BLASTX nr result
ID: Cheilocostus21_contig00027626
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00027626
(4744 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo... 421 0.0
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen... 403 0.0
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo... 364 0.0
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 385 0.0
gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymera... 444 0.0
gb|KYP59064.1| Retrovirus-related Pol polyprotein from transposo... 310 0.0
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 353 0.0
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 399 e-173
gb|AAK29467.1| polyprotein-like [Solanum chilense] 337 e-172
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 318 e-170
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo... 376 e-162
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo... 376 e-162
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 335 e-158
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense] 358 e-156
gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposo... 311 e-147
dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subt... 249 e-138
gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposo... 344 e-137
emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera] 343 e-132
emb|CAN60331.1| hypothetical protein VITISV_024553 [Vitis vinifera] 228 e-127
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] 417 e-125
>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1321
Score = 421 bits (1081), Expect(4) = 0.0
Identities = 217/353 (61%), Positives = 258/353 (73%), Gaps = 1/353 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKFDS I S FKRT D CVYI +G F+ILLLYVDDMLI+G
Sbjct: 954 KKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLILLLYVDDMLIVG 1013
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D I+ LK ELSK+FD+KD+G A+ ILGMDII +RK +LW+SQ++Y+ER+++RFN++
Sbjct: 1014 QDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDRKAGKLWLSQERYIERVLERFNMK 1073
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
NAK + TPL HF MS I YSSA GSLMY VCTR +IA+AVGV
Sbjct: 1074 NAKPVITPLVGHFKLSKKSCPTIRE---KMSTIPYSSAVGSLMYAMVCTRPDIAHAVGVV 1130
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SR+LS K H +A+KWI RYLRGTSK+ L FG +K +LEG+TD DM G LD KS S Y
Sbjct: 1131 SRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKPILEGYTDADMAGDLDDRKSTSGY 1190
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
+F F+GG +SWQSKLQKCI EA KE LWMK+FL ELGLKQ+EY+V+CD
Sbjct: 1191 IFTFSGGAISWQSKLQKCISLSTTEAEYVAATEAGKEMLWMKKFLQELGLKQEEYIVYCD 1250
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
SQSALDLSKNTMYH+RTKHI+VRYH + IE + QLKKIHTD+N DMLTK
Sbjct: 1251 SQSALDLSKNTMYHSRTKHIDVRYHWIRLAIEKQLFQLKKIHTDRNAADMLTK 1303
Score = 366 bits (939), Expect(4) = 0.0
Identities = 198/443 (44%), Positives = 278/443 (62%), Gaps = 10/443 (2%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
YS+W+ MMED+ +L DL+DP+ GD +KP+ +S+ +W++L +K L TIR+WVDI++++
Sbjct: 16 YSLWKSMMEDRLNLL--DLYDPIEGDGSKPEKMSDGDWKKLKKKTLSTIRQWVDITLYNQ 73
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V++ET V+WKKL + YE K A KIF +RKL NLK + GR++AE L+D+ L+ QL +
Sbjct: 74 VSKETDPQVLWKKLESMYETKNAQSKIFMMRKLMNLKLQEGRAVAEHLNDFEGLVMQLIS 133
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
+ L DE+ + DTLVV++ NSAP GKV+ L RN IR
Sbjct: 134 AGLTLEDEMQALLLLGSLPDSWDTLVVSLSNSAPEGKVS-------LNMVRNSILNEEIR 186
Query: 3698 VKSCLYCIK*RFKNMGH----DFRGRSKSK------NWSKSRELMKCYHCGKIGHIXXXX 3549
+ KN H + R RSKS+ + SKSRE CY+CGK GH+
Sbjct: 187 RRDVA-------KNETHALVTERRSRSKSRTPRGHRDHSKSRERRSCYNCGKPGHLKKNC 239
Query: 3548 XXXXXXXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHC 3369
+ N +T + ++ ++L+C G+ ++ + EWI+D+ A+ HC
Sbjct: 240 RFLKKEIQDKNQAND--RNTAATTSASDDEITLLCNQGECCHIAEPDEEWIIDSAASYHC 297
Query: 3368 VPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLL 3189
VPKRE FTTY+ GDFG MGN S S I+G+GDI ++T CTL L+DVR I D+R+NL+
Sbjct: 298 VPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQTGVGCTLILKDVRHIPDIRLNLI 357
Query: 3188 AVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNL 3009
+VNVLDKEGY+ K + KL KGS++VAK LCCT+YK ++K +NAV++DASPNL
Sbjct: 358 SVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKTYVKVCKGQLNAVENDASPNL 417
Query: 3008 WHNILAHMSEKELQLLARQSLIP 2940
WH LAH+SEK LQLLA+QSLIP
Sbjct: 418 WHRRLAHISEKGLQLLAKQSLIP 440
Score = 330 bits (847), Expect(4) = 0.0
Identities = 173/328 (52%), Positives = 224/328 (68%), Gaps = 1/328 (0%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE YSHL VFGCKAF+HV KE RSKLD KA P +F+GYG EEFGY+LWDP++K+++RSR
Sbjct: 634 KEVSYSHLKVFGCKAFMHVPKEQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSR 693
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRR-AIDDEIAQETKHDIXXXXXXX 2003
D+IFHEHETI D LK + + + T+ +P A D QE +H+
Sbjct: 694 DVIFHEHETIED---LKGGEAAKPMEDGVNPTSHVPSECATDGRQTQEPEHETEEPVFGD 750
Query: 2002 XXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEP 1823
PD +QG+ S + +E Q+ S EY+L+ +GEP
Sbjct: 751 EESVDEEV-VVPDTEANEQGEPSYTSGQVEPQIRRSTRERQPSTKYPSSEYILIADEGEP 809
Query: 1822 KSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGDKLV 1643
+S+Q++QS D CW++A+++EMDSLK+NNTYELV+LP G+R LKNKW+FKLKK+GDKLV
Sbjct: 810 ESFQEVQSHKDKGCWVKAMQEEMDSLKRNNTYELVQLPKGRRVLKNKWVFKLKKDGDKLV 869
Query: 1642 KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD* 1463
++KA LVVKGF+ ++GIDF +IFS V+KM SI V+LGL S++LE+EQLDVKT FLHGD
Sbjct: 870 RHKARLVVKGFSQKQGIDFEEIFSPVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDL 929
Query: 1462 QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
EEIYM Q E F V+GKE VCKLKK L
Sbjct: 930 DEEIYMEQPEGFEVKGKEDMVCKLKKSL 957
Score = 175 bits (444), Expect(4) = 0.0
Identities = 101/201 (50%), Positives = 128/201 (63%), Gaps = 6/201 (2%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCIPAKRKK-KLDYN*SILMYVVPWR*SP*VAVSTLLHFL 2746
KG +N CDY + KH RVSF + RKK KL+ S + P + F+
Sbjct: 443 KGDFLNPCDYCVFGKHHRVSFKKSSNRKKNKLELVHSDVCG--PMEVESLGGNKYFVTFI 500
Query: 2745 MMLHEKLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC--- 2575
K W++ LQ KSQV Q F FHA+V+RET LKCI ++NGGEYIS+ F+ YC
Sbjct: 501 DDASRKTWVYLLQAKSQVFQCFQQFHAMVERETGKQLKCIRTDNGGEYISKEFKDYCSKY 560
Query: 2574 -VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQSI 2398
++HE T PGTPQHN +AER+N TIVE+VRC+LRMAKLPK F G+A+ YLINR S+
Sbjct: 561 GIRHEKTVPGTPQHNGIAERMNRTIVEKVRCMLRMAKLPKPFWGEAVQTAVYLINRLPSV 620
Query: 2397 PLGFDILEKVWT*KN-PYTHI 2338
PLGFDI E+VW K Y+H+
Sbjct: 621 PLGFDIPERVWAGKEVSYSHL 641
>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1340
Score = 403 bits (1036), Expect(4) = 0.0
Identities = 204/354 (57%), Positives = 258/354 (72%), Gaps = 1/354 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKFDS + H +KRT D CVY++ G FIILLLYVDDMLI+G
Sbjct: 967 KKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDMLIVG 1026
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D + I +LK +LSKSFD+KDLGPA+QILGM+I +R+ +LW+SQ++YVER+++RFN++
Sbjct: 1027 KDVSMIHKLKADLSKSFDMKDLGPAKQILGMEITRDRQAKKLWLSQERYVERVLERFNMK 1086
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
AKS+S+PL NHF K M+ I YSSA GSLMY VCTR +IA+AVGV
Sbjct: 1087 EAKSVSSPLGNHFKLSRLSCPTTQVEKDKMAGIPYSSAVGSLMYAMVCTRPDIAHAVGVV 1146
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SR+LS + H +A+KWI +YLRGTSK+ L FG S+ +LEGFTD D+ G LD+ KS S Y
Sbjct: 1147 SRYLSNPGREHWEAVKWILKYLRGTSKLCLCFGGSEPILEGFTDADLAGDLDNRKSTSAY 1206
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
LF F+GG VSWQSKLQKC+ EA KE +W++RF+ ELG+KQ Y+V CD
Sbjct: 1207 LFTFSGGAVSWQSKLQKCVALSTTESEYLAANEAGKEMIWLQRFVQELGVKQGNYVVHCD 1266
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKV 331
SQSA+ LSKN+MYH RTKHI+ RYH + + + QL+KIHT++N DMLTKV
Sbjct: 1267 SQSAIHLSKNSMYHPRTKHIDHRYHWIRDAVSKKFFQLRKIHTNKNISDMLTKV 1320
Score = 303 bits (775), Expect(4) = 0.0
Identities = 170/438 (38%), Positives = 260/438 (59%), Gaps = 8/438 (1%)
Frame = -3
Query: 4229 WQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHHVAQ 4050
W+ MED LY KDL +P++G++AKP+ S W +++RKA+G IR+WVD SVFHHV+
Sbjct: 19 WKPRMEDI--LYCKDLHEPIVGEAAKPEGTSVPTWTKMNRKAIGYIREWVDDSVFHHVSN 76
Query: 4049 ETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTTIEI 3870
ET+ +W KL + +E+KTA KK F I++L N+K K+G + E L+++ +NQL T+++
Sbjct: 77 ETNARELWLKLTSLFEKKTAAKKAFLIKELVNMKYKDGVRVTEHLNNFQSTINQLATMDM 136
Query: 3869 NLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LV--K*RNKESQYGIRV 3696
+ DE+ + + +T VVTV NSAP+G ++ N K ++ + R K S
Sbjct: 137 KIDDELQALLLLGSLPDNWETFVVTVSNSAPDGVLSMDNVKNNMLNEETRRKSSSSD--- 193
Query: 3695 KSCLYCIK*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXXXXXXXX 3516
S ++ + R ++ +G +S + S++R KC+HCG GH+
Sbjct: 194 NSQVFVTEHRGRSKSRGPKGHGRSMSRSRTRFNGKCHHCGIFGHMKKNCNKLKKDPKEGR 253
Query: 3515 XXXEF-----VENNMSTVTYKEEIVSLICGHGD*NYVGDI-SVEWIVDTGATCHCVPKRE 3354
N ++V++ E +C G+ +V D SV W+VD+GA+ H P E
Sbjct: 254 DGNTHQPNDDTRNTAASVSHDE--CEFLCLEGECLHVDDCSSVAWVVDSGASFHATPHLE 311
Query: 3353 LFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNVL 3174
FTTY+ GDFG KMGN S I G+GDI ET+ L L+DVR + LR+NL++ VL
Sbjct: 312 YFTTYQGGDFGRVKMGNDGYSKISGIGDICFETDLGNKLMLKDVRYVPGLRLNLMSTGVL 371
Query: 3173 DKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNIL 2994
D++G+ D++ +L KGS+++A+ +CCT+YK + K +N V DD+SP+LWH L
Sbjct: 372 DRQGFHHHGGDQKWRLTKGSLVIARGKMCCTLYKTYGKICKGELN-VADDSSPSLWHKRL 430
Query: 2993 AHMSEKELQLLARQSLIP 2940
HMSEK LQ+LA++SLIP
Sbjct: 431 GHMSEKGLQVLAKKSLIP 448
Score = 286 bits (733), Expect(4) = 0.0
Identities = 157/330 (47%), Positives = 216/330 (65%), Gaps = 7/330 (2%)
Frame = -1
Query: 2347 YSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSRDIIF 2168
YSHL VFGCKAF HV KE RSKLD KA P IF+GYG EE GYRLW+PK KK+ RSRD++F
Sbjct: 646 YSHLRVFGCKAFAHVPKEQRSKLDDKAMPCIFLGYGNEEMGYRLWNPKTKKLFRSRDVVF 705
Query: 2167 HEHETIADFEK--LKEAPSVHVDYNDL-EQTTILPRRAIDDEI---AQETKHDIXXXXXX 2006
HE +TIADF+K ++ A + D + L E+ + + +++++ A+ +
Sbjct: 706 HEGQTIADFDKNEVEHADQLTYDSSPLQEEPSDKAQDMVNEDVPDMAEAEAAEPEDNDQG 765
Query: 2005 XXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGE 1826
+N Q V + ++ H + Y+LLT DGE
Sbjct: 766 EPNQGEQLENAQVPVRRSNREPKPNTKYHSSQYILVTSDGDDPYS-----RYILLTNDGE 820
Query: 1825 PKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKN-GDK 1649
P+ +++ ++ +D W+ A+K EM+SL KN+TYELVELP G++ LKNKW+FKLK++ ++
Sbjct: 821 PECFEEAKTHADCDKWMLAMKSEMESLLKNDTYELVELPKGRKALKNKWVFKLKRDENEQ 880
Query: 1648 LVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHG 1469
L K+KA LVVKGF ++GIDF++IFS V+KM SI ++LG+A S++LE+EQLDVKT FLHG
Sbjct: 881 LTKFKARLVVKGFGQKEGIDFDEIFSPVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHG 940
Query: 1468 D*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
D +EEIYM Q E F VEGK+H VCKLKK L
Sbjct: 941 DLEEEIYMEQPEGFEVEGKQHMVCKLKKSL 970
Score = 153 bits (387), Expect(4) = 0.0
Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 9/204 (4%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCIPAKRKKK-LDYN*SILMYVVPWR*SP*VAVSTLLHFL 2746
KG +++SCDY L K +VSF RK+ LD S + + +V +F+
Sbjct: 451 KGTSLDSCDYCLFGKQHKVSFTRTFTRKENVLDLVHSDVCGPMEVE-----SVGHNKYFV 505
Query: 2745 MMLHE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC 2575
+ + K+W++ L+ K QV Q F FHA+V+RET LKCI S+NGGEY S F YC
Sbjct: 506 TYIDDASRKVWVYLLKTKDQVFQTFKEFHAMVERETGRTLKCIRSDNGGEYTSNEFRDYC 565
Query: 2574 ----VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRS 2407
+KH T PGTPQHN VAER+N TI+E+VR +L+ A L K F G+AMT CYLINR+
Sbjct: 566 SKHGIKHVKTIPGTPQHNGVAERMNRTILEKVRSMLKTANLTKKFWGEAMTTACYLINRT 625
Query: 2406 QSIPLGFDILEKVWT*KN-PYTHI 2338
+PLG + E VWT ++ Y+H+
Sbjct: 626 PCVPLGLETPEGVWTGRSASYSHL 649
>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1314
Score = 364 bits (935), Expect(4) = 0.0
Identities = 185/353 (52%), Positives = 241/353 (68%), Gaps = 1/353 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKFD + H FK+T+ D CV++++ ++G IILLLYVDDMLI+G
Sbjct: 942 KKSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVFVKNYENGESIILLLYVDDMLIVG 1001
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D I LK LSKSF +KDLG ++ILGM II +R LW+SQ+ Y++++++RFN+
Sbjct: 1002 KDKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDRSKRMLWMSQEDYIKKVLERFNMH 1061
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
NAKS+ PL H + MS + YSSA GSLMY VCTR +IAYAVGV
Sbjct: 1062 NAKSVHVPLPGHLKLSKKQCPVNEEKE-EMSKVPYSSAVGSLMYAMVCTRPDIAYAVGVV 1120
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS K H A+KWI RYL+GT+K L FG +L G++D DM G +DS KS S Y
Sbjct: 1121 SRFLSNPGKEHWNAVKWILRYLKGTAKSCLCFGNGNLMLTGYSDADMAGDVDSRKSTSGY 1180
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L F GG +SWQS+LQKCI E CKE LWMK+FL ELG Q+ Y+++CD
Sbjct: 1181 LITFAGGAISWQSRLQKCIALSTTEAEFIAITEGCKEILWMKKFLQELGQDQESYVLYCD 1240
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
SQSA+ LSKN+ +H+R+KHI+VRYH + ++E + ++++KIHT N DM+TK
Sbjct: 1241 SQSAIHLSKNSTFHSRSKHIDVRYHWIRDVLESKMLKIEKIHTKDNGADMMTK 1293
Score = 254 bits (648), Expect(4) = 0.0
Identities = 152/439 (34%), Positives = 244/439 (55%), Gaps = 8/439 (1%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
+S W+ MMED HLY KDL++P+ S KP+ ++ +W L+RKA+ IRK++D S+F H
Sbjct: 9 FSYWKPMMED--HLYCKDLYEPITQQS-KPEGKTDKDWEILNRKAVAVIRKYIDRSLFEH 65
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V+ T+ +W KL + ++KT K R+L+ L+ +G+++ E L+ + L+NQL
Sbjct: 66 VSTYTNAYELWTKLESLIQKKTPRNKAHLYRRLAKLEYMDGQNMIEHLNTFKGLVNQLKK 125
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
EIN+ DEV + F DTL++T+ NSAP GK++ + L+ ++ + G+
Sbjct: 126 AEINIDDEVQTLMLFSSLPESWDTLIITLSNSAPEGKLSLDSVTDSLLNEESRRRERGLN 185
Query: 3698 VKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXXXXXXX 3519
+ I R ++ + GR KS+ SKSR + CY+CGK GH
Sbjct: 186 NQFEANVIDNRGRSKNREKGGRGKSQGRSKSRTRICCYYCGKPGHRKSECRFLKKDQQAG 245
Query: 3518 XXXXEFV------ENNMSTVTYKEEIVSLICGHGD*NYVGDISVE--WIVDTGATCHCVP 3363
+ + E+ +T +++ + G+ NY+ E WI+D+GA+ H P
Sbjct: 246 TVHPDQIDPRKKKEDGTTTAVTSDDVFLV----GEENYLNIAFDECIWIIDSGASFHVTP 301
Query: 3362 KRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAV 3183
E F++Y+ GDFG KMGNH S I+G+G+I + T L L++VR + D+R+NL++V
Sbjct: 302 HEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLMLKEVRHVPDMRLNLISV 361
Query: 3182 NVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWH 3003
+ LD+ G +Q + KL +GS++VA+ ++Y + K +N Q DAS LWH
Sbjct: 362 SKLDEAGMINQFSADRWKLSRGSMIVARGKKEGSLYTMQGKICKGDMNVAQ-DASKELWH 420
Query: 3002 NILAHMSEKELQLLARQSL 2946
L HMSEK L++LA+ L
Sbjct: 421 RRLGHMSEKGLEILAKDHL 439
Score = 244 bits (624), Expect(4) = 0.0
Identities = 139/328 (42%), Positives = 200/328 (60%), Gaps = 1/328 (0%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K+ Y HL VFGC+AF+H+ K+ R+KLD+K I++ +E G+RLWDP KK++RSR
Sbjct: 634 KKAYYGHLKVFGCRAFVHIPKDERTKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSR 693
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D+IF E +TI D +K E P +++ ++ + EI+Q
Sbjct: 694 DVIFFEDQTIQDIKK-PEKPK----QKEVQDSSPIVINNSGGEISQRIDEP--------- 739
Query: 1999 XXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPK 1820
++ Q + +Q + ++ + E +V S +Y+ LT +GEP+
Sbjct: 740 NQTEQPESEQSQTMQEEQME--TNQEEQEPEVRRSMRVRQPSKRYFSDDYVNLTDEGEPQ 797
Query: 1819 SYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLK-KNGDKLV 1643
S+ + +D + W++A+++E+ SLK+N TYELVELP G++ LKNKW+FKLK + +
Sbjct: 798 SFIEAIEMNDKEKWLQAMEEELQSLKENETYELVELPQGRKALKNKWVFKLKTEENNTKP 857
Query: 1642 KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD* 1463
+YKA +VVKG +KGIDF +IFS V+KM SI +LGLA L+LEIEQLDVKT FLHGD
Sbjct: 858 RYKARIVVKGCNQKKGIDFEEIFSPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDL 917
Query: 1462 QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
+EEIYM Q E F GKEH VC+LKK L
Sbjct: 918 EEEIYMEQPEGFAEPGKEHLVCRLKKSL 945
Score = 127 bits (318), Expect(4) = 0.0
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 10/202 (4%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCIP---AKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLH 2752
KG + SC+ L K RVSF P +RK LD S + ++ +
Sbjct: 443 KGQPLESCEDCLAGKQHRVSFRRPDDARRRKHILDLVHSDVCSTSER------SIGGAQY 496
Query: 2751 FLMMLHE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEA 2581
F+ + + K+W++ L+ K QVLQ F FHA+V+R T LKCI ++NGGEY+ FE
Sbjct: 497 FVTFIDDHSRKVWVYPLKTKDQVLQAFKEFHALVERATGRKLKCIRTDNGGEYLGP-FEY 555
Query: 2580 YC----VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLIN 2413
YC ++HE P TPQ N VAER+N TI E+VR +L AK+PK+F G+A+ LIN
Sbjct: 556 YCKTHGIRHEKVPPKTPQMNGVAERMNRTIAEKVRSMLSHAKIPKSFWGEAVLTAADLIN 615
Query: 2412 RSQSIPLGFDILEKVWT*KNPY 2347
S S PL +I E+VW+ K Y
Sbjct: 616 LSPSRPLNGEIPEEVWSGKKAY 637
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 385 bits (988), Expect(4) = 0.0
Identities = 194/353 (54%), Positives = 251/353 (71%), Gaps = 1/353 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
+KSLYGLKQA RQWYKKF+S + H +K+TT D CV+ + D FIILLLYVDDMLI+G
Sbjct: 958 RKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVG 1017
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
+ + I LK +LSK F +KDLGPA+QILGM I+ +R+ +LW+SQ+KY+E++++RFN++
Sbjct: 1018 RNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNME 1077
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
K++S PLANHF + M I Y+SA GSLMY VCTR +IA+AVGV
Sbjct: 1078 KTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVV 1137
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS K H A+KWI RYLRGTSK+ L FG+ VL G+TD DM G +DS KS S Y
Sbjct: 1138 SRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGY 1197
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L F+GG VSWQSKLQKC+ EACKE +WMK+FLTELG Q Y +FCD
Sbjct: 1198 LINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCD 1257
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
SQSA+ L+KN +H+R+KHI+VRY+ + ++E + ++L+KIHTD+N DMLTK
Sbjct: 1258 SQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTK 1310
Score = 248 bits (633), Expect(4) = 0.0
Identities = 141/332 (42%), Positives = 198/332 (59%), Gaps = 1/332 (0%)
Frame = -1
Query: 2371 GMDIKEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKV 2192
G DI Y L VFGCKA++HV K+ RSKLD K +FIGYG + GY+ +DP +KK+
Sbjct: 637 GRDIS---YDQLRVFGCKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKL 693
Query: 2191 MRSRDIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXX 2012
+RSRD++F E +TI D +K++++ ++ T++PR+ DD Q+ + +
Sbjct: 694 VRSRDVVFVEDQTIEDIDKVEKSTDDSAEFE--LPPTVVPRQVGDD--VQDNQPEAPGLP 749
Query: 2011 XXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKD 1832
+ D ++ + EY+LLT
Sbjct: 750 NEDELADTEGNEDNGDDDADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHEYVLLTDG 809
Query: 1831 GEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNG- 1655
GEP S+++ + WIEA++DE+ SL +N T+ELV+LP GKR LKNKW+FK+K +
Sbjct: 810 GEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEH 869
Query: 1654 DKLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFL 1475
+ L ++KA LVVKGF KGIDF++IFS V+KM SI VLGLA SLNLE+EQ+DVKT FL
Sbjct: 870 NSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFL 929
Query: 1474 HGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
HGD +EEIYM Q + F +GKE VC+L+K L
Sbjct: 930 HGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSL 961
Score = 221 bits (562), Expect(4) = 0.0
Identities = 136/443 (30%), Positives = 224/443 (50%), Gaps = 10/443 (2%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
Y +W+ M+D L+ + PV S KP+D S+++W + G IR++V+ +V++H
Sbjct: 16 YHLWRNKMKDL--LFVTKMHLPVFS-SQKPEDKSDEDWEFEHNQVCGYIRQFVEDNVYNH 72
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
++ T +W KL Y KT K+F + KL +K G ++A+ L++ +++QL+
Sbjct: 73 ISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSG 132
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*R-NKESQYGI 3702
+ I DEV + +TL V++ NSAPNG V K ++ + SQ
Sbjct: 133 MGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTS 192
Query: 3701 RVKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXXXXXX 3522
+S + + R ++ R KS+ S ++C++C K GHI
Sbjct: 193 SSQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRFCRQFQNDQKK 252
Query: 3521 XXXXXEFVENNMS---------TVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHC 3369
E + V Y ++I++L + W++D+GAT H
Sbjct: 253 NKGKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQE----------MTWVIDSGATIHA 302
Query: 3368 VPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLL 3189
P+RELF++Y GDFG KMGN + S ++G GD+ +ET L LRDVR + D+R+NL+
Sbjct: 303 TPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLI 362
Query: 3188 AVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNL 3009
+V+ LD+EGY + + Q KL KGS++VA+ +Y S IN ++D++ L
Sbjct: 363 SVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKL 422
Query: 3008 WHNILAHMSEKELQLLARQSLIP 2940
WH L HMSEK + L +++ +P
Sbjct: 423 WHRRLGHMSEKSMARLVKKNALP 445
Score = 123 bits (308), Expect(4) = 0.0
Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 9/191 (4%)
Frame = -2
Query: 2910 INSCDYYLLDKHRRVSF--CIPAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLHFLMML 2737
+ C L K RVSF P++R+ LD S + P++ S + +F+ +
Sbjct: 452 LKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVHSDVCG--PFKKS----LGGARYFVTFI 505
Query: 2736 HE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC--- 2575
+ K W++ L+ K QV QVF F +V+RET LKCI ++NGGEY + F+AYC
Sbjct: 506 DDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQ-FDAYCKEH 564
Query: 2574 -VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQSI 2398
++H+ T P TPQ N +AER+N T++ER RC+L +KLPKAF G+A+ Y++N S +
Sbjct: 565 GIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCV 624
Query: 2397 PLGFDILEKVW 2365
PL + EK+W
Sbjct: 625 PLQYKAPEKIW 635
>gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 1500
Score = 384 bits (987), Expect(4) = 0.0
Identities = 213/354 (60%), Positives = 246/354 (69%), Gaps = 1/354 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQALRQWYKKFDS + SHLFKRT D CVY RS + FIILLLYVDDMLI+G
Sbjct: 1051 KKSLYGLKQALRQWYKKFDSFMVSHLFKRTATDPCVYFRSFGNN-FIILLLYVDDMLIVG 1109
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D I +LK +LS+SFD+KDLGPA+QILGMDII +RK +LW+SQ+KYVERI+KRFN+Q
Sbjct: 1110 QDVELISKLKDDLSRSFDMKDLGPAKQILGMDIIRDRKAGKLWLSQEKYVERILKRFNMQ 1169
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSS-AGSLMYLTVCTRSNIAYAVGVE 853
+AKS+STPLANHF K M+ ILYSS GSLMYL VCTR +IA+AVGV
Sbjct: 1170 DAKSVSTPLANHFKLTKKSCPVSEKKKDEMAVILYSSVVGSLMYLMVCTRPDIAHAVGVM 1229
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS K H +A+KWIFRYLRGTSK+ LSF S+ +LEGFTD DM G LDS KS S Y
Sbjct: 1230 SRFLSNPGKVHWEAVKWIFRYLRGTSKMCLSFETSQTILEGFTDADMAGDLDSRKSTSGY 1289
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
+F F GG VS +C+ L L L + Q+
Sbjct: 1290 IFTFAGGAVS--------------------CSLSCRSVL--PCLLRRLNILQRL------ 1321
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKV 331
QSALDLSKNTMYH RTKHI+VRYH L ED+E+QLKKIHTD+N DMLTKV
Sbjct: 1322 KQSALDLSKNTMYHARTKHIDVRYHWLRMATEDKELQLKKIHTDKNVADMLTKV 1375
Score = 367 bits (942), Expect(4) = 0.0
Identities = 193/327 (59%), Positives = 232/327 (70%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K P Y+HL VFGCKAF+HV KE RSKLDSK TP IF+GYGGEEFGYR WDP+KK ++RSR
Sbjct: 753 KNPSYAHLKVFGCKAFLHVPKEQRSKLDSKVTPCIFVGYGGEEFGYRFWDPEKKNIVRSR 812
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D++FHEHETIADFEK ++ V D +DL TT+ PRRA D
Sbjct: 813 DVVFHEHETIADFEKKEKTSRVVHDDDDLTPTTVPPRRATDG------------------ 854
Query: 1999 XXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPK 1820
+ D VG +QG+ ++ E Q+ S E++LLT DGEP+
Sbjct: 855 -------GDEQDAVGIEQGEQPPLPENNEPQLRRSARGNIPSTKYPSSEFVLLTDDGEPE 907
Query: 1819 SYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGDKLVK 1640
S++D+QSTSD Q W+EA+++EMDSL+KN TYELVELP GKRPLKNKW+FKLKK+G+KLV+
Sbjct: 908 SFRDVQSTSDKQRWLEAMQEEMDSLQKNGTYELVELPKGKRPLKNKWVFKLKKDGNKLVR 967
Query: 1639 YKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD*Q 1460
YK LVVKGFA + IDF++IFS V+KM SI VVLGLA SLNLEIEQLDVKT FLHGD Q
Sbjct: 968 YKTCLVVKGFAQKACIDFDEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFLHGDLQ 1027
Query: 1459 EEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
EEIYM Q E F V+GKEH VC+LKK L
Sbjct: 1028 EEIYMDQPEGFKVKGKEHMVCRLKKSL 1054
Score = 52.0 bits (123), Expect(4) = 0.0
Identities = 24/37 (64%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = -2
Query: 2445 KAMTITCYLINRSQSIPLGFDILEKVWT*KNP-YTHI 2338
K + + CYLINRS S PLGFDI EKVW+ KNP Y H+
Sbjct: 724 KPVKVACYLINRSPSAPLGFDIPEKVWSDKNPSYAHL 760
Score = 34.3 bits (77), Expect(4) = 0.0
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -1
Query: 334 SNVIHKEKLDLCCSLAGMDALAKMSF 257
+ V+ +EKL+LC +LAGMD L K +F
Sbjct: 1373 TKVVPREKLELCSNLAGMDTLVKANF 1398
Score = 444 bits (1141), Expect = e-127
Identities = 233/425 (54%), Positives = 290/425 (68%), Gaps = 4/425 (0%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
Y+IW+ MMED HLY KDL+DP+LGDS KPKD S+D+W++LDRK+LGTIRKWVDI+VFH+
Sbjct: 297 YNIWKPMMED--HLYCKDLYDPILGDSGKPKDTSDDDWKKLDRKSLGTIRKWVDITVFHY 354
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
VAQE S W+KLAA YERK+ M K F RKLSN+K K G+S+AE LSDY ++LN L T
Sbjct: 355 VAQEKSAHAAWEKLAALYERKSPMNKAFGARKLSNMKYKEGQSMAEYLSDYQEMLNLLLT 414
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
++I+LG+EVN DTLVVTV NSAP+ KVT K L+ N+E++ R
Sbjct: 415 MKIDLGEEVNVLFLLGSMPESWDTLVVTVTNSAPDKKVTMKMAKDALL---NEEARRTNR 471
Query: 3698 VKSCLYCI----K*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXXX 3531
+ + R + G FRGRSKSKN SKSR+ +K
Sbjct: 472 ESGSNQALVTQNRGRSREKGQGFRGRSKSKNRSKSRDSVKLL------------------ 513
Query: 3530 XXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKREL 3351
+ ++CGHGD N+V D S+EWIVD A HCVPKREL
Sbjct: 514 ----------------------SLCVIVCGHGDCNHVADPSIEWIVDISAAYHCVPKREL 551
Query: 3350 FTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNVLD 3171
FTTYKAGDFG+T+MGN SVS I+G+GDIV++T+T CTLTL++VR I DLR+NLL++NVLD
Sbjct: 552 FTTYKAGDFGETRMGNKSVSQILGIGDIVVQTSTGCTLTLKNVRQIPDLRMNLLSINVLD 611
Query: 3170 KEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNILA 2991
KEGY+S+ KD Q KL GS+LVAK +LCCTMYK WLKH GN++NAV+DDASPNLWHN L
Sbjct: 612 KEGYESRQKDGQWKLFYGSLLVAKGSLCCTMYKTWLKHCGNNVNAVEDDASPNLWHNRLT 671
Query: 2990 HMSEK 2976
H+SEK
Sbjct: 672 HLSEK 676
Score = 82.4 bits (202), Expect(2) = 5e-16
Identities = 42/67 (62%), Positives = 50/67 (74%)
Frame = -2
Query: 531 LGLKQKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNT 352
+G K +E + SALDLSKNTMYH RTKHI+VRYH L ED+E+QLKKIHTD+N
Sbjct: 166 IGAKSRELSRY---MSALDLSKNTMYHARTKHIDVRYHWLRMATEDKELQLKKIHTDRNV 222
Query: 351 LDMLTKV 331
+ MLTKV
Sbjct: 223 VGMLTKV 229
Score = 34.3 bits (77), Expect(2) = 5e-16
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -1
Query: 334 SNVIHKEKLDLCCSLAGMDALAKMSF 257
+ V+ +EKL+LC +LAGMD L K +F
Sbjct: 227 TKVVPREKLELCSNLAGMDTLVKANF 252
>gb|KYP59064.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1300
Score = 310 bits (793), Expect(4) = 0.0
Identities = 168/368 (45%), Positives = 228/368 (61%), Gaps = 2/368 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWY+KFD+ + + R + D C Y++ D FIILLLYVDDMLI G
Sbjct: 930 KKSLYGLKQAPRQWYRKFDNFMLEIGYSRCSADHCCYVKRFGDS-FIILLLYVDDMLIAG 988
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
+ I RLK +LS+ FD+KDLG ARQILGM I +R +LW+SQ +Y+E+++ RF ++
Sbjct: 989 SNVMEINRLKDQLSRRFDMKDLGEARQILGMKITRDRNTGKLWLSQSEYIEKVLCRFKME 1048
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
AK + PL + F + M Y+SA GSLMY VCTR +IA+AVGV
Sbjct: 1049 AAKPVGVPLGSQFKLSNKDSPKDDSERERMRGTPYASAIGSLMYAMVCTRPDIAHAVGVV 1108
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGY-LDSIKSISR 676
SRF+S H +A+KWI RYLRGT L FG+ L GF D D G LD +S +
Sbjct: 1109 SRFMSNPGVMHWEAVKWILRYLRGTKDRVLMFGRGNLTLSGFVDADFAGSDLDKRRSTTG 1168
Query: 675 YLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFC 496
Y+F + G +SW SKLQK + EA KE +W++ FL ELG ++ ++
Sbjct: 1169 YVFTYGGTAISWISKLQKIVALSTTEAEYVAVTEAAKELVWLQNFLNELGRPREYVALYS 1228
Query: 495 DSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKVTSFIR 316
DSQSA+ L+KN +H+RTKHI V+YH + ++E + +QL+KI D+N DMLTK + +
Sbjct: 1229 DSQSAIHLAKNPAFHSRTKHIEVKYHFIRHLLEKKALQLEKIQGDKNPADMLTKAVT-LE 1287
Query: 315 KNLICVAA 292
K +C A+
Sbjct: 1288 KLKLCAAS 1295
Score = 194 bits (494), Expect(4) = 0.0
Identities = 121/334 (36%), Positives = 181/334 (54%), Gaps = 7/334 (2%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE S L FGC A+ VL + R+KLD+K+ FIGYG +EFGY+ WD +K++RSR
Sbjct: 619 KEVDLSFLRTFGCLAY--VLNDDRTKLDAKSIKCTFIGYGTDEFGYKFWDDLNRKIIRSR 676
Query: 2179 DIIFHE-------HETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIX 2021
+++F E E++ D + KE + + T +PR A +D + + +
Sbjct: 677 NVVFDEGMMYKDKKESLNDGKMEKEVVGLDIS------NTRIPRPADNDSVGVQMEET-- 728
Query: 2020 XXXXXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLL 1841
+ P F+ + S + + YLLL
Sbjct: 729 ------DQTEEESEPEPPPPFEFRATRETESRTPLALGRVTRKRRAPERYSPSLY-YLLL 781
Query: 1840 TKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKK 1661
T GEP+ Y + + W A+ DEM SLKKN+T+EL +LP GK+ L+N+W++++K+
Sbjct: 782 TDCGEPECYAEAVNDDHKSKWELAMDDEMCSLKKNDTWELCQLPQGKKALQNRWVYRVKE 841
Query: 1660 NGDKLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTT 1481
D +YKA LVVKGF GIDF +F+ V+K+ +I +VL + + NLE++Q+DVKT
Sbjct: 842 ESDGKKRYKARLVVKGFQQRYGIDFTDVFTPVVKITTIRLVLSMVAAENLELQQMDVKTA 901
Query: 1480 FLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
FLHGD +EEIYM Q E + +G + VC+LKK L
Sbjct: 902 FLHGDLEEEIYMVQPEGY--KGDDQQVCRLKKSL 933
Score = 191 bits (486), Expect(4) = 0.0
Identities = 129/433 (29%), Positives = 214/433 (49%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
+ W++ ME +LYGKDL P+ + KP+ +S++EW+ LDRKA+ I + +V +H
Sbjct: 15 FGFWRMQMEA--YLYGKDLHAPL---AEKPERMSDEEWKVLDRKAMSAIILSLSRNVAYH 69
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V S V + LA YE+ +AM K+ ++KL L+ + +S+A+ L+D++ L QL +
Sbjct: 70 VKGAKSTKEVLQTLADMYEKPSAMNKVMLMKKLFKLQMEERKSVADHLNDFNQLTTQLAS 129
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
+ I DEV I D +V +V S+ K+ N + ++ + +Q G
Sbjct: 130 VNIEFDDEVKALILLSSLPDSWDVVVTSVSTSSGKEKMKFDNIRDMMLNEETRRNQAGGS 189
Query: 3698 VKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXXXXXXX 3519
S L+ + FRGRSKSK +K ++ M C++C K GH+
Sbjct: 190 SGSALHTESRGRPDTRGKFRGRSKSKGRNKGKKEMVCWNCEKPGHMKSECRAPKKEK--- 246
Query: 3518 XXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKRELFTTY 3339
E + +E + +L+ V S +W++D+GA+ H +R++ Y
Sbjct: 247 -------EGRTANAAIEETVDALLLS------VSSSSDDWVMDSGASFHSCSRRDIMEPY 293
Query: 3338 KAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNVLDKEGY 3159
GDFG + ++ I+G GD+ I+ TLRDVR I L+ NL++V LD +G+
Sbjct: 294 TTGDFGMVYLADNKPLKIVGKGDVRIKYANGSCWTLRDVRHIPGLKRNLISVGQLDSDGF 353
Query: 3158 DSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNILAHMSE 2979
D + K+ KG++ +A+ T+Y S +I + +LWHN L HMSE
Sbjct: 354 HIMFGDGKWKVSKGAMTLARGLKSGTLY--MAGGSNPNIPFAGAVSQADLWHNRLGHMSE 411
Query: 2978 KELQLLARQSLIP 2940
K + +L +P
Sbjct: 412 KGMSVLKSIGRLP 424
Score = 126 bits (317), Expect(4) = 0.0
Identities = 70/198 (35%), Positives = 116/198 (58%), Gaps = 9/198 (4%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCIPAK--RKKKLDYN*SILMYVVPWR*SP*VAVSTLLHF 2749
K + + C++ +L K +RVSF + + KKL+ L++ W +P +++ ++
Sbjct: 427 KSVDVGLCEHCVLGKQKRVSFMTTGRTPKMKKLE-----LVHTDLWGPAPVISLGGSTYY 481
Query: 2748 LMMLHE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAY 2578
+ + + K+W+++L+ KS F + A+V+ ET L +KC+ S+NGGEY S + Y
Sbjct: 482 MTFVDDCTRKVWVYFLKRKSDAFDTFRRWRALVENETGLQVKCLRSDNGGEYNSEAIKEY 541
Query: 2577 C----VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINR 2410
C ++ + T PGTPQ N VAER+N T+ ER RC+ + LPK F +A++ +LINR
Sbjct: 542 CADRGIRMQKTIPGTPQQNGVAERMNRTLNERARCMRLKSGLPKMFWAEAVSTAAFLINR 601
Query: 2409 SQSIPLGFDILEKVWT*K 2356
S+PL I E+VW+ K
Sbjct: 602 GPSVPLNNRIPEEVWSGK 619
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 353 bits (906), Expect(4) = 0.0
Identities = 180/367 (49%), Positives = 245/367 (66%), Gaps = 1/367 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
+KSLYGLKQA RQWYKKF+S + +K+TT D CV+++ + FIILLLYVDD+LI+G
Sbjct: 901 RKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVG 960
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D + I RLK +LS+SF +KD+G A+QILG+ I+ +R+ +LW+SQ+ YV+R+++RF ++
Sbjct: 961 KDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQME 1020
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
NAK +STPLA HF K +M I Y+SA GSLMY VCTR +IA+ VG
Sbjct: 1021 NAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTV 1080
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRF+S + H A+KWI RYLRGT+ + L FG K L G+TD DM G +DS +S S Y
Sbjct: 1081 SRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDSRRSTSGY 1140
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
+ F GG V+WQS+LQKC+ EACKE LW+K+ L EL Q +Y++FCD
Sbjct: 1141 VIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQELSFVQDKYLLFCD 1200
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKVTSFIRK 313
SQSA+ L KN+ +H+R+KHI+VRYH + +E ++L K+HTD N DM+TK +
Sbjct: 1201 SQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLELAKVHTDDNCADMMTKSLPRSKS 1260
Query: 312 NLICVAA 292
C A
Sbjct: 1261 ETCCKIA 1267
Score = 189 bits (479), Expect(4) = 0.0
Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 1/328 (0%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K Y HL VFGCKA++H KK +RSR
Sbjct: 633 KNVKYDHLRVFGCKAYVH-----------------------------------KKAVRSR 657
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D+ F E +TI D +K ++ S + R + D + + +HD
Sbjct: 658 DVKFMEDQTIEDIDKTEKITSETDN-----------RLSNVDPVLSDEQHDDVDDQQLGD 706
Query: 1999 XXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPK 1820
D+++ + + D + + + Q+ +Y+ LT +GEP+
Sbjct: 707 AFDVPIDDSEEEHGMSQDEDLGDAPEPPQVQIRRYPSD----------DYVTLTDEGEPE 756
Query: 1819 SYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGDKLV- 1643
Y + + + + W++A++DEM SL N+T++LV+LP K+ L+N+WI+++K+ +
Sbjct: 757 CYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSP 816
Query: 1642 KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD* 1463
+YKA LVVKGF KGIDFN+IFS V+KM SI +VL LA +L+LE+EQ+DVKT FLHGD
Sbjct: 817 RYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDL 876
Query: 1462 QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
+EEIYM Q + F+VEGKE VC+L+K L
Sbjct: 877 EEEIYMKQPDGFLVEGKEDHVCRLRKSL 904
Score = 125 bits (314), Expect(4) = 0.0
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 7/202 (3%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCI--PAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLHF 2749
K + C + + K RVSF P+K+ + L+ S + P + + F
Sbjct: 442 KNAELEKCSHCMAGKQTRVSFKKHPPSKKSELLELVHSDVCG--PLKVKSFTGTIYFVTF 499
Query: 2748 LMMLHEKLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC-- 2575
+ KLW++ L+ K QVL F FH +V+R++ LKCI ++NGGEY F+AYC
Sbjct: 500 IDDCSRKLWVYALKTKDQVLAKFKEFHVLVERQSGKKLKCIRTDNGGEYCGP-FDAYCKQ 558
Query: 2574 --VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQS 2401
++HE T P TPQ N +AER+N T++ERVRC+L AKLPK F G+A+ ++IN S +
Sbjct: 559 HGIRHEKTPPKTPQLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPA 618
Query: 2400 IPLGFDILEKVWT*KN-PYTHI 2338
I L ++ +KVW KN Y H+
Sbjct: 619 IALNAEVPDKVWFGKNVKYDHL 640
Score = 104 bits (260), Expect(4) = 0.0
Identities = 83/322 (25%), Positives = 150/322 (46%), Gaps = 5/322 (1%)
Frame = -3
Query: 3893 NQLTTIEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKES 3714
+QL+ + I DEV +T V++ NS+P+G V+ N K ++ +
Sbjct: 148 DQLSQMGIKFDDEVLGLWLLNTLPDSWETFRVSITNSSPDGVVSLENVKSSVLNEEMRRK 207
Query: 3713 QYGIRVKSCLYCIK*RFKNMGHDFRG-RSKSKNWSKSR-ELMKCYHCGKIGHIXXXXXXX 3540
+G S + + R ++ + +G + S++ SKSR + ++C++C K GHI
Sbjct: 208 AHGTSSHSEVLFTENRGRSQKKELKGSKQNSRSKSKSRYKNVECHYCHKTGHIQRNCFLW 267
Query: 3539 XXXXXXXXXXXEFVENNMS---TVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHC 3369
+ ++ T ++ + ++ H N V D S+ WI+D+G T H
Sbjct: 268 KKENKDKKGKQKEKHHDNDDRVTTAISDDDLIILRDHDSVNLVSDESM-WIIDSGVTLH- 325
Query: 3368 VPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLL 3189
+IG+ D+ ++TN L LR V+ D+R NLL
Sbjct: 326 ---------------------------VIGIADVCLQTNMGMQLLLRGVKHAPDVRFNLL 358
Query: 3188 AVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNL 3009
+V +LD G+++ + KL +G+++VAK + +Y + + +NA+ DAS L
Sbjct: 359 SVQMLDDSGFENHFGLGKWKLSRGNLIVAKGDRISKLYWTKALVAKDSVNAMDMDAS--L 416
Query: 3008 WHNILAHMSEKELQLLARQSLI 2943
WH L+H+SEK L LA++ ++
Sbjct: 417 WHRRLSHISEKGLNCLAKKDVL 438
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
Length = 1328
Score = 277 bits (708), Expect(3) = e-173
Identities = 165/339 (48%), Positives = 212/339 (62%), Gaps = 12/339 (3%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE YSHL VFGC+AF HV KE R+KLD K+ P IFIGYG EEFGYRLWDP KKKV+RSR
Sbjct: 641 KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 700
Query: 2179 DIIFHEHE--TIADF-EKLKEA--------PSVHVDYNDLEQTTILPRRAIDDEIAQETK 2033
D++F E E T AD EK+K PS + E TT DE++++ +
Sbjct: 701 DVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTT--------DEVSEQGE 752
Query: 2032 HDIXXXXXXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFE 1853
Q D G ++ + + + + S E
Sbjct: 753 QP----------GEVIEQGEQLDE-GVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTE 801
Query: 1852 YLLLTKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIF 1673
Y+L++ D EP+S +++ S + ++A+++EM+SL+KN TY+LVELP GKRPLK KW+F
Sbjct: 802 YVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVF 861
Query: 1672 KLKKNGD-KLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQL 1496
KLKK+GD KLV+YKA LVVKGF +KGIDF++IFS V+KM SI +L LA SL+LE+EQL
Sbjct: 862 KLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQL 921
Query: 1495 DVKTTFLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
DVKT FLHGD +EEIYM Q E F V GK+H VCKL K L
Sbjct: 922 DVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960
Score = 212 bits (539), Expect(3) = e-173
Identities = 138/438 (31%), Positives = 216/438 (49%), Gaps = 3/438 (0%)
Frame = -3
Query: 4247 DEVYSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISV 4068
D +S WQ M D L + L + DS KP + ++W LD +A IR + V
Sbjct: 14 DNGFSTWQRRMRDL--LIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDV 71
Query: 4067 FHHVAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQ 3888
+++ E + +W +L + Y KT K++ ++L L G + L+ ++ L+ Q
Sbjct: 72 VNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQ 131
Query: 3887 LTTIEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*L-VK*RNKESQ 3711
L + + + +E + D L T+++ ++ + L K R K
Sbjct: 132 LANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPEN 191
Query: 3710 YG--IRVKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXX 3537
G + + + N G R KSKN SKSR + CY+C + GH
Sbjct: 192 QGQALITEGRGRSYQRSSNNYGRS-GARGKSKNRSKSR-VRNCYNCNQPGHFKRDCPNPR 249
Query: 3536 XXXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKR 3357
+N + V + +V I + ++ EW+VDT A+ H P R
Sbjct: 250 KGKGETSGQKN-DDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVR 308
Query: 3356 ELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNV 3177
+LF Y AGDFG KMGN S S I G+GDI I+TN CTL L+DVR + DLR+NL++
Sbjct: 309 DLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIA 368
Query: 3176 LDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNI 2997
LD++GY+S +++ +L KGS+++AK T+Y+ + +NA QD+ S +LWH
Sbjct: 369 LDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKR 428
Query: 2996 LAHMSEKELQLLARQSLI 2943
+ HMSEK LQ+LA++SLI
Sbjct: 429 MGHMSEKGLQILAKKSLI 446
Score = 174 bits (442), Expect(3) = e-173
Identities = 105/218 (48%), Positives = 132/218 (60%), Gaps = 8/218 (3%)
Frame = -2
Query: 2967 IIGKTISYSYFLN*GKGMTINSCDYYLLDKHRRVSFCIPAKRKKKLDYN*SILMY---VV 2797
I+ K SY KG T+ CDY L K RVSF ++RK N L+Y
Sbjct: 439 ILAKKSLISY----AKGTTVKPCDYCLFGKQHRVSFQTSSERK----LNILDLVYSDVCG 490
Query: 2796 PWR*SP*VAVSTLLHFLMMLHEKLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSN 2617
P + F+ KLW++ L+ K QV QVF FHA+V+RET LK + S+
Sbjct: 491 PMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSD 550
Query: 2616 NGGEYISRVFEAYC----VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF* 2449
NGGEY SR FE YC ++HE T PGTPQHN VAER+N TIVE+VR +LRMAKLPK+F
Sbjct: 551 NGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFW 610
Query: 2448 GKAMTITCYLINRSQSIPLGFDILEKVWT*KN-PYTHI 2338
G+A+ CYLINRS S+PL F+I E+VWT K Y+H+
Sbjct: 611 GEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHL 648
Score = 399 bits (1025), Expect = e-112
Identities = 204/363 (56%), Positives = 259/363 (71%), Gaps = 1/363 (0%)
Frame = -2
Query: 1416 EKNTVCVS*KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLL 1237
+K+ VC KSLYGLKQA RQWY KFDS + S + +T D CVY + + FIILLL
Sbjct: 949 KKHMVCKL-NKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007
Query: 1236 YVDDMLIIGHDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVE 1057
YVDDMLI+G D I +LKG+LSKSFD+KDLGPA+QILGM I+ ER +LW+SQ+KY+E
Sbjct: 1008 YVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIE 1067
Query: 1056 RIVKRFNIQNAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRS 880
R+++RFN++NAK +STPLA H K NM+ + YSSA GSLMY VCTR
Sbjct: 1068 RVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRP 1127
Query: 879 NIAYAVGVESRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYL 700
+IA+AVGV SRFL K H +A+KWI RYLRGT+ L FG S +L+G+TD DM G +
Sbjct: 1128 DIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDI 1187
Query: 699 DSIKSISRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLK 520
D+ KS + YLF F+GG +SWQSKLQKC+ E KE +W+KRFL ELGL
Sbjct: 1188 DNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH 1247
Query: 519 QKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDML 340
QKEY+V+CDSQSA+DLSKN+MYH RTKHI+VRYH + +++DE +++ KI T++N DML
Sbjct: 1248 QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADML 1307
Query: 339 TKV 331
TKV
Sbjct: 1308 TKV 1310
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 282 bits (721), Expect(3) = e-172
Identities = 171/375 (45%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE YSHL VFGCKAF HV KE R+KLD K+ P IFIGYG EEFGYRLWD KKKV+RSR
Sbjct: 642 KEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSR 701
Query: 2179 DIIFHEHE--TIADF-EKLKEAPSVHVDYNDLEQTTILPRRA---IDDEIAQETKHDIXX 2018
D+IF E E T AD EK K+ + + + ++ P A ID+ + QE
Sbjct: 702 DVIFRESEVGTAADLSEKAKKKNGIIPNLVTIPSSSNHPTSAESTIDEVVEQEE------ 755
Query: 2017 XXXXXXXXXXXXDNTQPDVV---GFKQGD*SSSFDHMETQ----VXXXXXXXXXXXXXXS 1859
QPD + G + GD + ++ E + + S
Sbjct: 756 ---------------QPDEIVEQGEQLGDNTEQMEYPEEEQSQPLRRSERQRVESTKYPS 800
Query: 1858 FEYLLLTKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKW 1679
EY+L+ +GEP++ +++ S + W++A+ +EM SL+KN TY+LVELP GKRPLK KW
Sbjct: 801 SEYVLIKYEGEPENLKEVLSHPEKSQWMKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKW 860
Query: 1678 IFKLKKNGD-KLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIE 1502
+FKLKK+G+ KLV+YKA LVVKGF +KGIDF++IFS V+KM SI +L +A SL+LE+E
Sbjct: 861 VFKLKKDGNGKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSIAASLDLEVE 920
Query: 1501 QLDVKTTFLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKLVWFETSSKTMV*EI*FLHN 1322
QLDVKT FLHGD +EEIYM Q E F V GK+H VCKL K L + + + +
Sbjct: 921 QLDVKTAFLHGDLEEEIYMEQGEGFEVSGKKHMVCKLNKSLYGLKQAPRQWYKKFDSFMK 980
Query: 1321 KSSLQENYSRYMCLY 1277
+ + YS + C+Y
Sbjct: 981 SQTYRNTYS-HPCVY 994
Score = 209 bits (531), Expect(3) = e-172
Identities = 134/437 (30%), Positives = 221/437 (50%), Gaps = 4/437 (0%)
Frame = -3
Query: 4241 VYSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFH 4062
V+S+WQ M+D L + L + G S KP+ + ++W LD KA IR + V +
Sbjct: 17 VFSMWQRRMKDL--LIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAIRLHLTDDVVN 74
Query: 4061 HVAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLT 3882
++ E S +W KL Y KT K++ ++L L G + L+ + L+ QL
Sbjct: 75 NIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLA 134
Query: 3881 TIEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*L-VK*RNKESQYG 3705
+ + + +E + DTL T+++ + ++ + L K R K +G
Sbjct: 135 NLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKMRKKPENHG 194
Query: 3704 --IRVKSCLYCIK*RFKNMGHD-FRGRSKSKNWSKSRELMKCYHCGKIGHIXXXXXXXXX 3534
+S + N G RG+SK ++ SK+R CY+C + GH
Sbjct: 195 QVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARN---CYNCDQPGHFKRDCPNPKR 251
Query: 3533 XXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKRE 3354
+N + V +++V LI + ++ EW+VDT A+ H P R+
Sbjct: 252 GKGESSGQKND-DNTAAMVQNNDDVVLLINEEEECMHLAGTESEWVVDTAASYHATPVRD 310
Query: 3353 LFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNVL 3174
LF Y AGD+G+ KMGN S S I G+GDI +TN CTL L+DVR + DLR+NL++ L
Sbjct: 311 LFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRMNLISGIAL 370
Query: 3173 DKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNIL 2994
D++GY++ +++ +L KG++++AK T+Y+ + +NA ++ S +LWH +
Sbjct: 371 DQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAEICQGELNAAHEENSADLWHKRM 430
Query: 2993 AHMSEKELQLLARQSLI 2943
H SEK LQ+L+++SLI
Sbjct: 431 GHTSEKGLQILSKKSLI 447
Score = 169 bits (428), Expect(3) = e-172
Identities = 98/203 (48%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCIPAKRKKKLDYN*SILMY---VVPWR*SP*VAVSTLLH 2752
KG TI C+Y+L K RVSF ++RK + L+Y P +
Sbjct: 451 KGTTIKPCNYWLFGKQHRVSFQTSSERKSNI----LDLVYSDVCGPMEIESMGGNKYFVT 506
Query: 2751 FLMMLHEKLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC- 2575
F+ KLW++ + K QV QVF FHA+V+RET K + ++NGGEY SR FE YC
Sbjct: 507 FIDDASRKLWVYIFRAKDQVFQVFQKFHALVERETGRKRKRLRTDNGGEYTSREFEEYCS 566
Query: 2574 ---VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQ 2404
++HE T PGTPQHN VAER+N TIVE+VR +LRMAKLPK F G+A+ CYLINRS
Sbjct: 567 NHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKTFWGEAVRTACYLINRSP 626
Query: 2403 SIPLGFDILEKVWT*KN-PYTHI 2338
S+PL FDI E+VWT K Y+H+
Sbjct: 627 SVPLEFDIPERVWTNKEMSYSHL 649
Score = 337 bits (863), Expect = 2e-91
Identities = 183/364 (50%), Positives = 241/364 (66%), Gaps = 2/364 (0%)
Frame = -2
Query: 1416 EKNTVCVS*KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLL 1237
+K+ VC KSLYGLKQA RQWYKKFDS + S ++ T CVY + D FIILLL
Sbjct: 950 KKHMVCKL-NKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFIILLL 1008
Query: 1236 YVDDMLIIGHDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVE 1057
Y D MLI+G D I +L+ + SKSFD+KDLGPA+QILGM I E + +L +S +KY+E
Sbjct: 1009 YTDYMLIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIAREEQ-KKLGLSHEKYIE 1067
Query: 1056 RIVKRFNIQNAKSISTPLANHFXXXXXXXXXXXXXKY-NMSCILYSSA-GSLMYLTVCTR 883
R+++RFN+++AK ISTPL ++ + +M+ + YSSA GS MY VCTR
Sbjct: 1068 RVLERFNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYSSAVGSFMYAMVCTR 1127
Query: 882 SNIAYAVGVESRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGY 703
NI AV V SRFL K H +A+KWI RYLR T++ Y F S + +G+T++DM G
Sbjct: 1128 PNIV-AVCVVSRFLEIPGKEHLEAVKWILRYLRRTTRDYFCFEGSDPISKGYTNVDMEGD 1186
Query: 702 LDSIKSISRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGL 523
LD+ KS + YLF F+GG +SWQSKLQK + E CKE LW+KRFL E GL
Sbjct: 1187 LDNRKSTTCYLFTFSGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGL 1246
Query: 522 KQKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDM 343
QKEY+V+C+SQSA+DLSK MYH TKHI++RYH + +++D +Q+ KI T +N DM
Sbjct: 1247 HQKEYVVYCESQSAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVKIPTSENPADM 1306
Query: 342 LTKV 331
+TKV
Sbjct: 1307 VTKV 1310
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 318 bits (816), Expect(4) = e-170
Identities = 166/356 (46%), Positives = 226/356 (63%), Gaps = 4/356 (1%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKFDS + + R+ D C+Y + DG FI LLLYVDDMLI
Sbjct: 658 KKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIAS 717
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D + I +LK +L+ F++K+LG A++ILGM+I +R++ +L++SQ KY+ER++ RFN+
Sbjct: 718 RDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMN 777
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
N K +STPLA HF MS + Y+SA GSLMY VCTR ++AYAV +
Sbjct: 778 NCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMV 837
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAV---LEGFTDLDMVGYLDSIKSI 682
SR++ K H A+KWIFRYL+GTS I L F ++KA + GF D D G LD +S+
Sbjct: 838 SRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSL 897
Query: 681 SRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMV 502
S Y+F +SW++ LQ E KE LW++ + ELGL Q V
Sbjct: 898 SGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTV 957
Query: 501 FCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
FCDSQSA+ L+KN+ YH +TKHI+V++H + I+ E+ L+K+HT +N DMLTK
Sbjct: 958 FCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTK 1013
Score = 182 bits (463), Expect(4) = e-170
Identities = 119/334 (35%), Positives = 176/334 (52%), Gaps = 11/334 (3%)
Frame = -1
Query: 2347 YSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLW--DPKKKKVMRSRDI 2174
YS+L +FGC A+ HV KL +A IF+GY E GYRLW + K ++++ SRD+
Sbjct: 347 YSNLRIFGCPAYAHVND---GKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDV 403
Query: 2173 IFHEHETIADFEKLKEAPSVHVDYN------DLEQTTILPRRAIDDEIAQETKHDIXXXX 2012
F+E ++ ++ + S + +LE ++ P + E+ D
Sbjct: 404 TFNEDALLSSGKQSSVSSSSTNNLQGTSEKVELELKSVAPNVDVPSSSTTESSID----- 458
Query: 2011 XXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLL-LTK 1835
+ D +Q + + + D Q+ + +
Sbjct: 459 -----------DHGDDHPIQQQEEYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVND 507
Query: 1834 DGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKN- 1658
D EP SY + S D+ W+ A+ +E++SL KNNT+ L +LP GKRPL+ KWI+K K
Sbjct: 508 DVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGI 567
Query: 1657 -GDKLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTT 1481
G + + KA LVVKGF ++GIDFN+IFS V++ SI ++L +LE+EQLDVKT
Sbjct: 568 PGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTA 627
Query: 1480 FLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
FLHG+ +EEIYM Q E F+V KEH VC+LKK L
Sbjct: 628 FLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSL 661
Score = 94.4 bits (233), Expect(4) = e-170
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Frame = -2
Query: 2901 CDYYLLDKHRRVSFCIPAKRKK-KLDYN*SILMYVVPWR*SP*VAVSTLLHFLMMLHE-- 2731
C++ + K +RVSF R K LDY S L W S + + + ++ +
Sbjct: 157 CEHCVFGKQKRVSFSTATHRTKGTLDYIHSDL-----WGPSKVPSYGGCRYMMTIIDDFS 211
Query: 2730 -KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYCVKHEL-- 2560
K+W+++L++K++ F + +V+ +T +K + ++NG E+ F +C H +
Sbjct: 212 RKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIAR 271
Query: 2559 --TEPGTPQHNEVAERINCTIVERVRCILRMAKL--PKAF*GKAMTITCYLINRSQSIPL 2392
T PG PQ N VAER+N TI+ER RC+L A L + +A + CYLINRS L
Sbjct: 272 HKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSL 331
Query: 2391 GFDILEKVWT 2362
F I E++W+
Sbjct: 332 NFKIPEEIWS 341
Score = 78.2 bits (191), Expect(4) = e-170
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Frame = -3
Query: 3365 PKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLA 3186
P ++LFTT + D G MGN + I G+G I I+T+ TL +VR I DL+ NL++
Sbjct: 3 PYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLIS 62
Query: 3185 VNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIW---LKHSGNHINAVQDDASP 3015
+ L+ G + K+ KG++++ K N ++Y + + S +++ D +
Sbjct: 63 LGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDAT 122
Query: 3014 NLWHNILAHMSEKELQLLARQSLI 2943
LWH L HMSEK + LL++Q L+
Sbjct: 123 KLWHMRLGHMSEKGMHLLSKQGLL 146
>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 250 bits (638), Expect(3) = e-162
Identities = 151/438 (34%), Positives = 234/438 (53%), Gaps = 6/438 (1%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
YS W+ MMED HLY KDL +P++ K + S+ +W L+RKA+ IRK++D S+F H
Sbjct: 19 YSYWKPMMED--HLYCKDLHEPIIYKE-KVEGKSDAQWELLNRKAVAMIRKYIDKSLFEH 75
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V+ T+ +W KL + ++KT K +R+L L+ K+G S+ E L+++ L+NQLT
Sbjct: 76 VSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMIEHLNNFKGLVNQLTK 135
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
IE+ + DE+ + DTLVVT+ NSAP GK+T L+ ++ + G
Sbjct: 136 IEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSDSLLGEESRRMERGES 195
Query: 3698 VKSCLYCIK*RFKNMGHDFRGRSKSKNW------SKSRELMKCYHCGKIGHIXXXXXXXX 3537
+ I+ R KN + RGRSKS++ SKSR + CY+CG++GH
Sbjct: 196 IHPEANIIENRGKN---ETRGRSKSRDQYQSRGRSKSRSKITCYYCGRMGHRKMECRSFK 252
Query: 3536 XXXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKR 3357
E N+ + Y + WIVD+GA+ H P
Sbjct: 253 RDQKAEDMLYIIREGNILNIAYDDS-------------------SWIVDSGASFHVTPHG 293
Query: 3356 ELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNV 3177
F++Y++GDFG +MGN S I+G+GDI++ T+T C L L+DVR + +R+NL++
Sbjct: 294 SFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMRLNLISAGK 353
Query: 3176 LDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNI 2997
LD G + + + KL KGS+++A+ ++Y + K +N DD +WH
Sbjct: 354 LDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDI--EVWHKR 411
Query: 2996 LAHMSEKELQLLARQSLI 2943
L H+SEK L +LAR+ L+
Sbjct: 412 LGHISEKGLHILARKQLL 429
Score = 245 bits (625), Expect(3) = e-162
Identities = 143/328 (43%), Positives = 198/328 (60%), Gaps = 1/328 (0%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K Y+HL VFGC+AF+H+ K+ R+KLD+K I++ +EFGYRLWDP KKV+RSR
Sbjct: 624 KRASYNHLKVFGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSR 683
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D++F E +TI D K E P + + T + P + ++E Q+ +
Sbjct: 684 DVVFFEDQTIEDI-KNSEKPRLR------KSTELTPVQHENNETHQDNDPEEDEPVLEQS 736
Query: 1999 XXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPK 1820
+ Q D SSS E + EY++LT +GEP+
Sbjct: 737 NQETHDEPAQEDPQ-------SSSLPAPEPRRSSRERRPSTWYNTE--EYVMLTDEGEPQ 787
Query: 1819 SYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLK-KNGDKLV 1643
SY++ + W +A+++EM SL +N+TYELVELP G+R LKNKW++++K ++ +
Sbjct: 788 SYKEAIKDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKP 847
Query: 1642 KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD* 1463
+YKA LVVKGF EKGIDF +IFS V+KM SI V+LG+A + +LEIEQLDVKT FLHGD
Sbjct: 848 RYKARLVVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDL 907
Query: 1462 QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
+EEIYM Q E F V GKE+ VC+L K L
Sbjct: 908 EEEIYMEQPEGFKVPGKENLVCRLTKSL 935
Score = 132 bits (333), Expect(3) = e-162
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 11/206 (5%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSF---CIPAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLH 2752
KG +++ C + L K RV+F P +RK LD L++ S ++ L+
Sbjct: 433 KGKSLDPCAHCLAGKQHRVAFQRSSPPVRRKNILD-----LVHTDVCSMSE-KSIGGALY 486
Query: 2751 FLMMLHE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEA 2581
F+ + + K+W+ L++K QVL F FHA+V+RET +KC+ S+NGGEY FE
Sbjct: 487 FVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERETGRKIKCVRSDNGGEYRGP-FET 545
Query: 2580 YCVKH----ELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLIN 2413
YC KH E T P TPQ N +AER+N TI ERVRC+L AKLPK F G+A+ ++N
Sbjct: 546 YCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCVLSHAKLPKLFWGEAIMAVVDIVN 605
Query: 2412 RSQSIPLGFDILEKVWT*KN-PYTHI 2338
+ S+PLG I ++VWT K Y H+
Sbjct: 606 LTPSVPLGGAIPDEVWTGKRASYNHL 631
Score = 376 bits (965), Expect = e-105
Identities = 193/363 (53%), Positives = 247/363 (68%), Gaps = 1/363 (0%)
Frame = -2
Query: 1416 EKNTVCVS*KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLL 1237
++N VC KSLYGLKQA RQWYKKF+S + H FK+T D CV+I+ G F+ILLL
Sbjct: 924 KENLVCRL-TKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLL 982
Query: 1236 YVDDMLIIGHDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVE 1057
YVDDMLI G D I LK +LSKSF +KDLGPA+QILGM I +R LW+SQ++Y+E
Sbjct: 983 YVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIE 1042
Query: 1056 RIVKRFNIQNAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRS 880
+++++FN+ K ++TPLA HF M I YSS GSLMY +CTR
Sbjct: 1043 KVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRP 1102
Query: 879 NIAYAVGVESRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYL 700
+IAYAVGV SRFL+ H A+KWI RYLRGTSK L FGK K VL+G+TD D+ G +
Sbjct: 1103 DIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDI 1162
Query: 699 DSIKSISRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLK 520
DS KS S YL F GG VSWQSKLQKC+ EACKE LWMK L ELG++
Sbjct: 1163 DSRKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVE 1222
Query: 519 QKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDML 340
Q+ Y+V CD+QSA+ L+KN+ +H+RTKHI+ RYH + ++E++++ L K+HTD+N DM+
Sbjct: 1223 QERYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMM 1282
Query: 339 TKV 331
TKV
Sbjct: 1283 TKV 1285
>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 250 bits (638), Expect(3) = e-162
Identities = 151/438 (34%), Positives = 234/438 (53%), Gaps = 6/438 (1%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
YS W+ MMED HLY KDL +P++ K + S+ +W L+RKA+ IRK++D S+F H
Sbjct: 19 YSYWKPMMED--HLYCKDLHEPIIYKE-KVEGKSDAQWELLNRKAVAMIRKYIDKSLFEH 75
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V+ T+ +W KL + ++KT K +R+L L+ K+G S+ E L+++ L+NQLT
Sbjct: 76 VSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMIEHLNNFKGLVNQLTK 135
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
IE+ + DE+ + DTLVVT+ NSAP GK+T L+ ++ + G
Sbjct: 136 IEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSDSLLGEESRRMERGES 195
Query: 3698 VKSCLYCIK*RFKNMGHDFRGRSKSKNW------SKSRELMKCYHCGKIGHIXXXXXXXX 3537
+ I+ R KN + RGRSKS++ SKSR + CY+CG++GH
Sbjct: 196 IHPEANIIENRGKN---ETRGRSKSRDQYQSRGRSKSRSKITCYYCGRMGHRKMECRSFK 252
Query: 3536 XXXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVPKR 3357
E N+ + Y + WIVD+GA+ H P
Sbjct: 253 RDQKAEDMLYIIREGNILNIAYDDS-------------------SWIVDSGASFHVTPHG 293
Query: 3356 ELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNV 3177
F++Y++GDFG +MGN S I+G+GDI++ T+T C L L+DVR + +R+NL++
Sbjct: 294 SFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTTSTGCRLVLKDVRHVPAMRLNLISAGK 353
Query: 3176 LDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNI 2997
LD G + + + KL KGS+++A+ ++Y + K +N DD +WH
Sbjct: 354 LDDAGLMNYFGEGKWKLTKGSLVMARGKKEGSLYVMQAKLCKGEVNITTDDL--EVWHKR 411
Query: 2996 LAHMSEKELQLLARQSLI 2943
L H+SEK L +LAR+ L+
Sbjct: 412 LGHISEKGLHILARKQLL 429
Score = 245 bits (625), Expect(3) = e-162
Identities = 143/328 (43%), Positives = 198/328 (60%), Gaps = 1/328 (0%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K Y+HL VFGC+AF+H+ K+ R+KLD+K I++ +EFGYRLWDP KKV+RSR
Sbjct: 624 KRASYNHLKVFGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSR 683
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D++F E +TI D K E P + + T + P + ++E Q+ +
Sbjct: 684 DVVFFEDQTIEDI-KNSEKPRLR------KSTELTPVQHENNETHQDNDPEEDEPVLEQS 736
Query: 1999 XXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPK 1820
+ Q D SSS E + EY++LT +GEP+
Sbjct: 737 NQETHDEPAQEDPQ-------SSSLPAPEPRRSSRERRPSTWYNTE--EYVMLTDEGEPQ 787
Query: 1819 SYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLK-KNGDKLV 1643
SY++ + W +A+++EM SL +N+TYELVELP G+R LKNKW++++K ++ +
Sbjct: 788 SYKEAIKDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKP 847
Query: 1642 KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD* 1463
+YKA LVVKGF EKGIDF +IFS V+KM SI V+LG+A + +LEIEQLDVKT FLHGD
Sbjct: 848 RYKARLVVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDL 907
Query: 1462 QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
+EEIYM Q E F V GKE+ VC+L K L
Sbjct: 908 EEEIYMEQPEGFKVPGKENLVCRLTKSL 935
Score = 132 bits (333), Expect(3) = e-162
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 11/206 (5%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSF---CIPAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLH 2752
KG +++ C + L K RV+F P +RK LD L++ S ++ L+
Sbjct: 433 KGKSLDPCAHCLAGKQHRVAFQRSSPPVRRKNILD-----LVHTDVCSMSE-KSIGGALY 486
Query: 2751 FLMMLHE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEA 2581
F+ + + K+W+ L++K QVL F FHA+V+RET +KC+ S+NGGEY FE
Sbjct: 487 FVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERETGRKIKCVRSDNGGEYRGP-FET 545
Query: 2580 YCVKH----ELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLIN 2413
YC KH E T P TPQ N +AER+N TI ERVRC+L AKLPK F G+A+ ++N
Sbjct: 546 YCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCVLSHAKLPKLFWGEAIMAVVDIVN 605
Query: 2412 RSQSIPLGFDILEKVWT*KN-PYTHI 2338
+ S+PLG I ++VWT K Y H+
Sbjct: 606 LTPSVPLGGAIPDEVWTGKRASYNHL 631
Score = 376 bits (965), Expect = e-105
Identities = 193/363 (53%), Positives = 247/363 (68%), Gaps = 1/363 (0%)
Frame = -2
Query: 1416 EKNTVCVS*KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLL 1237
++N VC KSLYGLKQA RQWYKKF+S + H FK+T D CV+I+ G F+ILLL
Sbjct: 924 KENLVCRL-TKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLL 982
Query: 1236 YVDDMLIIGHDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVE 1057
YVDDMLI G D I LK +LSKSF +KDLGPA+QILGM I +R LW+SQ++Y+E
Sbjct: 983 YVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIE 1042
Query: 1056 RIVKRFNIQNAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRS 880
+++++FN+ K ++TPLA HF M I YSS GSLMY +CTR
Sbjct: 1043 KVLEQFNMDKCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRP 1102
Query: 879 NIAYAVGVESRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYL 700
+IAYAVGV SRFL+ H A+KWI RYLRGTSK L FGK K VL+G+TD D+ G +
Sbjct: 1103 DIAYAVGVVSRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDI 1162
Query: 699 DSIKSISRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLK 520
DS KS S YL F GG VSWQSKLQKC+ EACKE LWMK L ELG++
Sbjct: 1163 DSRKSTSGYLTTFAGGAVSWQSKLQKCVALSTTEAEYIAATEACKEMLWMKNMLLELGVE 1222
Query: 519 QKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDML 340
Q+ Y+V CD+QSA+ L+KN+ +H+RTKHI+ RYH + ++E++++ L K+HTD+N DM+
Sbjct: 1223 QERYVVKCDNQSAIYLAKNSKFHSRTKHIDTRYHWIREVLEEKKLHLDKVHTDENWSDMM 1282
Query: 339 TKV 331
TKV
Sbjct: 1283 TKV 1285
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 335 bits (859), Expect(2) = e-158
Identities = 178/353 (50%), Positives = 228/353 (64%), Gaps = 1/353 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKF S ++ H +K+T+ D CV++ D F+ILLLYVDDMLI+G
Sbjct: 955 KKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVG 1014
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
+ + IQ LK ELSKSF +KD+GPA+QILGM II +R+ +LW+SQ+KY+E++++RF++
Sbjct: 1015 RNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMN 1074
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
AK +STPL HF K M + YSSA GSLMY VCTR +IA+AVGV
Sbjct: 1075 EAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVV 1134
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS + H A+KWI RYLRGTS + L FG K +L G+TD DM G +D+ KS S Y
Sbjct: 1135 SRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKSTSGY 1194
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L + GG VSWQS+LQKC+ EA KE LWMK+FL ELG Q
Sbjct: 1195 LITYAGGAVSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFLQELGFVQ-------- 1246
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
R+KHI+ RYH + I+E + ++L+KIHTD N DM+TK
Sbjct: 1247 --------------DRSKHIDTRYHWIRDILECKMLELEKIHTDDNGSDMMTK 1285
Score = 255 bits (652), Expect(2) = e-158
Identities = 149/343 (43%), Positives = 206/343 (60%), Gaps = 16/343 (4%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K+ Y HL VFGCKAF+HV ++ RSKLDSK IFIGYG +EFGYRL+DP +KK++RSR
Sbjct: 636 KDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSR 695
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXX 2000
D++F E++TI D +K+K+ S D L + RR DD E + ++
Sbjct: 696 DVVFFENQTIEDIDKVKQPESR--DSGSLVDIEPVSRRYTDD--VDEVQENVQNG----- 746
Query: 1999 XXXXXXDNTQPDVVGFKQGD*------SSSFDHMETQVXXXXXXXXXXXXXXS------- 1859
D V QGD + H E +V
Sbjct: 747 -----------DPVPDYQGDTVDVDGHADDVVHQEQEVPSQVPVDLPRRSDRERRPSTRY 795
Query: 1858 --FEYLLLTKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKN 1685
+Y+LLT GEP+SY++ + + W EA+++EM+SL N+T+ELV+ P ++ LKN
Sbjct: 796 SPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQEEMNSLYVNDTFELVKAPKNRKALKN 855
Query: 1684 KWIFKLK-KNGDKLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLE 1508
+W++++K + G + ++KA LVVKGF+ +KGIDF++IFS V+K SI VVLGLA L++E
Sbjct: 856 RWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIE 915
Query: 1507 IEQLDVKTTFLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
IEQ+DVKT FLHGD EEIYM Q E F V+GKE VC+LKK L
Sbjct: 916 IEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSL 958
Score = 216 bits (551), Expect(2) = 2e-82
Identities = 135/438 (30%), Positives = 225/438 (51%), Gaps = 8/438 (1%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
Y IW+ M+D L+ K L PV SAKP+++S++EW ++ G IR+WV+ +V +H
Sbjct: 16 YHIWKAKMKDL--LFVKKLHLPVFA-SAKPENMSDEEWDFEHQQVCGYIRQWVEDNVLNH 72
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
+ ET +W KL Y KT K+F ++++ N++ + G I + ++D+ +L+QL+
Sbjct: 73 IINETHARSLWNKLETLYASKTGNNKLFLLKQMMNIRYREGTLINDHVNDFQGVLDQLSG 132
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*R-NKESQYGI 3702
+ I DEV +T V++ NSAPNG VT K ++ + SQ
Sbjct: 133 MGIKFEDEVLGLWLLNTLPDSWETFRVSLTNSAPNGVVTMEYVKSGILNEEARRRSQDTS 192
Query: 3701 RVKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSR-ELMKCYHCGKIGHIXXXXXXXXXXXX 3525
+S + R +N RGR KS++ S+SR + ++C++CGK HI
Sbjct: 193 TSQSDILVTDDRGRNKQKGQRGRDKSRSKSRSRYKDIECHYCGKKSHIKKYSFKWKREKK 252
Query: 3524 XXXXXXEFVENNMSTV------TYKEEIVSLICGHGD*NYVGDISVEWIVDTGATCHCVP 3363
+ N ++TV + ++++ C WIVD+GA H P
Sbjct: 253 QDNKDGD-TGNQVATVRADLLVACDDNVINVACHE----------TTWIVDSGAAYHVTP 301
Query: 3362 KRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAV 3183
++E FT+Y GDFG+ +MGN + G G + +ET+ L L++V+ D+R+NL++
Sbjct: 302 RKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIRLNLIST 361
Query: 3182 NVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWH 3003
LD +G+ D K+ KGS++VA+ N +Y + S + +N V+ + + LWH
Sbjct: 362 GKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKECASELWH 421
Query: 3002 NILAHMSEKELQLLARQS 2949
L HMS K + LA++S
Sbjct: 422 KRLGHMSVKGIDYLAKKS 439
Score = 122 bits (306), Expect(2) = 2e-82
Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 7/225 (3%)
Frame = -2
Query: 2922 KGMTINSCDYYLLDKHRRVSFCI--PAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLHF 2749
K ++ C + L K RRVSF P ++ + LD S + P + S + F
Sbjct: 445 KEAKLDKCVHCLAGKQRRVSFMSHPPTRKSEPLDLIHSDVCG--PMKVRSLGGASYFVTF 502
Query: 2748 LMMLHEKLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC-- 2575
+ KLW++ L++KS VL VF FHA+V+R+T LKCI ++NGGEY F+ YC
Sbjct: 503 IDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDNGGEYCGP-FDEYCRR 561
Query: 2574 --VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQS 2401
++H+ T P PQ N +AER+N TI+ERVRC+L AKLP +F +A++ ++IN S
Sbjct: 562 YGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAEAVSTAVHVINLSPV 621
Query: 2400 IPLGFDILEKVWT*KN-PYTHI*TYLGAKLLFMCLRNKDQNLTVK 2269
I L ++ +KVW K+ Y H+ + G K R++ L K
Sbjct: 622 IALKNEVPDKVWCGKDVSYDHLRVF-GCKAFVHVPRDERSKLDSK 665
>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
Length = 1339
Score = 248 bits (632), Expect(3) = e-156
Identities = 141/349 (40%), Positives = 207/349 (59%), Gaps = 11/349 (3%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE Y HL VFGC A++H+ K+ RSKLD K+ +F+GYG +EFGYR +DP ++K++RSR
Sbjct: 645 KEVSYDHLRVFGCMAYVHIPKDERSKLDEKSKKCVFVGYGLDEFGYRFFDPVQRKLIRSR 704
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYN--DLEQTTILPRRAIDDEIAQETKHDIXXXXXX 2006
D++F E TI D +K++ D D+ TTI P I ++ E +
Sbjct: 705 DVVFMEDYTIEDIDKVENKDPTFEDEEIVDIGSTTIAPTPIIFEDAPIENQGMDLNVDNV 764
Query: 2005 XXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGE 1826
DVV + +S ++ S EY+ LT GE
Sbjct: 765 LNPNDVVDVGATNDVVENEVVQEVAS-----NELRRSTRDKRPSVRYPSNEYVFLTDGGE 819
Query: 1825 PKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNG-DK 1649
P++++++ + + W++A++DEM SL++NNT+ELV+LP GKR LKN+W++++K++
Sbjct: 820 PENFKEVLEDENKKEWMDAMEDEMQSLRENNTFELVKLPKGKRALKNRWVYRIKQDECTS 879
Query: 1648 LVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHG 1469
+YKA LVVKGF +GIDF +IF+ V+KM SI +VLGLA SL+LE+E++DVKTTFLHG
Sbjct: 880 QRRYKARLVVKGFKQREGIDFGEIFAPVVKMQSIRMVLGLAASLDLEVEKMDVKTTFLHG 939
Query: 1468 D*QEEIYMSQLEDFIVEGKEHSVCKLKKKLV--------WFETSSKTMV 1346
D EEIYM Q + F +GKE VCKL K L W++ + M+
Sbjct: 940 DLHEEIYMEQPDGFREKGKEDYVCKLVKSLYGLKQAPRQWYQKFNSVMI 988
Score = 236 bits (603), Expect(3) = e-156
Identities = 146/446 (32%), Positives = 234/446 (52%), Gaps = 14/446 (3%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
Y++W+ MED LY K PV + KP S +EW L R+ G IR+WVD V +H
Sbjct: 16 YNVWKGKMEDL--LYVKGFHLPVFSNE-KPDGKSGEEWNLLHRQVCGYIRQWVDDDVLNH 72
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V+ T +W KL Y RKT K+F ++L +L+ +G + + L+ + +LNQL+
Sbjct: 73 VSSVTHARSLWTKLEELYARKTGNNKLFLFKQLMSLRYSDGSPMTDHLNTFQGILNQLSE 132
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGKVTNANGKR*LVK*RNKESQYGIR 3699
+++ DE+ +T ++ NSAPNG ++ K ++ + G
Sbjct: 133 MKLIFDDEIQGLWLLGTLPNSWETFRTSLSNSAPNGIISMDLAKSSVLNEELRRKSQGSS 192
Query: 3698 VKSCLYCI--K*RFKNMGHDFRGRSKSKNWSKSREL--MKCYHCGKIGHIXXXXXXXXXX 3531
S + + R ++ G RG S+ K+ S ++C+HCG+ G I
Sbjct: 193 SHSEVLVTESRGRQQSRGPSNRGTSRDKSQGGSNRFSNIECHHCGEKGDI----KRFCRK 248
Query: 3530 XXXXXXXXEFVENNMSTVTYKEEIV-----SLICGHGD*NYVGDIS-----VEWIVDTGA 3381
+ NN E++ ++C N V +I+ ++W+VD+GA
Sbjct: 249 LKRENKKKGYNNNNKKEGNNNEDVAIVDDFFIVCD----NCVENINLSCDEMDWVVDSGA 304
Query: 3380 TCHCVPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLR 3201
+ H +R+LF+TY+ GDFG +MGN+ +++IG+GDI +ET+ E TL L+ V+ I +LR
Sbjct: 305 STHATSRRDLFSTYETGDFGVVRMGNNGQANVIGIGDICVETSNETTLVLKGVKHIPELR 364
Query: 3200 INLLAVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDA 3021
NLL+V LD EGYD+ + + KL KGS++VAK +Y + L S +IN +D+
Sbjct: 365 FNLLSVGELDNEGYDNSFSENEWKLKKGSMVVAKGKKNSNLYVVQLGVSKCYINTCDNDS 424
Query: 3020 SPNLWHNILAHMSEKELQLLARQSLI 2943
S LWH L HMSEK L +LA+++++
Sbjct: 425 SSELWHKRLGHMSEKGLSILAKKNVL 450
Score = 122 bits (307), Expect(3) = e-156
Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 10/201 (4%)
Frame = -2
Query: 2910 INSCDYYLLDKHRRVSF--CIPAKRKKKLDYN*SILMYVVPWR*SP*VAVSTLLHFLMML 2737
+ C + L K RRVSF P ++ + LD S + + R ++ +F+ +
Sbjct: 458 LRKCSHCLAGKQRRVSFKSSEPKRKSEVLDLVHSDVCGPMKTR-----SLGGAYYFVTFI 512
Query: 2736 HE---KLWMFYLQNKSQVLQVF*NFHAIVKRETQLPLKCICSNNGGEYISRVFEAYC--- 2575
+ K W + L+ K QVL F +F A V+RET LKCI +NNGGEY+ F+ YC
Sbjct: 513 DDYSRKTWAYTLKTKDQVLDTFKSFQASVERETGKKLKCIRTNNGGEYVGP-FDKYCQDQ 571
Query: 2574 -VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQSI 2398
++H+ + P TPQ N +AER+N T+VER+RC+L + LPK F G+A+ +L+N + +
Sbjct: 572 GIRHQKSPPKTPQLNGLAERMNRTLVERMRCLLSQSMLPKYFWGEALNTVVHLLNLTPCV 631
Query: 2397 PLGFDILEKVWT*KN-PYTHI 2338
PL FD+ VW K Y H+
Sbjct: 632 PLKFDVPNHVWNGKEVSYDHL 652
Score = 358 bits (919), Expect = 2e-98
Identities = 180/353 (50%), Positives = 247/353 (69%), Gaps = 1/353 (0%)
Frame = -2
Query: 1386 KSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIGH 1207
KSLYGLKQA RQWY+KF+S + H +K T D CV+ R+ + FIILLLYVDDMLI+G
Sbjct: 967 KSLYGLKQAPRQWYQKFNSVMIEHGYKMTKADHCVFFRNLSEDDFIILLLYVDDMLIVGK 1026
Query: 1206 DTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQN 1027
+ + I+ LK LS+SF +KDLG AR+ILG++I+ +R +L++SQ+KYVE++++RF++
Sbjct: 1027 NISRIRELKNTLSESFSMKDLGAARKILGIEIVRDRNEKKLYLSQEKYVEKVLRRFSMDK 1086
Query: 1026 AKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVES 850
AK++S PLA+HF K M I YSSA GSLMY VCTR +IA+AVGV S
Sbjct: 1087 AKAVSIPLASHFKLSHKLCPSTDEEKLRMKSIPYSSAVGSLMYAMVCTRPDIAHAVGVVS 1146
Query: 849 RFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRYL 670
R+LS K H +A+KW+ RYLRG+S + L+ G K +L G+TD D+ G LD KS S +
Sbjct: 1147 RYLSNPGKVHWEAVKWVMRYLRGSSNLKLTLGCKKPMLVGYTDSDLAGSLDDRKSTSGXM 1206
Query: 669 FIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCDS 490
F GG V+WQSKLQKC+ EA KE LW+++F ELG+KQ++Y++FCD+
Sbjct: 1207 VTFAGGAVAWQSKLQKCVALSTTEAEFIAVVEASKELLWLRKFAMELGVKQEKYVLFCDN 1266
Query: 489 QSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKV 331
QS + LSKN+ +H+R+KHI+VRYH + ++ + M+L+KIHTD N DMLTKV
Sbjct: 1267 QSVIHLSKNSSFHSRSKHIDVRYHWIRDALDSKLMELEKIHTDDNGSDMLTKV 1319
>gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 701
Score = 311 bits (797), Expect(2) = e-147
Identities = 162/325 (49%), Positives = 215/325 (66%), Gaps = 1/325 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
+KSLYGLKQA RQWYKKF+S + +K+TT D CV+++ D FIILLLYVDDMLI+
Sbjct: 381 RKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVFVKKFSDDDFIILLLYVDDMLIVE 440
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D + I RLK +L ++F +KDLG A++ILG+ I K +LW+SQ+ Y++++++RF ++
Sbjct: 441 KDVSRIDRLKKQLGEAFAMKDLGAAKKILGISI----KEKKLWLSQEHYIKKVLQRFQME 496
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
N+K + TPLA HF K MS + Y A GSLMY VCTR ++AY VG
Sbjct: 497 NSKVVGTPLAAHFKLSVKQSPSNEAEKTYMSKVPYVYAVGSLMYPMVCTRPDVAYVVGTV 556
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS S+ H A+KWI RYL GTS + L FG K L G+++ DM G +DS KS S Y
Sbjct: 557 SRFLSNPSREHWNAVKWILRYLHGTSGLRLCFGGDKPTLVGYSNSDMAGDVDSRKSTSGY 616
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L F GGVV+WQS+LQ+C+ EACKE LW+K+FL EL Q +Y +F D
Sbjct: 617 LINFAGGVVAWQSRLQRCVTLSTTEAEFIAITEACKELLWLKKFLQELDFVQDKYPLFVD 676
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH 418
SQS + L KN +H+R+KHI+VRYH
Sbjct: 677 SQSVIHLGKNPTFHSRSKHIDVRYH 701
Score = 242 bits (617), Expect(2) = e-147
Identities = 139/332 (41%), Positives = 199/332 (59%), Gaps = 5/332 (1%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
K Y +L+VFGCKAF+HV K+ RSKLD+K IFIGYG +EFGYRL+DP +KK++RS
Sbjct: 54 KNASYDYLHVFGCKAFVHVSKDERSKLDTKTRQCIFIGYGQDEFGYRLYDPVEKKLVRSH 113
Query: 2179 DIIFHEHETIADFEKLKEAPSVHVDYNDLEQTTI-LPRRAIDD---EIAQETKHDIXXXX 2012
D+ E +TI D K+ E + D N + + LP +D+ + + +H
Sbjct: 114 DVQLMEDQTIEDINKV-EKTTPKKDNNLTDGNPMRLPIHNLDNVETDAPNDEQHGDVDDQ 172
Query: 2011 XXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKD 1832
D+TQ + D ++ + + S EY+ LT
Sbjct: 173 QNGDVLEVPIDDTQEEHDMVHDDDLDNAHELPQVPPRRSNKLRQFSSRYSSDEYVALTDG 232
Query: 1831 GEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGD 1652
GEP+ +++ + Q W++A++DEM SL N+TY+LV+LP GKR L+N+WIF++K+ +
Sbjct: 233 GEPECFEEALESEKKQRWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFRVKQESN 292
Query: 1651 KLV-KYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFL 1475
+YKA LVVKGF +DFN+IFS V+KM SI VL L +L+LE+EQ+DVKT FL
Sbjct: 293 STSPRYKARLVVKGFRQRNDVDFNEIFSPVVKMSSIRTVLSLVATLDLEVEQMDVKTAFL 352
Query: 1474 HGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
HG+ +EEIYM Q + F+VEGKE VC+L+K L
Sbjct: 353 HGNLEEEIYMKQPDGFLVEGKEDHVCRLRKSL 384
>dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subterraneum]
Length = 1403
Score = 249 bits (636), Expect(3) = e-138
Identities = 124/257 (48%), Positives = 175/257 (68%), Gaps = 1/257 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
+KSLYGLKQA RQWYKKF+S ++ +K+TT D CV++R + FII+LLYVD MLI+G
Sbjct: 717 RKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSDCCVFVRKFSNDDFIIILLYVDHMLIVG 776
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
+ + I +L +L +S +KDLG A+QILG+ I+ +RK +LW+SQ+ Y++R+++RF ++
Sbjct: 777 KNISNIDKLMKQLGESIAMKDLGAAKQILGIRIMRDRKEKKLWMSQEHYIKRVLQRFQME 836
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSS-AGSLMYLTVCTRSNIAYAVGVE 853
N+K++STPL HF ++M + Y+S GSLMY VCTRS+IA+ VG
Sbjct: 837 NSKAVSTPLDTHFKLSSQQSPSSEDETFDMKRVPYTSDVGSLMYAIVCTRSDIAHIVGTV 896
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS + H A+KWI RYLRGT + L FG+ K LEG++D DM G +DS KS S Y
Sbjct: 897 SRFLSNPGREHWDAVKWILRYLRGTICMRLCFGEDKPTLEGYSDSDMAGDIDSRKSTSGY 956
Query: 672 LFIFTGGVVSWQSKLQK 622
+ F GG V+W ++ K
Sbjct: 957 MIKFAGGAVAWHVQIAK 973
Score = 212 bits (540), Expect(3) = e-138
Identities = 119/307 (38%), Positives = 183/307 (59%), Gaps = 4/307 (1%)
Frame = -1
Query: 2287 SKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSRDIIFHEHETIADFEKLKEAP---S 2117
S + S+ IFIGYG +EFGY+ +DP KK++RSRD++F + +TI D +K+++
Sbjct: 415 SWMQSQNNLSIFIGYGKDEFGYKFYDPLWKKLIRSRDVVFMKDQTIEDIDKVEKTTCKKD 474
Query: 2116 VHVDYNDLEQTTILPRRAIDDEIAQETKHDIXXXXXXXXXXXXXXDNTQPDVVGFKQGD* 1937
V + D + + I ++ H+ +N + + + +
Sbjct: 475 VTLSNIDSVRLPVHNLDTIGGDVQNGEPHEYVDDQQIGEEVNIPANNDEENDMSHDD-NL 533
Query: 1936 SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLLTKDGEPKSYQDLQSTSDNQCWIEAIKDE 1757
+ + + Q+ S EY+ L +GEPK +QD+ + +NQ W++A+ +E
Sbjct: 534 GEAPESSQVQLRRSNKQRQPSTRYNSDEYVTLNDEGEPKYFQDIMESDENQKWMDAMNNE 593
Query: 1756 MDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGDK-LVKYKAHLVVKGFA*EKGIDFNK 1580
M SL N+TY+LVELP G++ L+N+WI+++K + + KA LVVKGF KG+DFN+
Sbjct: 594 MKSLHDNHTYDLVELPKGEKALENRWIYRVKHESNSGSPRCKARLVVKGFRQRKGVDFNE 653
Query: 1579 IFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD*QEEIYMSQLEDFIVEGKEHSV 1400
IFS V+KM SI VL LA +L+LE+EQ+DVKTTFLHGD +EEIYM Q + F+V+GKE V
Sbjct: 654 IFSPVVKMSSIRTVLALAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLVKGKEDYV 713
Query: 1399 CKLKKKL 1379
C+L+K L
Sbjct: 714 CRLRKSL 720
Score = 83.6 bits (205), Expect(3) = e-138
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Frame = -2
Query: 2637 LKCICSNNGGEYISRVFEAYC----VKHELTEPGTPQHNEVAERINCTIVERVRCILRMA 2470
LKC+ S+NGGEY F+ YC + HE T P TPQ N +AER+N T+VERVRC+L A
Sbjct: 317 LKCVRSDNGGEYCGP-FDVYCKQQGIAHEKTPPKTPQLNGLAERMNRTLVERVRCMLSEA 375
Query: 2469 KLPKAF*GKAMTITCYLINRSQSIPLGFDILEKVW 2365
KLP+ + +A+ ++IN + ++ L ++ +K+W
Sbjct: 376 KLPQHYWDEALYTAVHVINLTPTVVLNSEVPDKIW 410
Score = 121 bits (303), Expect = 1e-23
Identities = 98/339 (28%), Positives = 152/339 (44%)
Frame = -3
Query: 3956 NLK*KNGRSIAEDLSDYHDLLNQLTTIEINLGDEVNCFISFRVFARHMDTLVVTVINSAP 3777
+LK K G SI++ LS++ LL+Q++ + I IS R +SAP
Sbjct: 13 SLKYKEGTSISDHLSEFQGLLDQMSVMGIKFERRTFGTISIR--------------SSAP 58
Query: 3776 NGKVTNANGKR*LVK*RNKESQYGIRVKSCLYCIK*RFKNMGHDFRGRSKSKNWSKSREL 3597
G V+ K ++ + M + +G S W K +
Sbjct: 59 KGVVSLETVKGGILN-----------------------EEMRRNAQGTSSQSEWRKDNKG 95
Query: 3596 MKCYHCGKIGHIXXXXXXXXXXXXXXXXXXEFVENNMSTVTYKEEIVSLICGHGD*NYVG 3417
K H + G +++ T +++V ++ H N V
Sbjct: 96 KKGKHKQRDGEDH--------------------DDDRVTTAINDDLV-ILRDHESVNLVS 134
Query: 3416 DISVEWIVDTGATCHCVPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTL 3237
D SV WIVD GAT H P++E FT+Y +GDFG KMGN V+ + GVGDI ++TN L
Sbjct: 135 DESV-WIVDNGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVAKVTGVGDICVQTNMGMQL 193
Query: 3236 TLRDVRDILDLRINLLAVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKH 3057
LRDV+ D+R NL++V +LD GYD+ + KL KG+++VA+ K+
Sbjct: 194 LLRDVKHAPDVRFNLISVYMLDDCGYDNHFGSGKWKLNKGNLVVARGE----------KN 243
Query: 3056 SGNHINAVQDDASPNLWHNILAHMSEKELQLLARQSLIP 2940
S +L+H+SEK L +LA++ ++P
Sbjct: 244 S-----------------KLLSHISEKGLNVLAKKDVLP 265
>gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 478
Score = 344 bits (882), Expect(2) = e-137
Identities = 172/325 (52%), Positives = 227/325 (69%), Gaps = 1/325 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
+KSLYGLKQA RQWYKKF+S + +K+TT D CV++R D FIILLLYVDDMLI+G
Sbjct: 154 RKSLYGLKQAPRQWYKKFESVMCEQDYKKTTSDHCVFVRKFSDDDFIILLLYVDDMLIVG 213
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
D + I RLK +L +SF +KD+G A++ILG+ II +RK +LW+SQ+ Y++ +++RF+++
Sbjct: 214 KDVSKIDRLKKQLGESFSMKDMGAAKKILGISIIRDRKDKKLWLSQEHYIQNVLQRFHME 273
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
N K++STPLA HF K NMS + Y+ A GSLMY VCTR +IA+AVG
Sbjct: 274 NVKAVSTPLAAHFKLSVKQCPSNEVEKINMSRVPYAYAVGSLMYAMVCTRPDIAHAVGTV 333
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS + H A+KWI RYLRGTS + L FG K L G++D DM G +DS KS S Y
Sbjct: 334 SRFLSNPGREHWNAVKWILRYLRGTSGLKLYFGGDKPTLVGYSDSDMAGDIDSRKSTSGY 393
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L F GGVV+WQS+LQKC+ EACKE LW+K+FL ELG Q +Y+++CD
Sbjct: 394 LVKFAGGVVAWQSRLQKCVALSTTEAEFIALTEACKELLWVKKFLQELGFVQDKYLLYCD 453
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH 418
SQSA+ L KN +H+++KHI+VRYH
Sbjct: 454 SQSAIHLGKNQTFHSKSKHIDVRYH 478
Score = 176 bits (447), Expect(2) = e-137
Identities = 85/157 (54%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Frame = -1
Query: 1846 LLTKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKL 1667
+LT +GEP+ Y++ + + Q W++A++DEM SL N+TY+LV+LP GKR L+N+WIFK+
Sbjct: 1 MLTDEGEPECYEEAIESEEKQKWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFKV 60
Query: 1666 KKNGDKLVK-YKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDV 1490
K+ + YKA LVVKGF KG+DFN+IFS V++M SI +L LAT+L+LE+E++DV
Sbjct: 61 KQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLDLEVEKMDV 120
Query: 1489 KTTFLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
KT FLHGD +EEIYM Q + F++EGKE VC+L+K L
Sbjct: 121 KTIFLHGDLEEEIYMKQPDGFLIEGKEDYVCRLRKSL 157
>emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]
Length = 809
Score = 343 bits (880), Expect(2) = e-132
Identities = 173/353 (49%), Positives = 241/353 (68%), Gaps = 1/353 (0%)
Frame = -2
Query: 1389 KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIG 1210
KKSLYGLKQA RQWYKKF+S + +K+TT + CV++ D F+ILLLYVDD+LI+G
Sbjct: 436 KKSLYGLKQAPRQWYKKFESVMGEQGYKKTTSNHCVFVHKFSDDDFVILLLYVDDILIVG 495
Query: 1209 HDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQ 1030
+ + I +LK +LSKSF +KDLGP ++ILG+ I +R +L++SQ++Y+E++++RFN+
Sbjct: 496 RNVSRIDKLKKQLSKSFSMKDLGPVKKILGIRIERDRASKKLYMSQEQYIEKVLERFNMS 555
Query: 1029 NAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVE 853
AK +++PLA+HF K +M + Y+SA GSLM VCTR +IAY +GV
Sbjct: 556 KAKVVNSPLASHFKLSRRHSPSIDKEKEDMRRVPYASAVGSLMNPMVCTRPDIAYVIGVV 615
Query: 852 SRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRY 673
SRFLS + H +A+KWI RYL+GTSK+ L+F K VL +TD +M G +D+ + Y
Sbjct: 616 SRFLSNPGRLHWEAVKWIMRYLQGTSKLKLTFESGKPVLVSYTDSNMAGDVDNRRPTLGY 675
Query: 672 LFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCD 493
L F+GG V WQS+LQK + EACKE LWMKRF+ ELG KQ+ Y+V+CD
Sbjct: 676 LMTFSGGAVFWQSRLQKSVALSTTEAEYIAAAEACKELLWMKRFIHELGFKQQRYVVYCD 735
Query: 492 SQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTK 334
+QS + LSKN+++H R+KHI+VRYH + + D +L+KIH D N DMLTK
Sbjct: 736 NQSVIHLSKNSIFHARSKHIDVRYHWMRDALNDNLFELEKIHIDHNGSDMLTK 788
Score = 160 bits (405), Expect(2) = e-132
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 7/157 (4%)
Frame = -1
Query: 1828 EPKSYQDLQSTSDNQC------WIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKL 1667
E + QD++ T + W++A++DEM SL +N +YE ++LP KR LKNKW++++
Sbjct: 283 EDHTIQDIEKTDEAMGDENKIKWVDAMQDEMKSLHENISYEFIKLPNEKRALKNKWVYRV 342
Query: 1666 KKNGDKLVK-YKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDV 1490
K+ YKA LVVKGF KGIDF++IFS V+KM I VVLGLA SL+LEIEQ+DV
Sbjct: 343 KQEEHASQPCYKAKLVVKGFIQNKGIDFDEIFSPVVKMSFIRVVLGLAASLDLEIEQMDV 402
Query: 1489 KTTFLHGD*QEEIYMSQLEDFIVEGKEHSVCKLKKKL 1379
KTTFLHGD +EIYM QLE FI++GKE CKLKK L
Sbjct: 403 KTTFLHGDLDKEIYMEQLEGFIIKGKEDYACKLKKSL 439
Score = 92.0 bits (227), Expect(2) = 2e-30
Identities = 44/78 (56%), Positives = 54/78 (69%)
Frame = -1
Query: 2356 EPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSRD 2177
E Y HL VFG KAF+H+LK+ R KLD+K +FIGYG E GYR +DP +KK++RSRD
Sbjct: 219 EIFYDHLRVFGYKAFVHILKDERFKLDAKTRLCVFIGYGQNELGYRFYDPVQKKLVRSRD 278
Query: 2176 IIFHEHETIADFEKLKEA 2123
+F E TI D EK EA
Sbjct: 279 AMFMEDHTIQDIEKTDEA 296
Score = 73.2 bits (178), Expect(2) = 2e-30
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Frame = -2
Query: 2661 VKRETQLPLKCICSNNGGEYISRVFEAYC----VKHELTEPGTPQHNEVAERINCTIVER 2494
+KR++ LKCI +NNGGEY F+ YC ++H+ T P TPQ NE+AER+N T+VER
Sbjct: 131 LKRQSGEKLKCIRTNNGGEYYGP-FDEYCRQHGIRHQKTPPKTPQLNELAERMNKTLVER 189
Query: 2493 VRCILRMAKLPKAF*GKAMTITCYLINRSQSIPLGFDILEKVWT 2362
A+ +++N + +PL FD+L+++W+
Sbjct: 190 -----------------ALNTVVHVLNLTPCVPLEFDVLDRIWS 216
Score = 102 bits (254), Expect = 4e-18
Identities = 51/123 (41%), Positives = 80/123 (65%)
Frame = -3
Query: 3311 MGNHSVSHIIGVGDIVIETNTECTLTLRDVRDILDLRINLLAVNVLDKEGYDSQHKDKQC 3132
MGN + IG+ + +ET+ L L++V+ ILD+R+NL++ LD EG+ + +D Q
Sbjct: 1 MGNDGSAKAIGIRYVRLETSNGIMLILKNVKHILDIRMNLISTGKLDDEGFCNTFRDSQW 60
Query: 3131 KLLKGSVLVAKENLCCTMYKIWLKHSGNHINAVQDDASPNLWHNILAHMSEKELQLLARQ 2952
KL KGS++VAK C ++Y + + + IN V DD++ LWHN L HMSEK L +LA++
Sbjct: 61 KLTKGSMVVAKGKKCYSLYLMQARVIDSSINVVDDDSTVELWHNRLDHMSEKGLMILAKK 120
Query: 2951 SLI 2943
+L+
Sbjct: 121 NLL 123
>emb|CAN60331.1| hypothetical protein VITISV_024553 [Vitis vinifera]
Length = 1134
Score = 228 bits (581), Expect(3) = e-127
Identities = 138/354 (38%), Positives = 194/354 (54%), Gaps = 1/354 (0%)
Frame = -2
Query: 1350 WYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLLYVDDMLIIGHDTNWIQRLKGEL 1171
WYKKFD+ + FKR D C Y++S D+ +IILLLYV+DMLI G D I LK +L
Sbjct: 819 WYKKFDNFMHRIGFKRCEADHCCYVKSFDNS-YIILLLYVBDMLIXGSDIEKINNLKKQL 877
Query: 1170 SKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVERIVKRFNIQNAKSISTPLANHF 991
SK F +KDLG A+QILGM II ++ L +SQ +YV++++ RFN+ AK +STPL +HF
Sbjct: 878 SKQFAMKDLGXAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHF 937
Query: 990 XXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRSNIAYAVGVESRFLSCSSKAHSK 814
+ +MS + Y+SA GSLMY VC R +IAYAVGV
Sbjct: 938 KLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCIRPDIAYAVGV-------------- 983
Query: 813 AIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYLDSIKSISRYLFIFTGGVVSWQS 634
G+ D D G +DS KS + ++F G +SW S
Sbjct: 984 ---------------------------GYVDADFAGDIDSRKSTTGFVFTLGGTAISWTS 1016
Query: 633 KLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLKQKEYMVFCDSQSALDLSKNTMY 454
LQK + EA KE +W+ FL ELG KQ+ ++ DSQS + L+KN+ +
Sbjct: 1017 NLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSVIFLAKNSAF 1076
Query: 453 HTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDMLTKVTSFIRKNLICVAA 292
H+++KHI +YH + ++ED+ + L+KI +N DMLTK + I K +C A+
Sbjct: 1077 HSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGVT-IEKLKLCAAS 1129
Score = 215 bits (548), Expect(3) = e-127
Identities = 126/325 (38%), Positives = 186/325 (57%), Gaps = 7/325 (2%)
Frame = -1
Query: 2359 KEPLYSHLNVFGCKAFIHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSR 2180
KE +SHL VF C +++++ + RSKLD+K+ FIGYG E+FGYR WD + +K++RSR
Sbjct: 526 KEVKFSHLKVFCCVSYVYIDYDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSR 585
Query: 2179 DIIFHEH-------ETIADFEKLKEAPSVHVDYNDLEQTTILPRRAIDDEIAQETKHDIX 2021
++IF+E +D ++ + S V+ ++L ++T+ + +E K ++
Sbjct: 586 NVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDELTESTV-------QKGGEEDKENV- 637
Query: 2020 XXXXXXXXXXXXXDNTQPDVVGFKQGD*SSSFDHMETQVXXXXXXXXXXXXXXSFEYLLL 1841
N+Q D+ SS + TQ YLLL
Sbjct: 638 --------------NSQVDLSTPVAEVRRSSKNIRPTQ-----------RYSPVLNYLLL 672
Query: 1840 TKDGEPKSYQDLQSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKK 1661
T GEPK Y + ++ W A+KDEMDSL N T+EL ELP GK+ L NKW++K+K
Sbjct: 673 TDGGEPKCYNEALQDENSSKWELAMKDEMDSLLGNQTWELTELPXGKKALHNKWVYKIKN 732
Query: 1660 NGDKLVKYKAHLVVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTT 1481
D +YK LVVKGF ++GID+ +IFS V+KM +I VVLG+ + NL +EQL+VKT
Sbjct: 733 EHDGSKRYKVRLVVKGFQQKEGIDYTEIFSPVVKMSTIRVVLGMVAAENLRLEQLBVKTA 792
Query: 1480 FLHGD*QEEIYMSQLEDFIVEGKEH 1406
FLHGD +E++YM Q E IV+G+E+
Sbjct: 793 FLHGDLEEDLYMIQPEXXIVQGQEN 817
Score = 65.1 bits (157), Expect(3) = e-127
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -2
Query: 2574 VKHELTEPGTPQHNEVAERINCTIVERVRCILRMAKLPKAF*GKAMTITCYLINRSQSIP 2395
++ E T GTPQ N VAER+N T+ ER R + A LPK F A++ YLI+R S+P
Sbjct: 454 IRMEKTISGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLIBRGPSVP 513
Query: 2394 LGFDILEKVWT*KN-PYTHI 2338
+ F + E+VW+ K ++H+
Sbjct: 514 MEFRLPEEVWSGKEVKFSHL 533
Score = 98.2 bits (243), Expect = 1e-16
Identities = 52/157 (33%), Positives = 90/157 (57%)
Frame = -3
Query: 4238 YSIWQLMMEDQDHLYGKDLFDPVLGDSAKPKDISEDEWRRLDRKALGTIRKWVDISVFHH 4059
++ W++ +ED +LYG+ L P+LG KP+ + +EW LDR+ LG IR + SV H+
Sbjct: 19 FAYWRMQIED--YLYGRKLHLPILG--TKPESMKAEEWALLDRQVLGVIRLTLSRSVAHN 74
Query: 4058 VAQETSLSVVWKKLAAPYERKTAMKKIFAIRKLSNLK*KNGRSIAEDLSDYHDLLNQLTT 3879
V +E + + + K L+ YE+ +A K+ ++KL NLK S+A+ L++++ + NQL++
Sbjct: 75 VVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSS 134
Query: 3878 IEINLGDEVNCFISFRVFARHMDTLVVTVINSAPNGK 3768
+EI+ DE+ I + + V NS K
Sbjct: 135 VEIDFDDEIRALIVLASLPNSWGAMRMAVSNSTGKEK 171
Score = 90.1 bits (222), Expect(2) = 2e-15
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Frame = -3
Query: 3404 EWIVDTGATCHCVPKRELFTTYKAGDFGDTKMGNHSVSHIIGVGDIVIETNTECTLTLRD 3225
+W++D+GA+ H P RE+ Y AGDFG + + S ++G+GD+ I L
Sbjct: 231 DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 290
Query: 3224 VRDILDLRINLLAVNVLDKEGYDSQHKDKQCKLLKGSVLVAKENLCCTMYKIWLKHSGNH 3045
VR I DLR NL+ + LD EG+ K+ KG+ ++A+ T+Y +
Sbjct: 291 VRHIPDLRRNLIXIGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY---MTSCPRD 347
Query: 3044 INAVQD-DASPNLWHNILAHMSEKELQLL 2961
I AV D +LWH L HMSEK +++L
Sbjct: 348 IIAVADASTDTSLWHRRLGHMSEKGMKML 376
Score = 24.6 bits (52), Expect(2) = 2e-15
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = -1
Query: 2863 FLYTCXXXXKTRL*LKHSNVCGPMEV--ESLGGSEYFVTFLNDAS*KTLDV-LLAKQKPS 2693
FL T +L L H+++ GP V +Y++TF++D+S K + + P
Sbjct: 406 FLKTGRTPKAEKLELVHTDLWGPSPVVIPRRFKKQYYITFIDDSSRKGIRMEKTISGTPQ 465
Query: 2692 TTGILKFSCH--SEERNSITIEVHLLKQWW 2609
G+ + +E S+ + L K +W
Sbjct: 466 QNGVAERMNRTLNERARSMRLHAGLPKTFW 495
>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
Length = 687
Score = 417 bits (1073), Expect = e-125
Identities = 215/363 (59%), Positives = 265/363 (73%), Gaps = 1/363 (0%)
Frame = -2
Query: 1416 EKNTVCVS*KKSLYGLKQALRQWYKKFDSSITSHLFKRTTVDTCVYIRSCDDGGFIILLL 1237
++N VC KKSLYGLKQA RQWY KFDS ++++ +KRTT D CVY R +G FIIL L
Sbjct: 309 KENFVCKL-KKSLYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCL 367
Query: 1236 YVDDMLIIGHDTNWIQRLKGELSKSFDVKDLGPARQILGMDIIHERKLNRLWISQDKYVE 1057
YVDDMLI+G D I RLK +LSKSFD+KDLGPA+QILGM+I +RK +LW+SQ+ Y+E
Sbjct: 368 YVDDMLIVGQDVEMICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIE 427
Query: 1056 RIVKRFNIQNAKSISTPLANHFXXXXXXXXXXXXXKYNMSCILYSSA-GSLMYLTVCTRS 880
R+++RFN++NAK ++TPLA HF K +MS I YSS GSLMY VCTR
Sbjct: 428 RVLERFNMKNAKPVNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRP 487
Query: 879 NIAYAVGVESRFLSCSSKAHSKAIKWIFRYLRGTSKIYLSFGKSKAVLEGFTDLDMVGYL 700
+IA+AVG+ SR+L+ SK H +A+KWI RYLRGTS + L FG + +LEGFTD DM G L
Sbjct: 488 DIAHAVGLVSRYLANPSKVHWEAVKWILRYLRGTSNLSLCFGGGEPILEGFTDADMAGDL 547
Query: 699 DSIKSISRYLFIFTGGVVSWQSKLQKCIXXXXXXXXXXXXXEACKETLWMKRFLTELGLK 520
D+ KS S YLF F G +SWQSKLQKC+ EA KE LW+KRFL ELGLK
Sbjct: 548 DNRKSTSGYLFKFARGAISWQSKLQKCVALSTTEVEYIAAVEASKEMLWLKRFLQELGLK 607
Query: 519 QKEYMVFCDSQSALDLSKNTMYHTRTKHINVRYH*LCTIIEDEEMQLKKIHTDQNTLDML 340
Q EY+VFCDS+SA+DLSKN MYH RTKHI+VRYH L +I++ M+LKKIHT++N DML
Sbjct: 608 QSEYVVFCDSKSAMDLSKNIMYHARTKHIDVRYHWLRVVIKERLMKLKKIHTNKNGADML 667
Query: 339 TKV 331
TKV
Sbjct: 668 TKV 670
Score = 261 bits (668), Expect = 2e-70
Identities = 154/322 (47%), Positives = 208/322 (64%), Gaps = 11/322 (3%)
Frame = -1
Query: 2311 IHVLKE*RSKLDSKATPYIFIGYGGEEFGYRLWDPKKKKVMRSRDIIFHEHETIADFEKL 2132
+HV KE R KLD K +P +F+GYG EEFGYRL+DP K+KV+RSRD++F+EHE F L
Sbjct: 1 MHVPKEHRLKLDFKTSPCVFVGYGDEEFGYRLYDPAKQKVVRSRDVVFYEHEM--SFHLL 58
Query: 2131 KEAPSVHVDYN-DLEQTTILPRRAIDDEI---AQETKHDIXXXXXXXXXXXXXXDNTQPD 1964
+ + +++ D+ + A DD++ A E H+I QPD
Sbjct: 59 GADKTYYSNFSHDVIDMPMPHVSASDDQLTGDAPEDGHEIAHEHDHIEEVQPDVVVPQPD 118
Query: 1963 --VVGFKQGD*SS----SFDHMETQ-VXXXXXXXXXXXXXXSFEYLLLTKDGEPKSYQDL 1805
V + G+ S+ S H+E + S EY+L+T +GEP+S Q++
Sbjct: 119 DEAVDVQHGESSNQGEKSSPHVEEPTLRKSTRVRQPSRLYPSSEYILITDEGEPESLQEV 178
Query: 1804 QSTSDNQCWIEAIKDEMDSLKKNNTYELVELPIGKRPLKNKWIFKLKKNGDKLVKYKAHL 1625
S SD W++A++++MDSLKKN TY+LV+ P GK+ LKN+W+FK KK+G+KLVK KA L
Sbjct: 179 LSHSDKDHWLKAMQEDMDSLKKNETYDLVKPPKGKKVLKNRWLFKNKKDGNKLVKRKARL 238
Query: 1624 VVKGFA*EKGIDFNKIFSLVIKMISI*VVLGLATSLNLEIEQLDVKTTFLHGD*QEEIYM 1445
VVKG +KGIDF++IF+ V+KM SI ++LGLAT LNLE+EQLDVKT FLHGD EEIYM
Sbjct: 239 VVKGCHQKKGIDFDEIFAPVVKMTSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYM 298
Query: 1444 SQLEDFIVEGKEHSVCKLKKKL 1379
Q E F V+GKE+ VCKLKK L
Sbjct: 299 EQPEGFEVKGKENFVCKLKKSL 320