BLASTX nr result

ID: Cheilocostus21_contig00028606 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00028606
         (673 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009413599.1| PREDICTED: regulation of nuclear pre-mRNA do...    63   6e-08
ref|XP_009413598.1| PREDICTED: UPF0400 protein C337.03 isoform X...    63   6e-08

>ref|XP_009413599.1| PREDICTED: regulation of nuclear pre-mRNA domain-containing protein
           2 isoform X2 [Musa acuminata subsp. malaccensis]
          Length = 510

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 51/152 (33%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   SNGLVGHQIKEDHADNKRLKLEDSVPSYFXXXXXXXXXXXXXXXXXDFLNQLP-QPPSPV 177
           S+G V    K+DH+DNKRLK+ED++PSY                  D L++ P Q PSPV
Sbjct: 359 SDGAVDPSNKKDHSDNKRLKVEDNMPSY----VPLLQPPLPPFPHPDLLSRPPLQLPSPV 414

Query: 178 TPRAPTVEXXXXXXXXXXXXXXXXXXXXXXXXXXGTPQFMPITSGATTNV-----XXXXX 342
           T  + TVE                           TPQFM I +G  T +          
Sbjct: 415 THPSSTVEPPPLPPPFPPVPPPPSSV---------TPQFMQIAAGPATGMPFGYGPPPPL 465

Query: 343 XXXXXXXXXXXXXASNPYHGFQAAEVVNTIGQ 438
                        A NPYHGFQA+E VN +GQ
Sbjct: 466 PNFPMLGMQPYPSALNPYHGFQASEGVNHLGQ 497


>ref|XP_009413598.1| PREDICTED: UPF0400 protein C337.03 isoform X1 [Musa acuminata
           subsp. malaccensis]
          Length = 512

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 51/152 (33%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
 Frame = +1

Query: 1   SNGLVGHQIKEDHADNKRLKLEDSVPSYFXXXXXXXXXXXXXXXXXDFLNQLP-QPPSPV 177
           S+G V    K+DH+DNKRLK+ED++PSY                  D L++ P Q PSPV
Sbjct: 361 SDGAVDPSNKKDHSDNKRLKVEDNMPSY----VPLLQPPLPPFPHPDLLSRPPLQLPSPV 416

Query: 178 TPRAPTVEXXXXXXXXXXXXXXXXXXXXXXXXXXGTPQFMPITSGATTNV-----XXXXX 342
           T  + TVE                           TPQFM I +G  T +          
Sbjct: 417 THPSSTVEPPPLPPPFPPVPPPPSSV---------TPQFMQIAAGPATGMPFGYGPPPPL 467

Query: 343 XXXXXXXXXXXXXASNPYHGFQAAEVVNTIGQ 438
                        A NPYHGFQA+E VN +GQ
Sbjct: 468 PNFPMLGMQPYPSALNPYHGFQASEGVNHLGQ 499


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