BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00028797
         (558 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD13304.1| polyprotein [Solanum lycopersicum]                      39   1e-07

>gb|AAD13304.1| polyprotein [Solanum lycopersicum]
          Length = 1542

 Score = 39.3 bits (90), Expect(3) = 1e-07
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
 Frame = +3

Query: 390  CSS--SAKLFYNNVVEYLGLLANIISDYDSCFIEYF*ISLFN 509
            CSS  +A+LFY +V++Y G+ A+I+SD D+ F   F  +LFN
Sbjct: 1203 CSSEVAAELFYKHVIKYFGVPADIVSDRDTRFTGRFWTALFN 1244



 Score = 33.9 bits (76), Expect(3) = 1e-07
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 229  EKGGGFVATLPILKKPWM*FSYT-IGGMPMVDRQSSIFVVINQ 354
            +K  G +  LPI ++PW+  S   I G P VD ++SI VV+++
Sbjct: 1147 KKEAGLLQPLPIPERPWLSVSMDFISGFPKVDGKASIMVVVDR 1189



 Score = 29.6 bits (65), Expect(3) = 1e-07
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 161  KMELDKNIYMRTRLVYYQDKTKRRKEVVLLLP 256
            KME D   Y++T  V   DKT+R+KE  LL P
Sbjct: 1124 KMEDDIEAYVKTCHVCQVDKTERKKEAGLLQP 1155