BLASTX nr result
ID: Cheilocostus21_contig00029211
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00029211
(655 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009399734.1| PREDICTED: F-box protein SKIP28 [Musa acumin... 60 3e-12
ref|XP_010906927.1| PREDICTED: F-box protein SKIP28 isoform X1 [... 52 1e-07
ref|XP_010906928.1| PREDICTED: F-box protein SKIP28 isoform X2 [... 52 1e-07
ref|XP_008809419.1| PREDICTED: F-box protein SKIP28-like, partia... 51 2e-07
ref|XP_020269324.1| F-box protein SKIP28 [Asparagus officinalis]... 54 8e-07
ref|XP_003630913.1| F-box SKIP28-like protein [Medicago truncatu... 57 7e-06
gb|EMS53259.1| F-box protein SKIP28 [Triticum urartu] 55 8e-06
>ref|XP_009399734.1| PREDICTED: F-box protein SKIP28 [Musa acuminata subsp. malaccensis]
Length = 326
Score = 60.1 bits (144), Expect(3) = 3e-12
Identities = 26/46 (56%), Positives = 27/46 (58%), Gaps = 17/46 (36%)
Frame = -2
Query: 636 EDCGGCLD-----------------CWLHLPKCNTCNRPYCKGHSN 550
EDCGGCLD CWL LPKCN CN+PYCKGHSN
Sbjct: 252 EDCGGCLDFDELGEETVCSHLLCVKCWLDLPKCNICNQPYCKGHSN 297
Score = 35.4 bits (80), Expect(3) = 3e-12
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -3
Query: 536 SKFLGFVCDQCKESASSLCHSPYG 465
SKFLGFVC+QC ES SS +S G
Sbjct: 303 SKFLGFVCEQCMESTSSSNYSTCG 326
Score = 23.9 bits (50), Expect(3) = 3e-12
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 655 ARCEDCGG 632
ARCEDCGG
Sbjct: 249 ARCEDCGG 256
>ref|XP_010906927.1| PREDICTED: F-box protein SKIP28 isoform X1 [Elaeis guineensis]
Length = 339
Score = 52.4 bits (124), Expect(3) = 1e-07
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 17/47 (36%)
Frame = -2
Query: 636 EDCGGCLD-----------------CWLHLPKCNTCNRPYCKGHSNI 547
E+CGGC+D CWLHLPKCN CN+PYCK +++
Sbjct: 259 EECGGCIDLEGSGEKAICLHLLCLQCWLHLPKCNMCNQPYCKWDADL 305
Score = 28.5 bits (62), Expect(3) = 1e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 524 GFVCDQCKESASSLCHSPYG 465
GFVC++C+ES S HS G
Sbjct: 314 GFVCERCRESGRSSYHSASG 333
Score = 22.3 bits (46), Expect(3) = 1e-07
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1
Query: 655 ARCEDCGG 632
ARCE+CGG
Sbjct: 256 ARCEECGG 263
>ref|XP_010906928.1| PREDICTED: F-box protein SKIP28 isoform X2 [Elaeis guineensis]
Length = 335
Score = 52.4 bits (124), Expect(3) = 1e-07
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 17/47 (36%)
Frame = -2
Query: 636 EDCGGCLD-----------------CWLHLPKCNTCNRPYCKGHSNI 547
E+CGGC+D CWLHLPKCN CN+PYCK +++
Sbjct: 255 EECGGCIDLEGSGEKAICLHLLCLQCWLHLPKCNMCNQPYCKWDADL 301
Score = 28.5 bits (62), Expect(3) = 1e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 524 GFVCDQCKESASSLCHSPYG 465
GFVC++C+ES S HS G
Sbjct: 310 GFVCERCRESGRSSYHSASG 329
Score = 22.3 bits (46), Expect(3) = 1e-07
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1
Query: 655 ARCEDCGG 632
ARCE+CGG
Sbjct: 252 ARCEECGG 259
>ref|XP_008809419.1| PREDICTED: F-box protein SKIP28-like, partial [Phoenix dactylifera]
Length = 330
Score = 51.2 bits (121), Expect(3) = 2e-07
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 17/47 (36%)
Frame = -2
Query: 636 EDCGGCLD-----------------CWLHLPKCNTCNRPYCKGHSNI 547
E+CGGC+D CWL PKCN CN PYCK H+N+
Sbjct: 250 EECGGCIDFEESGEKAICLHLLCLQCWLRRPKCNMCNLPYCKWHANL 296
Score = 29.3 bits (64), Expect(3) = 2e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 524 GFVCDQCKESASSLCHS 474
GF+CDQC+E SS HS
Sbjct: 305 GFICDQCRELESSSYHS 321
Score = 22.3 bits (46), Expect(3) = 2e-07
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1
Query: 655 ARCEDCGG 632
ARCE+CGG
Sbjct: 247 ARCEECGG 254
>ref|XP_020269324.1| F-box protein SKIP28 [Asparagus officinalis]
gb|ONK66202.1| uncharacterized protein A4U43_C06F5290 [Asparagus officinalis]
Length = 307
Score = 54.3 bits (129), Expect(3) = 8e-07
Identities = 23/44 (52%), Positives = 24/44 (54%), Gaps = 17/44 (38%)
Frame = -2
Query: 636 EDCGGCLD-----------------CWLHLPKCNTCNRPYCKGH 556
EDCGGC+D CWL LPKCN CNRPYC GH
Sbjct: 234 EDCGGCIDSDYIGDETACSHLLCLECWLRLPKCNLCNRPYCFGH 277
Score = 23.9 bits (50), Expect(3) = 8e-07
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 655 ARCEDCGG 632
ARCEDCGG
Sbjct: 231 ARCEDCGG 238
Score = 22.3 bits (46), Expect(3) = 8e-07
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 524 GFVCDQCKESASSL 483
GFVC+ C E +L
Sbjct: 289 GFVCEHCNEETEAL 302
>ref|XP_003630913.1| F-box SKIP28-like protein [Medicago truncatula]
gb|AET05389.1| F-box SKIP28-like protein [Medicago truncatula]
Length = 320
Score = 56.6 bits (135), Expect = 7e-06
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = -2
Query: 651 GARIVED--CGG--CLDCWLHLPKCNTCNRPYCKGHSNIPVTFQVSWFCVRS 508
G+ +ED CG CL+CWL LPKCN CN+PYCK H+N W+C S
Sbjct: 255 GSEELEDVACGDFLCLECWLQLPKCNFCNKPYCKQHTN--------WWCTSS 298
>gb|EMS53259.1| F-box protein SKIP28 [Triticum urartu]
Length = 201
Score = 55.5 bits (132), Expect = 8e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -2
Query: 621 CLDCWLHLPKCNTCNRPYCKGHSNIPVTFQVS 526
CLDCWL +PKC+TCNRPYC+ H N+ V+ ++
Sbjct: 148 CLDCWLTVPKCSTCNRPYCERHENLMVSLSMA 179