BLASTX nr result
ID: Cheilocostus21_contig00029189
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00029189
(617 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009399217.1| PREDICTED: polyadenylation and cleavage fact... 119 1e-27
ref|XP_009399215.1| PREDICTED: polyadenylation and cleavage fact... 119 1e-27
ref|XP_018683567.1| PREDICTED: polyadenylation and cleavage fact... 102 1e-21
ref|XP_009404994.1| PREDICTED: polyadenylation and cleavage fact... 102 1e-21
ref|XP_009404993.1| PREDICTED: polyadenylation and cleavage fact... 102 1e-21
ref|XP_009404992.1| PREDICTED: polyadenylation and cleavage fact... 102 1e-21
ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage fact... 80 8e-14
ref|XP_010931817.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 73 3e-11
ref|XP_008808984.1| PREDICTED: polyadenylation and cleavage fact... 72 3e-11
ref|XP_008808980.1| PREDICTED: polyadenylation and cleavage fact... 72 3e-11
>ref|XP_009399217.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X2 [Musa acuminata subsp. malaccensis]
Length = 1000
Score = 119 bits (299), Expect = 1e-27
Identities = 93/221 (42%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Frame = +3
Query: 12 SSAPTMLPPVHVSHSLTLRTVPLAQSPISTL-DASEANK--LIQGR--CIFVPEQQYDVA 176
SSAP +LP +H S L ++P Q PIS+ D S A K IQG FVPEQQYD+A
Sbjct: 605 SSAPVILPSIHKSQPRPLLSIPQTQKPISSSPDVSLATKSIAIQGSHPTRFVPEQQYDIA 664
Query: 177 DGKISDSVKLHHLPYQPSVL---SQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQ 347
D K DSVKL HLPY+PS L +Q + GI P+ S +Y SILPP + V SYSV Q
Sbjct: 665 DRKNKDSVKLLHLPYKPSGLPHLNQQTQKQGISEPIPSQGSYGSILPPAEVMVPSYSVGQ 724
Query: 348 LQNLQPTLGHGVGIPAL-ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXX 494
N PTL HG AL +SS TP +AV
Sbjct: 725 PLNFPPTLLHGATTSALQSSSFVTPSIAVQNTTDALLHAPAGLLPPLPPGPPPSLSQIGL 784
Query: 495 XXQNTCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
Q+ LI+SLMAQGLISL S Q QDS
Sbjct: 785 TSQSMSSAVSGSSTSAFSGLISSLMAQGLISLKSPPQPQDS 825
>ref|XP_009399215.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Musa acuminata subsp. malaccensis]
ref|XP_009399216.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Musa acuminata subsp. malaccensis]
Length = 1039
Score = 119 bits (299), Expect = 1e-27
Identities = 93/221 (42%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Frame = +3
Query: 12 SSAPTMLPPVHVSHSLTLRTVPLAQSPISTL-DASEANK--LIQGR--CIFVPEQQYDVA 176
SSAP +LP +H S L ++P Q PIS+ D S A K IQG FVPEQQYD+A
Sbjct: 644 SSAPVILPSIHKSQPRPLLSIPQTQKPISSSPDVSLATKSIAIQGSHPTRFVPEQQYDIA 703
Query: 177 DGKISDSVKLHHLPYQPSVL---SQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQ 347
D K DSVKL HLPY+PS L +Q + GI P+ S +Y SILPP + V SYSV Q
Sbjct: 704 DRKNKDSVKLLHLPYKPSGLPHLNQQTQKQGISEPIPSQGSYGSILPPAEVMVPSYSVGQ 763
Query: 348 LQNLQPTLGHGVGIPAL-ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXX 494
N PTL HG AL +SS TP +AV
Sbjct: 764 PLNFPPTLLHGATTSALQSSSFVTPSIAVQNTTDALLHAPAGLLPPLPPGPPPSLSQIGL 823
Query: 495 XXQNTCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
Q+ LI+SLMAQGLISL S Q QDS
Sbjct: 824 TSQSMSSAVSGSSTSAFSGLISSLMAQGLISLKSPPQPQDS 864
>ref|XP_018683567.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X4 [Musa acuminata subsp. malaccensis]
Length = 838
Score = 102 bits (255), Expect = 1e-21
Identities = 79/217 (36%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Frame = +3
Query: 27 MLPPVHVSHSLTLRTVPLAQSPIS-TLDASEANKLIQGRC----IFVPEQQYDVADGKIS 191
MLP H S SL ++P Q ++ LD SE NKL+ + IFVPE+QYD+ D S
Sbjct: 447 MLPSAHKSQSLPCLSIPPNQKLVNGQLDISEPNKLLMNQGADPRIFVPEKQYDIVDKYSS 506
Query: 192 DSVKLHHLPYQP---SVLSQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQNLQ 362
+SVK H PYQP + L+Q GI +P+++ +TY SILPP VSSY + Q N
Sbjct: 507 ESVKFIHFPYQPPSNTHLNQQSQVQGISMPMRTPETYGSILPPATALVSSYLIGQPVNHL 566
Query: 363 PTLGHGVGIPAL--ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXXXXQN 506
TLG GV + ++ SS ATP V VH Q
Sbjct: 567 QTLGTGVSVVSVLPCSSFATPSVTVHRTIDTSLHLHGSLLPPLPPGPRPASSQMGPTPQT 626
Query: 507 TCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI SLM QGLISL + Q+Q++
Sbjct: 627 MSSSISSSPASAYSGLIGSLMEQGLISLKPSVQSQET 663
>ref|XP_009404994.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X3 [Musa acuminata subsp. malaccensis]
Length = 956
Score = 102 bits (255), Expect = 1e-21
Identities = 79/217 (36%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Frame = +3
Query: 27 MLPPVHVSHSLTLRTVPLAQSPIS-TLDASEANKLIQGRC----IFVPEQQYDVADGKIS 191
MLP H S SL ++P Q ++ LD SE NKL+ + IFVPE+QYD+ D S
Sbjct: 565 MLPSAHKSQSLPCLSIPPNQKLVNGQLDISEPNKLLMNQGADPRIFVPEKQYDIVDKYSS 624
Query: 192 DSVKLHHLPYQP---SVLSQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQNLQ 362
+SVK H PYQP + L+Q GI +P+++ +TY SILPP VSSY + Q N
Sbjct: 625 ESVKFIHFPYQPPSNTHLNQQSQVQGISMPMRTPETYGSILPPATALVSSYLIGQPVNHL 684
Query: 363 PTLGHGVGIPAL--ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXXXXQN 506
TLG GV + ++ SS ATP V VH Q
Sbjct: 685 QTLGTGVSVVSVLPCSSFATPSVTVHRTIDTSLHLHGSLLPPLPPGPRPASSQMGPTPQT 744
Query: 507 TCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI SLM QGLISL + Q+Q++
Sbjct: 745 MSSSISSSPASAYSGLIGSLMEQGLISLKPSVQSQET 781
>ref|XP_009404993.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X2 [Musa acuminata subsp. malaccensis]
Length = 956
Score = 102 bits (255), Expect = 1e-21
Identities = 79/217 (36%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Frame = +3
Query: 27 MLPPVHVSHSLTLRTVPLAQSPIS-TLDASEANKLIQGRC----IFVPEQQYDVADGKIS 191
MLP H S SL ++P Q ++ LD SE NKL+ + IFVPE+QYD+ D S
Sbjct: 565 MLPSAHKSQSLPCLSIPPNQKLVNGQLDISEPNKLLMNQGADPRIFVPEKQYDIVDKYSS 624
Query: 192 DSVKLHHLPYQP---SVLSQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQNLQ 362
+SVK H PYQP + L+Q GI +P+++ +TY SILPP VSSY + Q N
Sbjct: 625 ESVKFIHFPYQPPSNTHLNQQSQVQGISMPMRTPETYGSILPPATALVSSYLIGQPVNHL 684
Query: 363 PTLGHGVGIPAL--ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXXXXQN 506
TLG GV + ++ SS ATP V VH Q
Sbjct: 685 QTLGTGVSVVSVLPCSSFATPSVTVHRTIDTSLHLHGSLLPPLPPGPRPASSQMGPTPQT 744
Query: 507 TCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI SLM QGLISL + Q+Q++
Sbjct: 745 MSSSISSSPASAYSGLIGSLMEQGLISLKPSVQSQET 781
>ref|XP_009404992.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Musa acuminata subsp. malaccensis]
Length = 991
Score = 102 bits (255), Expect = 1e-21
Identities = 79/217 (36%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Frame = +3
Query: 27 MLPPVHVSHSLTLRTVPLAQSPIS-TLDASEANKLIQGRC----IFVPEQQYDVADGKIS 191
MLP H S SL ++P Q ++ LD SE NKL+ + IFVPE+QYD+ D S
Sbjct: 600 MLPSAHKSQSLPCLSIPPNQKLVNGQLDISEPNKLLMNQGADPRIFVPEKQYDIVDKYSS 659
Query: 192 DSVKLHHLPYQP---SVLSQHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQNLQ 362
+SVK H PYQP + L+Q GI +P+++ +TY SILPP VSSY + Q N
Sbjct: 660 ESVKFIHFPYQPPSNTHLNQQSQVQGISMPMRTPETYGSILPPATALVSSYLIGQPVNHL 719
Query: 363 PTLGHGVGIPAL--ASSLATP-VAVH---------XXXXXXXXXXXXXXXXXXXXXXXQN 506
TLG GV + ++ SS ATP V VH Q
Sbjct: 720 QTLGTGVSVVSVLPCSSFATPSVTVHRTIDTSLHLHGSLLPPLPPGPRPASSQMGPTPQT 779
Query: 507 TCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI SLM QGLISL + Q+Q++
Sbjct: 780 MSSSISSSPASAYSGLIGSLMEQGLISLKPSVQSQET 816
>ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like [Elaeis
guineensis]
Length = 1053
Score = 80.1 bits (196), Expect = 8e-14
Identities = 74/221 (33%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Frame = +3
Query: 18 APTMLPPVHVSHSLTLRTVPLAQSPI-STLDASEANKLIQGR----CIFVPEQQYDVADG 182
AP + PPVH + L L +P Q S+ D EANK I + + + Q D AD
Sbjct: 658 APIIWPPVHNTQQLPLLPIPPNQKQFKSSFDHVEANKPILNQRPESFFNLSQYQNDTADR 717
Query: 183 KISDSVKLHHLPYQPSVLS---QHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQ 353
KIS+S KL LPYQ L+ Q E G + +QS ++ SIL P Q+SS VAQ
Sbjct: 718 KISNSNKLLQLPYQQPGLAHANQQSQEQGASMQIQSQKSNGSILSPAPAQLSSQIVAQPL 777
Query: 354 NLQPTLGHGVGIPAL----ASSLATPVAVH---------XXXXXXXXXXXXXXXXXXXXX 494
N T G G+ + ++ S L + VAV+
Sbjct: 778 NHVQTSGQGIAMGSVLHNQLSGLPSSVAVNSVPDTSLRVNASVLPPLPPGPPPASSQMGP 837
Query: 495 XXQNTCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQDS 617
QNT LI++LMAQGLISL Q+QDS
Sbjct: 838 VLQNTGSMISSSPAGAFSGLISTLMAQGLISLTPPDQSQDS 878
>ref|XP_010931817.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylation and cleavage factor
homolog 4 [Elaeis guineensis]
Length = 1070
Score = 72.8 bits (177), Expect = 3e-11
Identities = 70/220 (31%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Frame = +3
Query: 18 APTMLPPVHVSHSLTLRTVPLAQSPI-STLDASEANK--LIQG--RCIFVPEQQYDVADG 182
APT+ PPVH S L L VP Q S D EANK L QG + + Q D AD
Sbjct: 675 APTVWPPVHKSQPLPLLPVPPNQKQCKSPFDFLEANKPLLNQGPESSFYFSQHQNDTADR 734
Query: 183 KISDSVKLHHLPYQPSVLS---QHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQ 353
K +S KL +PYQ L+ + E G + +Q+ + ++ ++P Q+SS+ VAQ
Sbjct: 735 KNLNSNKLLQVPYQQPGLALENRQSHERGTTMQIQAQEAHRGLIPSAPAQLSSHLVAQPL 794
Query: 354 NLQPTLGHGVG----IPALASSLATPVAVH---------XXXXXXXXXXXXXXXXXXXXX 494
N + G GV +P S L + VA++
Sbjct: 795 NHVQSSGQGVAMVSVLPNPLSRLPSSVAMNNMPDTSLLVDASILPPLPPGPPPASSQMGP 854
Query: 495 XXQNTCXXXXXXXXXXXXXLINSLMAQGLISLNSNSQAQD 614
QN LI+SLMAQGLISLN + +QD
Sbjct: 855 VSQNAGSVVSSSPASAFSGLISSLMAQGLISLNPPAPSQD 894
>ref|XP_008808984.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X2 [Phoenix dactylifera]
Length = 977
Score = 72.4 bits (176), Expect = 3e-11
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 9/208 (4%)
Frame = +3
Query: 21 PTMLPPVHVSHSLTLRTVPLAQSPI-STLDASEANKLIQGR----CIFVPEQQYDVADGK 185
P + P VH + L L +P Q + S D EA+K I + +++ + Q D AD K
Sbjct: 597 PIVRPSVHNNQQLPLLPIPPNQKQLKSPFDDVEAHKPIPNQRPESFLYLSQYQNDTADRK 656
Query: 186 ISDSVKLHHLPYQPSVLS---QHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQN 356
+S KL +PYQ L+ Q E G + +QS ++ SI+ P Q+SS VAQ N
Sbjct: 657 TLNSNKLLQVPYQQPGLAHSNQQSQEQGTTMQIQSQKSNGSIILPASAQLSSQMVAQPLN 716
Query: 357 LQPTLGHGVGIPALASSLATPVAVHXXXXXXXXXXXXXXXXXXXXXXX-QNTCXXXXXXX 533
P H G+P++ + ++H QNT
Sbjct: 717 HVPN--HLSGLPSVGVNSMPDTSLHVNASVLPPLPPGPPPASSQMGPVLQNTGSMISSSP 774
Query: 534 XXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI++LMAQGLISL +Q+QDS
Sbjct: 775 AGAFSGLISTLMAQGLISLTPPAQSQDS 802
>ref|XP_008808980.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808981.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808982.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808983.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
Length = 1065
Score = 72.4 bits (176), Expect = 3e-11
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 9/208 (4%)
Frame = +3
Query: 21 PTMLPPVHVSHSLTLRTVPLAQSPI-STLDASEANKLIQGR----CIFVPEQQYDVADGK 185
P + P VH + L L +P Q + S D EA+K I + +++ + Q D AD K
Sbjct: 685 PIVRPSVHNNQQLPLLPIPPNQKQLKSPFDDVEAHKPIPNQRPESFLYLSQYQNDTADRK 744
Query: 186 ISDSVKLHHLPYQPSVLS---QHGMEHGIPLPVQSLQTYQSILPPGQTQVSSYSVAQLQN 356
+S KL +PYQ L+ Q E G + +QS ++ SI+ P Q+SS VAQ N
Sbjct: 745 TLNSNKLLQVPYQQPGLAHSNQQSQEQGTTMQIQSQKSNGSIILPASAQLSSQMVAQPLN 804
Query: 357 LQPTLGHGVGIPALASSLATPVAVHXXXXXXXXXXXXXXXXXXXXXXX-QNTCXXXXXXX 533
P H G+P++ + ++H QNT
Sbjct: 805 HVPN--HLSGLPSVGVNSMPDTSLHVNASVLPPLPPGPPPASSQMGPVLQNTGSMISSSP 862
Query: 534 XXXXXXLINSLMAQGLISLNSNSQAQDS 617
LI++LMAQGLISL +Q+QDS
Sbjct: 863 AGAFSGLISTLMAQGLISLTPPAQSQDS 890