSQLV+VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLL+   + GRLSNTPN
Sbjct: 183  DLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLVTRSMTGRLSNTPN 242

Query: 2047 VGFAYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLM 2223
            V FAY++    DYL+SHGV A+ GR+ + Q L+N  W++RP Q NI  +QP  V +RNL+
Sbjct: 243  VAFAYQISSATDYLASHGVKAIAGRKVNLQHLRNQQWVLRPPQANITPMQPRSVETRNLI 302

Query: 2224 DGRVSLSFHDYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DG +S+ FHDY  A S   P YN  DEE++S+ E     HT+A+ I
Sbjct: 303  DGSISIRFHDYEAAVSTSRPHYNEEDEEVESETESEIRGHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
 gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  410 bits (1055), Expect = e-120
 Identities = 204/337 (60%), Positives = 255/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRRGQRR+ N+++  RRL RR   GS    TLE +IDPQ
Sbjct: 14   TTTTSEQ-NREGPLYEDQIRDYRRGQRRIFNLRRRARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   G+Q+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSASRPHYNEEDEEVESETESEIREHTIAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ASG91859.1| polyprotein [Cacao swollen shoot virus]
          Length = 1592

 Score =  408 bits (1049), Expect = e-120
 Identities = 203/337 (60%), Positives = 254/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NRERPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++   Q L+N  WI+RP + +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMDLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ASG91880.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  410 bits (1055), Expect = e-120
 Identities = 204/337 (60%), Positives = 255/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  410 bits (1054), Expect = e-120
 Identities = 204/350 (58%), Positives = 255/350 (72%), Gaps = 8/350 (2%)
 Frame = +1

Query: 1357 RTIMEQPSTS-------APLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLE 1515
            RTI E P  +        PLFEDQVR+YRR QRR+ N++++ RRL R +  G+    TLE
Sbjct: 5    RTISENPGVTNQERQREGPLFEDQVRDYRRNQRRIFNLRRNARRLRRHMM-GTRYQDTLE 63

Query: 1516 HQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI* 1695
             +IDPQ  LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI 
Sbjct: 64   QEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESILCVNGNQIDRAFIQ 123

Query: 1696 EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELT 1875
             +S  QLQR+ M ++H+GIL VR+QILHRQEEGTMALIVFRDNRW GDQ+I A +EV+LT
Sbjct: 124  PESLEQLQRTGMAFVHIGILQVRVQILHRQEEGTMALIVFRDNRWSGDQSIFAQMEVDLT 183

Query: 1876 QGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGF 2055
            +GSQLV+VIPD M+TIGDF RNIQ+SILTRGY+ W NGEANLLI   + GRLSNTPNV F
Sbjct: 184  KGSQLVFVIPDTMMTIGDFARNIQLSILTRGYDNWQNGEANLLITRSMTGRLSNTPNVAF 243

Query: 2056 AYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGR 2232
            AY++    DYL+SHGV A+ G+++    L+   WI+RP Q +I  +QP  V +RNL+DG 
Sbjct: 244  AYQIASATDYLASHGVRAIAGKKFDLHKLRGQQWILRPPQADITPMQPRTVETRNLIDGS 303

Query: 2233 VSLSFHDYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILIIPNLSPE 2382
            +S+ FHDY  A S   P YN  DEE++SDEE     HT+A+   P   P+
Sbjct: 304  ISIRFHDYEAAPSTSRPTYNEQDEEVESDEESELREHTIAVWFGPEELPD 353



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVR+QILHRQEE TMALIVF DN    DQ+I A MEVDLT+ SQLV+VIPD M+TIGDF
Sbjct: 143 LQVRVQILHRQEEGTMALIVFRDNRWSGDQSIFAQMEVDLTKGSQLVFVIPDTMMTIGDF 202

Query: 263 YRNM 274
            RN+
Sbjct: 203 ARNI 206


>gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  410 bits (1054), Expect = e-120
 Identities = 203/337 (60%), Positives = 256/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP + +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS+  P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSISRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]
          Length = 1846

 Score =  410 bits (1054), Expect = e-120
 Identities = 204/337 (60%), Positives = 255/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G+R + Q L+N  WI+RP + +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKRMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ASG91844.1| polyprotein [Cacao swollen shoot virus]
          Length = 1871

 Score =  410 bits (1054), Expect = e-120
 Identities = 209/368 (56%), Positives = 269/368 (73%), Gaps = 12/368 (3%)
 Frame = +1

Query: 1297 QRSIQDPQGGTRKA*KLMTTRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSR 1476
            QR  Q PQ  +        T T+ +    + PL+EDQ+R YR+ QR++HN+++  RRL R
Sbjct: 3    QRGRQPPQMPS-------VTTTMSDPEHRNQPLYEDQIRSYRQRQRQMHNLRRQARRLRR 55

Query: 1477 RITEGSSSVH------TLEHQIDPQAQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHR 1638
             +++GSSS H      TLE +IDPQA LRLSMQERA +VPAEVLY SRRD  +HRVY HR
Sbjct: 56   SLSQGSSSSHGGRYQETLEQEIDPQATLRLSMQERARLVPAEVLYRSRRDTVNHRVYTHR 115

Query: 1639 SEEALLVTEGNQLDQSFI*EQSFNQLQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFR 1818
            SEE++L TEG+Q+D++FI  +S+ QLQR+   +IH+GIL VRIQILHRQEEGTMALIVFR
Sbjct: 116  SEESILCTEGSQIDRAFIQPESYEQLQRAGFAFIHVGILQVRIQILHRQEEGTMALIVFR 175

Query: 1819 DNRWQGDQAILASIEVELTQGSQLVYVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEAN 1998
            D RW GDQ+I A +EV+LT+GSQLVYV+PD M+TIGDF RN+Q+SILTRGYE W NGEAN
Sbjct: 176  DTRWTGDQSIFAQMEVDLTRGSQLVYVVPDTMMTIGDFARNVQISILTRGYENWQNGEAN 235

Query: 1999 LLINSGLVGRLSNTPNVGFAYEVQGVVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQV 2178
            LLI   + GRLSNTPNV FAY++ G  DYL+SHGV A+ G+++  Q L+N  W++RP Q 
Sbjct: 236  LLITRAMTGRLSNTPNVAFAYQIDGATDYLASHGVRAIAGKKFDLQHLRNQQWVLRPPQP 295

Query: 2179 NIL-IQPTEVNSRNLMDGRVSLSFHDYTTATSLKPPKYNSNDEEIQS-----DEEEVKIF 2340
             IL +QP  V +RNL+DG +SL F +Y T   +  P YN  DEE++S     DEE ++  
Sbjct: 296  AILPMQPRAVETRNLVDGSISLRFREYETQPQVHLPHYNEEDEEVESAASDADEETIR-E 354

Query: 2341 HTLAILII 2364
            HT+A+ II
Sbjct: 355  HTVAVWII 362



 Score = 92.0 bits (227), Expect = 4e-15
 Identities = 46/64 (71%), Positives = 52/64 (81%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMALIVF D     DQ+I A MEVDLT+ SQLVYV+PD M+TIGDF
Sbjct: 154 LQVRIQILHRQEEGTMALIVFRDTRWTGDQSIFAQMEVDLTRGSQLVYVVPDTMMTIGDF 213

Query: 263 YRNM 274
            RN+
Sbjct: 214 ARNV 217


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  410 bits (1053), Expect = e-120
 Identities = 204/337 (60%), Positives = 254/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N+++  RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NREGPLYEDQIRDYRRSQRRIFNLRRRARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L   GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQR+ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP Q +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSTSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208


>gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  409 bits (1052), Expect = e-120
 Identities = 202/337 (59%), Positives = 256/337 (75%), Gaps = 1/337 (0%)
 Frame = +1

Query: 1354 TRTIMEQPSTSAPLFEDQVREYRRGQRRLHNMQQSVRRLSRRITEGSSSVHTLEHQIDPQ 1533
            T T  EQ +   PL+EDQ+R+YRR QRR+ N++++ RRL RR   GS    TLE +IDPQ
Sbjct: 14   TSTTSEQ-NREGPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQETLEQEIDPQ 71

Query: 1534 AQLRLSMQERASIVPAEVLYHSRRDDAHHRVYMHRSEEALLVTEGNQLDQSFI*EQSFNQ 1713
              LRLSMQERA +VPAEVLY SRRD  HHRVY HRSEE++L  +GNQ+D++FI  +S  Q
Sbjct: 72   TTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVDGNQVDRAFIQPESLEQ 131

Query: 1714 LQRSKMQYIHLGIL*VRIQILHRQEEGTMALIVFRDNRWQGDQAILASIEVELTQGSQLV 1893
            LQ++ M +IH+GIL VRIQILHRQEEGTMAL+VFRDNRW GDQ+I A +E++LT+GSQLV
Sbjct: 132  LQKTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLV 191

Query: 1894 YVIPDIMLTIGDFYRNIQVSILTRGYEQWLNGEANLLINSGLVGRLSNTPNVGFAYEVQG 2073
            +VIPD M+TIGDF RN+Q+SILTRGYE W NGEANLLI  G+ GRLSNTPNV FAY++  
Sbjct: 192  FVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIAS 251

Query: 2074 VVDYLSSHGVHALPGRRYSTQSLQNLNWIIRPTQVNIL-IQPTEVNSRNLMDGRVSLSFH 2250
              DYL+SHGV A+ G++ + Q L+N  WI+RP + +I  +QP  V +RNL+DG +S+ FH
Sbjct: 252  ATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFH 311

Query: 2251 DYTTATSLKPPKYNSNDEEIQSDEEEVKIFHTLAILI 2361
            DY  ATS   P YN  DEE++S+ E     HT+A+ I
Sbjct: 312  DYEAATSXSRPHYNEEDEEVESETESEIREHTVAVWI 348



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 45/64 (70%), Positives = 53/64 (82%)
 Frame = +2

Query: 83  IQVRIQILHRQEESTMALIVFHDNH*QRDQAILASMEVDLTQESQLVYVIPDIMLTIGDF 262
           +QVRIQILHRQEE TMAL+VF DN    DQ+I A ME+DLT+ SQLV+VIPD M+TIGDF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDF 204

Query: 263 YRNM 274
            RN+
Sbjct: 205 ARNV 208