BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00027217
         (5163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   674   0.0  
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   639   0.0  
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   616   0.0  
ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus] >gi|...   614   0.0  
gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]   615   0.0  
gb|ASG91859.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]                608   0.0  
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               605   0.0  
gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           605   0.0  
gb|ASG91891.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               604   0.0  
gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
gb|ASG91880.1| polyprotein [Cacao swollen shoot virus]                605   0.0  
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               604   0.0  
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] >gi|347...   604   0.0  
gb|ASG91869.1| polyprotein [Cacao swollen shoot virus]                604   0.0  
gb|ASG91886.1| polyprotein [Cacao swollen shoot virus]                603   0.0  
gb|ATZ69463.1| ORF3 polyprotein [Cacao swollen shoot CE virus]        601   e-180

>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  674 bits (1738), Expect = 0.0
 Identities = 354/676 (52%), Positives = 447/676 (66%), Gaps = 25/676 (3%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR Q R    +QA RRI+ RIT        TLEQ ++P+  L+ SMQERA+
Sbjct: 25   LYEDQIRDYRRGQRRRFVARQAARRIASRITGRRFN--QTLEQVVNPEESLQQSMQERAN 82

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RDD +HRVY HRSE+AIL  DG Q DR+ IQ  SY+ L RS  Q+IHLG
Sbjct: 83   LVPAEVLYRSRRDDINHRVYSHRSEEAILCVDGQQQDRLVIQPDSYEALRRSGFQFIHLG 142

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            I+QVRIQ LH  + GT AL+VFRDNRW GDQAI A ME+DLT G+QLVYVIPD M+T+ D
Sbjct: 143  IMQVRIQILHRADEGTAALVVFRDNRWQGDQAIFATMEIDLTSGTQLVYVIPDTMMTLRD 202

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F+RNIQ++ILTRGYE W NG ANLL+TRG++ R+SNTPNVG AY++  + D+L S G++A
Sbjct: 203  FYRNIQISILTRGYENWRNGEANLLVTRGVMARLSNTPNVGFAYQIQHVTDHLESRGVRA 262

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITIPMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQF 3065
            LPG RYS   +QG NW +R PQI IPM+PSEV++RNL DG +S+ F DY+         +
Sbjct: 263  LPGRRYSAEQIQGQNWIIRQPQINIPMRPSEVDTRNLYDGSVSIRFRDYAPTDEQATPAY 322

Query: 3064 NARDEEIDQDEEKLRSSHTIAALLHE-------------YTFILTDDNPTEAPITETTML 2924
            N  DEEI++DEE+L   H + A+L E             Y F +    P  + I  +++ 
Sbjct: 323  NKHDEEINEDEEELIQEHHVIAVLTEEDRWDTLGQPSGKYDFYVRYSAPESSQIPISSI- 381

Query: 2923 HSETXXXXXXXXXXXXXXXXXXXLASLSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGG 2744
               T                   +A L+          PI+D       +F NPFA  GG
Sbjct: 382  -QSTGWEDMDDAVEEDDYDPDARMALLNLMGRAPVHQIPIYDESDAEMDDFINPFAEGGG 440

Query: 2743 ----GDNNN------LDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPEN 2594
                G  N+       +E+    ++YP + KL          ++VYSTS V S Y PP +
Sbjct: 441  ERDTGSENSEKLFVFQEEVAEPTLDYPVMKKL----------EKVYSTSEVTSRYTPPTD 490

Query: 2593 TAMGQPGYPPAR--GDPGPSRPPLTQEQHHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIP 2420
              MG P YPPAR     G S    +    + R  F++G+N+E+W+LP AQQ+GGAMFVIP
Sbjct: 491  AVMGPPSYPPARNINGAGTSYAAASPPNFNRRVNFKAGYNDELWSLPPAQQKGGAMFVIP 550

Query: 2419 EQLELFDDTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYE 2240
            EQ+ +F D FSRWESITKNHV+SQ FTD +DK+EYMENLLGE+EK+ WIQWRM Y AEYE
Sbjct: 551  EQIGMFHDVFSRWESITKNHVSSQGFTDVRDKLEYMENLLGEVEKLLWIQWRMQYNAEYE 610

Query: 2239 ALVNIGDGREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMND 2060
             LV  G+GREGT NI+SQMRRVF+ EDP QGSTVIQ+ AYRDLEKLSCDN+K I++Y+N 
Sbjct: 611  ELVRTGEGREGTQNIISQMRRVFSLEDPAQGSTVIQEEAYRDLEKLSCDNIKYIVQYLNQ 670

Query: 2059 YLRIAAKSGRLYAGMK 2012
            YLR+AAKSGR Y GM+
Sbjct: 671  YLRLAAKSGRAYVGME 686



 Score =  242 bits (617), Expect = 2e-60
 Identities = 116/219 (52%), Positives = 155/219 (70%), Gaps = 1/219 (0%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y   KR  IR S+ +KGKPHESHARIEKRKHLI NK+ KCYLCG+EGHFAR+CP++R++ 
Sbjct: 757  YKDQKRLGIRKSQRYKGKPHESHARIEKRKHLIRNKRCKCYLCGEEGHFARECPNDRKSA 816

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEED-NDLQKAVYTLQLNDAIFMLG 1670
             RVA+FEQL++P+D DI+SV EGE  SDAIYS+SEGE+   DL +++ +L + + +FMLG
Sbjct: 817  KRVAMFEQLELPEDYDIVSVNEGEDNSDAIYSLSEGEDGMEDLGQSLKSLMITEKMFMLG 876

Query: 1669 QLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLVTAC 1490
            + D G+ P++KVS+EQ+ CQH W +N  I          C+   ++RARIHC  C  TAC
Sbjct: 877  EEDGGWRPKIKVSDEQLACQHKWEHNGEIQQFVYLKCLGCQCPTMKRARIHCPKCKATAC 936

Query: 1489 NLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCE 1373
            NL GPYYF K+V +         P+ L+ EQ+ +I WCE
Sbjct: 937  NLCGPYYFKKEVPVAPPPPTPMNPRKLIMEQQNHIQWCE 975



 Score =  169 bits (429), Expect = 2e-38
 Identities = 82/142 (57%), Positives = 104/142 (73%)
 Frame = -1

Query: 1263 EIDEATNMLLEDTTCKLTAAHKIEGPRLVKNMLYNLTIEIKIPRIPRFPLKAILDTGATT 1084
            E  E  N L E+   K+    +    ++V+NMLYN  I I IP I +F +KAILDTGATT
Sbjct: 1031 EEGEQANFLQEEKVNKVAVQEEQRPKKMVRNMLYNFIISIDIPGIDKFSVKAILDTGATT 1090

Query: 1083 CCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSFPMILG 904
            CC++Q SIPKEALE NT++V FSG+NS  T   KLK GRM IG+N+FRIPYTYSFP+ + 
Sbjct: 1091 CCIDQESIPKEALEENTYLVRFSGVNSTMTANKKLKGGRMFIGENMFRIPYTYSFPIKME 1150

Query: 903  DNI*MILGCNFIRAMHGGVRLQ 838
            D + MI+GCNFIRAM+GGVR++
Sbjct: 1151 DGVQMIVGCNFIRAMYGGVRIE 1172


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
 gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
          Length = 1892

 Score =  639 bits (1648), Expect = 0.0
 Identities = 346/707 (48%), Positives = 444/707 (62%), Gaps = 60/707 (8%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            LFEDQI +YR +Q R +  Q+A RR+ +RIT G      TLEQ++DPQA L++SMQERA 
Sbjct: 28   LFEDQIRDYRNSQRRAYTTQRAVRRLRRRIT-GRQPYQETLEQEVDPQADLQMSMQERAR 86

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+AIL TDGNQ+DR FIQ  S + L R+ + +IH+G
Sbjct: 87   LVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTFIQPESMEALQRTGISFIHIG 146

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            I+QVR+Q LH Q  GTMAL+VFRD RWNGDQ+I A MEVDLT G Q++YV+PD M+TIGD
Sbjct: 147  IMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEVDLTEGRQIIYVVPDTMMTIGD 206

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RNIQ++ILTRGY  W NG ANLL+TRG+VGR+SNTPNV  AYE+  + DYL S G+QA
Sbjct: 207  FARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIGNVTDYLTSQGVQA 266

Query: 3244 LPGLRYSTASLQGLNWTLRPPQI-TIPMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G RY +  LQ   W LRPPQ+  +P  P  V++RNL+DG ISL F DY+         
Sbjct: 267  IAGRRYDSRELQNQQWILRPPQVERLPQAPKNVDTRNLIDGSISLRFRDYATTSTPELPS 326

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHE---------------YTFILTDDNPTEAPITET 2933
            +N +DEE+D DEE+L   H +AA + E               + F++    P  + I   
Sbjct: 327  YNEQDEEVDPDEEQL-MEHVVAAFVEEEPKEIWDTLGQPSGKFDFLVKYSAPASSKIRIE 385

Query: 2932 TMLHSETXXXXXXXXXXXXXXXXXXXLASLSKQPTTNSGD-------------SPIWDTD 2792
             ++   T                   L S S++ + +  D              P     
Sbjct: 386  DIV--PTGWGDEWEQPEQQQSPQQQQLLSCSQEESDDEDDWVSRFQFLAQFDEEPATQPQ 443

Query: 2791 SEGSSEFTNPFATKGGGDNNN-----------------------LDELIATGME------ 2699
            S  S  + NPFA  GG D N+                        +E +A   E      
Sbjct: 444  SPQSPTWYNPFAEGGGSDENDENPDPEESEEMGNEMGYETEVEEQEEKVAMIQEDPDLLP 503

Query: 2698 YPCLHKLLQEVEDKNNKQQVYST-STVISPYRPPENTAMGQPGYPPARGDPGPS-RPPLT 2525
            YP L +LL+      N+++V+ST  + +S YRPP++TAM   GY PARG+   S   P+ 
Sbjct: 504  YPHLRELLK------NEEKVFSTQQSEVSSYRPPQDTAMTPAGYAPARGEASSSTHQPMF 557

Query: 2524 QEQHHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDTFSRWESITKNHVASQA 2345
            +     R +F+   + E W  P+AQ Q GAMFVIP Q+ LF D F+RWESITKN+VASQ 
Sbjct: 558  EGYMPRRPQFKQDRSTEYWQFPTAQGQTGAMFVIPRQIGLFHDAFNRWESITKNYVASQG 617

Query: 2344 FTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGREGTHNILSQMRRVFTS 2165
            FTD KDK E+MENLLGE EK+TW+QWRM++P EY+ +VN  DGREGT NILSQMRRVFT 
Sbjct: 618  FTDSKDKAEFMENLLGETEKLTWVQWRMNFPTEYQEMVNAADGREGTQNILSQMRRVFTL 677

Query: 2164 EDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSGRLY 2024
            EDPT GST +QD AYRDLE+LSC N+KDI+ ++NDY R+AAKSGR++
Sbjct: 678  EDPTTGSTAVQDEAYRDLERLSCTNIKDIVSFLNDYARLAAKSGRMF 724



 Score =  179 bits (455), Expect = 2e-41
 Identities = 89/223 (39%), Positives = 137/223 (61%), Gaps = 7/223 (3%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y   KRY +R S T+KGKPH +HARIEK+KHL+ NK+ KCYLCG+ GHFAR+CP++++N 
Sbjct: 799  YGEKKRYGVRRSTTYKGKPHPTHARIEKQKHLVRNKRCKCYLCGEMGHFARECPNDKKNT 858

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDLQ------KAVYTL-QLND 1688
             RVA++EQL+IP+  +++SV+EGE  SDAI+SISE E+++ L       + ++   +  D
Sbjct: 859  RRVAMYEQLNIPEGFEVVSVEEGEEVSDAIFSISENEDEDALHTGGAFAETIFMFHEGTD 918

Query: 1687 AIFMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLT 1508
             ++  G+ D GY P  +++ EQ  C+H+W  N+ +          CK+   +R R+HC  
Sbjct: 919  NVYWAGKKD-GYLPYKRITREQFQCEHEWQMNQEVATVELEKCSFCKQETRRRMRLHCPK 977

Query: 1507 CLVTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISW 1379
            C +T+C L    Y    +            K LL +Q+ YI++
Sbjct: 978  CRITSCVLCSSNYCGIAIKPEPVQTSFFNEKSLLTQQQEYIAY 1020



 Score =  148 bits (373), Expect = 9e-32
 Identities = 71/117 (60%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
 Frame = -1

Query: 1173 NMLYNLTIEIKIPRIPRFPLKAILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QT 994
            NMLYN+ +EI IP +PRF +KAILDTGAT+CC+    IPK A+E NTF V F GINS Q 
Sbjct: 1121 NMLYNMDVEIDIPSVPRFTVKAILDTGATSCCISMDKIPKAAIEPNTFEVTFRGINSVQK 1180

Query: 993  TRMKLKHGRMTIGDNIFRIPYTYSF-PMILGDNI*MILGCNFIRAMHGGVRLQFTRL 826
            +  KLK+G+M IG ++FRIPYTY F  + LGD++  +LGCNFIR MHGGVRL+ T +
Sbjct: 1181 SNKKLKYGQMRIGGHMFRIPYTYCFESLTLGDDVQYVLGCNFIRNMHGGVRLEGTEV 1237


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  616 bits (1589), Expect = 0.0
 Identities = 333/665 (50%), Positives = 426/665 (64%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            LFEDQ+ +YRRNQ R+ N+++  RR+ +R   GT     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 24   LFEDQVRDYRRNQRRIFNLRRNARRL-RRHMMGTRYQ-DTLEQEIDPQTTLRLSMQERAR 81

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE++IL  +GNQ+DR FIQ  S +QL R+ M ++H+G
Sbjct: 82   LVPAEVLYRSRRDTVHHRVYTHRSEESILCVNGNQIDRAFIQPESLEQLQRTGMAFVHIG 141

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVR+Q LH QE GTMALIVFRDNRW+GDQ+I A MEVDLT+GSQLV+VIPD M+TIGD
Sbjct: 142  ILQVRVQILHRQEEGTMALIVFRDNRWSGDQSIFAQMEVDLTKGSQLVFVIPDTMMTIGD 201

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RNIQL+ILTRGY+ W NG ANLLITR + GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 202  FARNIQLSILTRGYDNWQNGEANLLITRSMTGRLSNTPNVAFAYQIASATDYLASHGVRA 261

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G ++    L+G  W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AAP      
Sbjct: 262  IAGKKFDLHKLRGQQWILRPPQADITPMQPRTVETRNLIDGSISIRFHDYEAAPSTSRPT 321

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N +DEE++ DEE     HTIA              P E P     +   E         
Sbjct: 322  YNEQDEEVESDEESELREHTIAVWF----------GPEELPDATGRIKVWEESMNGNGRF 371

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWDTDS----EGSSEFTNPFA-----TKGGGDN 2735
                          ++     +  + PIWD  S    EG+ +  +P        K   + 
Sbjct: 372  FRYYTPPPENDTQIVA--TGWDDDEPPIWDKSSEDEDEGNEDDDDPNTYMLQLQKEEDEW 429

Query: 2734 NNLDELIATG----MEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYP 2567
              + E IA G    +EYP    L + V  +            +  Y PP +T M   GYP
Sbjct: 430  QEIKEEIAAGWQENLEYPVKKPLTETVLSE------------VVDYNPPGDTLMTPVGYP 477

Query: 2566 PARGDPG--PSRPPLTQEQHHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
            PA       P +PPL + Q     RF+    +E W LPS+Q   GA+FV+P+Q+ LF D 
Sbjct: 478  PASTTRSQVPDKPPLFEGQSSHVPRFKKDNYSEWWQLPSSQGTTGALFVMPKQIGLFHDV 537

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWES+TKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 538  FSRWESVTKNYVAAQGFTDPVEKVEFMENLLGETEKLTWIQWRMNYEAEYQQLITQADGR 597

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++RVF+ EDP  GST +QD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 598  QGTQNILSQIKRVFSLEDPASGSTRVQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 657

Query: 2032 RLYAG 2018
            R++ G
Sbjct: 658  RMFLG 662



 Score =  204 bits (518), Expect = 8e-49
 Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 5/220 (2%)
 Frame = -3

Query: 2011 RYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNIIRVAI 1832
            +Y IR SKT++GKPHE+HAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++ RVAI
Sbjct: 740  KYGIRRSKTYRGKPHETHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNSKRDVKRVAI 799

Query: 1831 FEQLDIPDDCDILSVQEGEAQSDAIYSISEGE-----EDNDLQKAVYTLQLNDAIFMLGQ 1667
            FE +D+P+  DI+SV+EGEA+SDAIYSISE E     E+    + V+  +  D  + LG+
Sbjct: 800  FEGIDLPEGYDIISVEEGEAESDAIYSISENEDEVLPEEGVKTEKVFMFREEDQTYWLGR 859

Query: 1666 LDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLVTACN 1487
             +  +   VKVS +Q NC H W +N+ I          CK+    R+RIHC TC +TAC 
Sbjct: 860  KNH-WTAMVKVSSQQYNCLHQWEHNQEITQVAYLKCYFCKQQTHIRSRIHCSTCTLTACF 918

Query: 1486 LYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +  P Y N  V           P  LL++Q+ YI W E +
Sbjct: 919  MCAPVYCNTTVQQAPKQAIPYNPNTLLQQQQGYIQWLEAE 958



 Score =  145 bits (367), Expect = 5e-31
 Identities = 75/148 (50%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
 Frame = -1

Query: 1266 KEIDEATNMLLEDTTCKL----TAAHKIEGPRLVKNMLYNLTIEIKIPRIPR-FPLKAIL 1102
            KE DE +  L EDT  ++    T   ++  P    NMLYN+ + + IP + R   +KAIL
Sbjct: 1005 KEDDEQSAYLEEDTIVRVIGHGTEEQQVSKPVKKGNMLYNMDVVLMIPEVGRPIKVKAIL 1064

Query: 1101 DTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYS 922
            DTGATTCC+   S+P  A+E NTF+V+F GINS Q+   KLK+G+M I ++ FRIPY Y+
Sbjct: 1065 DTGATTCCINIASVPATAIEQNTFMVHFKGINSSQSVDKKLKYGKMMISNHQFRIPYCYA 1124

Query: 921  FPMILGDNI*MILGCNFIRAMHGGVRLQ 838
            FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1125 FPISLGDGIEMILGCNFIRGMYGGLRIE 1152


>ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus]
 gb|AKA45804.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  614 bits (1584), Expect = 0.0
 Identities = 342/698 (48%), Positives = 441/698 (63%), Gaps = 51/698 (7%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            LFEDQI  YR+ + RLHN +Q   R+ +RIT  +     TLEQQIDPQ  LR SMQERA+
Sbjct: 23   LFEDQIRNYRQRERRLHNARQVVGRLHRRITGRSQLHNQTLEQQIDPQVHLRNSMQERAA 82

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLYHS  DD HHRVY+HRSE+A+L TD  Q DR+FIQE S+KQL RSRMQ+IH+G
Sbjct: 83   IVPAEVLYHSRCDDEHHRVYVHRSEEALLCTDNQQQDRIFIQEESFKQLQRSRMQFIHIG 142

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ++Q+RIQ LH  + GT+AL+VFRDNRW  D+++ A MEVDL++GSQLVYVIP+ M+TIGD
Sbjct: 143  VIQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIGD 202

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F+ N+Q++ILTRGYE W  G ANLLITRGLVGR+SNTPNVG AYEV  +VDYL+SHG+QA
Sbjct: 203  FYNNVQVSILTRGYEAW-RGEANLLITRGLVGRLSNTPNVGFAYEVQSVVDYLVSHGVQA 261

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITIPMQPSEVNSRNLLDGRISLSFSDYSAA--PIIRPA 3071
            +PG R +   LQG NW +RP Q +IP QP+EV++R  +DG ISL F +Y++A     R  
Sbjct: 262  IPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTISLRFGNYTSARTSTTRRI 321

Query: 3070 QFNARDEEIDQDEEKL---------RSSHTIAALLHE-------YTFILTDDNPTEAPIT 2939
             +N RDEEI  DEE++          +   I   L E       Y    T D+    P+ 
Sbjct: 322  AYNLRDEEIQSDEEQIIAVFKLDCYEAQPAIWDTLGEPSGKFGYYVRYDTHDDNLHIPL- 380

Query: 2938 ETTMLHSETXXXXXXXXXXXXXXXXXXXLASLSKQPTTNSGDSPIWDTDSEGSSEFTNPF 2759
            E  +                        L++L   P     D P         S+  NPF
Sbjct: 381  EHIIATGWDDDDDDCTTSSSDEASYLQHLSNLGGTPVPIEQDLPY----PVPISDMINPF 436

Query: 2758 A-TKGGGDN---NNLDELIATGME---YPCLHKLLQEVED-------------------- 2660
            A T+GGGD    NN      +  E    P      +E+                      
Sbjct: 437  ASTEGGGDKAPINNFPIFDKSDEEEEILPSSDSCRKEIASYIAAAFPENNADDEIDYPQL 496

Query: 2659 KNNKQQVYSTSTVISPYRPPENTAMGQPGYPPA-----RGDPGPSRPPLTQEQHHP-RTR 2498
            KN +Q +Y++ + I+ Y+PP++ AMG P Y P      R + GP RP    E + P   R
Sbjct: 497  KNLQQHLYASPSAITGYKPPQDVAMGPPNYGPTPLRVIRPEAGPLRPAF--EGYKPGEVR 554

Query: 2497 FRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDTFSRWESITKNHVASQAFTDPKDKIE 2318
            +++   +E W LPSAQ   GA+F+IP QL +F+DTF RWESITKN V+ Q FTDP DK+E
Sbjct: 555  YKAKDYSEWWNLPSAQHGTGAIFIIPTQLGMFNDTFMRWESITKNLVSQQGFTDPNDKVE 614

Query: 2317 YMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGREGTHNILSQMRRVFTSEDPTQGSTV 2138
            ++ENLLGE EKI WIQWRM+YP  ++ ++   DGR+GT NILSQ+ RVFT EDP QGST 
Sbjct: 615  FIENLLGEAEKIAWIQWRMTYPEAFQQMLESADGRQGTQNILSQIYRVFTLEDPYQGSTT 674

Query: 2137 IQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSGRLY 2024
            +Q+ A RDLEKLSC N+KDI+ YMN+Y+R+A KS RL+
Sbjct: 675  MQEEALRDLEKLSCHNLKDIVAYMNEYMRLACKSRRLF 712



 Score =  217 bits (552), Expect(2) = 7e-94
 Identities = 109/228 (47%), Positives = 146/228 (64%), Gaps = 7/228 (3%)
 Frame = -3

Query: 2014 KRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNIIRVA 1835
            K+Y +R S+T+KGKPH SHARIE+RKHL  NK+ KCYLCGQEGHFAR+CP++RR+I RVA
Sbjct: 791  KKYGVRRSRTYKGKPHASHARIERRKHLQRNKRCKCYLCGQEGHFARECPNDRRSIKRVA 850

Query: 1834 IFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDLQKAVYTLQLNDAIFMLGQLD-- 1661
            IFE LD+P+DCDI+SVQEG+ +SDAIY+ISEGEE  DL K++  + +++ ++   + D  
Sbjct: 851  IFENLDLPEDCDIVSVQEGDNESDAIYNISEGEEMEDLTKSLNVMSVSEHLYYFREEDQT 910

Query: 1660 -----EGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLVT 1496
                 EGY   +K ++ Q +C H W YN             CK       R+HC  CL+T
Sbjct: 911  YWIGGEGYRSMIKATKTQHDCNHVWEYN----GAGSFKCFCCKEETSVNYRMHCPQCLIT 966

Query: 1495 ACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGDRTPSK 1352
             CNL   YYF ++V           P  L+ EQ+ YI+WCE + T  K
Sbjct: 967  TCNLCALYYFGQKVPASRPNPIQYNPLSLMHEQQGYITWCEAEITRLK 1014



 Score =  160 bits (404), Expect(2) = 7e-94
 Identities = 80/146 (54%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIE--GPRLVKNMLYNLTIEIKIPRIPRFPLKAILDT 1096
            G  I EATN+  +  T ++ +  K E   P+  KNMLYNL +EI IP +  F + AILDT
Sbjct: 1053 GVVIQEATNVFRQIETQRILSIEKNELSPPKKTKNMLYNLILEINIPDVANFSVHAILDT 1112

Query: 1095 GATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSFP 916
            GA+TCC+  G+IP+ A+E + F+ + SGINS  +T  KL++G+M IGDN FRIPYTY FP
Sbjct: 1113 GASTCCINAGAIPENAVEESPFMASSSGINSKVSTNKKLRYGKMIIGDNAFRIPYTYVFP 1172

Query: 915  MILGDNI*MILGCNFIRAMHGGVRLQ 838
            M LGD+I MILGCNFIR+M GGVR++
Sbjct: 1173 MQLGDDIQMILGCNFIRSMQGGVRIE 1198


>gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]
          Length = 1881

 Score =  615 bits (1585), Expect = 0.0
 Identities = 332/666 (49%), Positives = 429/666 (64%), Gaps = 17/666 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            LFEDQ+ +YR+NQ RL N+Q+ATRR+   +T        TLEQ++DPQA LRLSMQERA 
Sbjct: 26   LFEDQVRDYRQNQRRLFNLQRATRRLRGSVTGRRYQD--TLEQEVDPQAALRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE++IL TDGNQ+DR FIQ  S ++L RS M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESILCTDGNQIDRTFIQPESLERLQRSGMAFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW GDQ+I A MEVDLT GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWEGDQSIFATMEVDLTHGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGY+ W NG ANLLITR + GR+SNTPNV  AY++  + DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYQNWQNGEANLLITRSMTGRLSNTPNVAFAYQISDVTDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G +Y    LQG  W LRPP+  I PMQP+ V +RNL+DG ISL F +Y AAP      
Sbjct: 264  IAGKKYDLRGLQGQQWVLRPPRANITPMQPNAVETRNLVDGSISLRFHNYEAAPTTSRPT 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ +EE     H +AA +    F    DN     + E +   +          
Sbjct: 324  YNEHDEEVESEEESELREHIVAAWVGPEEF---PDNTGRIKVWEESCNGNGRFYRYYTAP 380

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGGDNNNLDELIAT 2708
                              P  +  + P   +D EGS+E           D++    ++  
Sbjct: 381  PVYTGEVIATGWDDDETPPKWD--ECPDEKSDHEGSNE---------DDDDDPNTYMLRL 429

Query: 2707 GMEYPCLHKLLQEVEDK----NNKQQVYST---------STVISPYRPPENTAMGQPGYP 2567
             +E     ++  EV ++      ++  Y T         S+ +  Y PP +T M   GYP
Sbjct: 430  QLEEESWREIETEVRNEIIAGGKEELEYPTRGPTTEVVLSSEVVDYNPPADTLMTPVGYP 489

Query: 2566 PAR-GDPG--PSRPPLTQEQHHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDD 2396
            PA    P   P+RPPL +       +F++   +E W LPS+Q   GAMFV+P Q+ +F D
Sbjct: 490  PASIAGPSNRPARPPLFEGYSPQVPKFKAEKYSEWWQLPSSQGTTGAMFVMPRQIGMFHD 549

Query: 2395 TFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDG 2216
             FSRWESITKN+VA+Q FTD  +K E++ENLLGE EK+TWIQWRM+Y  EY+ L+   DG
Sbjct: 550  VFSRWESITKNYVAAQGFTDTTEKAEFIENLLGETEKLTWIQWRMNYAQEYQQLLTQSDG 609

Query: 2215 REGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKS 2036
            R+GT NILSQM+RVF+ EDP  GST +QD AYRDLE+LSC+N+KDII+++NDY R+AAKS
Sbjct: 610  RQGTQNILSQMKRVFSLEDPASGSTRVQDDAYRDLERLSCNNIKDIIQFLNDYGRLAAKS 669

Query: 2035 GRLYAG 2018
            GR++ G
Sbjct: 670  GRMFVG 675



 Score =  206 bits (523), Expect = 2e-49
 Identities = 108/226 (47%), Positives = 144/226 (63%), Gaps = 6/226 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y   ++Y IR SK++KGKPHE+HARIEKRKHL+ NK+ KCYLCG+EGHFAR+CP+ +R++
Sbjct: 748  YDKTRKYGIRKSKSYKGKPHETHARIEKRKHLVRNKRCKCYLCGEEGHFARECPNSKRDV 807

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDLQ------KAVYTLQLNDA 1685
             RVAIFE +DIP+D DI+SV EGE +SDAIYSISE  E+NDL       +  Y  +  D 
Sbjct: 808  RRVAIFEGVDIPEDYDIISVDEGEPESDAIYSISE-NENNDLAEEEWPVERAYMFREVDQ 866

Query: 1684 IFMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTC 1505
             + LG+ +  +   VKV+ +Q NC H W +N+ I          CK+  +QR+RIHC  C
Sbjct: 867  TYWLGKKNH-WTAMVKVTAQQYNCMHHWEHNQEIKETAYLKCYFCKQQTMQRSRIHCPRC 925

Query: 1504 LVTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
             +TAC +  P Y N  V           P  LL+EQ+ YI W E +
Sbjct: 926  TLTACFMCAPIYCNTTVQKTERSAIPYNPHALLQEQQGYIQWLEAE 971



 Score =  141 bits (355), Expect = 1e-29
 Identities = 76/144 (52%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
 Frame = -1

Query: 1257 DEATNMLLEDTTCKLTA-AHKIEGPRLVKNMLYNLTIEIKIPRIPR-FPLKAILDTGATT 1084
            DE    L ED   K+T   H+     +  NMLYN+ + + IP + R   +KAILDTGATT
Sbjct: 1018 DETIAYLEEDV--KITGHGHEQVAKPVRGNMLYNMDVILNIPDVGRSIKVKAILDTGATT 1075

Query: 1083 CCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSFPMILG 904
            CC+   S+PK A+E NTF+V+F GINS QT   KLK G+M I  + FRIPY Y+FP+ LG
Sbjct: 1076 CCINIDSVPKSAIEQNTFLVHFKGINSSQTVDKKLKFGKMLISGHHFRIPYCYAFPLKLG 1135

Query: 903  DNI*MILGCNFIRAMHGGVRLQFT 832
            D I MILGCNFIR M+GG+R++ T
Sbjct: 1136 DGIEMILGCNFIRGMYGGLRIEGT 1159


>gb|ASG91859.1| polyprotein [Cacao swollen shoot virus]
          Length = 1592

 Score =  605 bits (1561), Expect = 0.0
 Identities = 328/670 (48%), Positives = 422/670 (62%), Gaps = 19/670 (2%)
 Frame = -3

Query: 3970 RTLFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQER 3791
            R L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQER
Sbjct: 24   RPLYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQER 81

Query: 3790 ASMVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIH 3611
            A +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH
Sbjct: 82   ARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIH 141

Query: 3610 LGILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTI 3431
            +GILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TI
Sbjct: 142  IGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTI 201

Query: 3430 GDFFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGI 3251
            GDF RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG+
Sbjct: 202  GDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGV 261

Query: 3250 QALPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRP 3074
            +A+ G +     L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA     
Sbjct: 262  KAIAGKKMDLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSR 321

Query: 3073 AQFNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXX 2894
              +N  DEE++ + E     HT+A  + E       D      + E +   +        
Sbjct: 322  PHYNEEDEEVESETESEIREHTVAVWIGEEE---VPDQTGRKKVWEESSNGNGRFFRYYT 378

Query: 2893 XXXXXXXXXXXXXLAS-----------LSKQPTTNSGDSPIWDTDSEGSSEF-TNPFATK 2750
                           S             + P       PIWD + E   E+  N +   
Sbjct: 379  PPPTSDEQIIATGWGSDDDYDDKIPPKWDESPDEEGSSEPIWDQEEEEEDEYDPNIYMAY 438

Query: 2749 GGGDNNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGY 2570
               + +   E+ A+  E         E+E    + Q  +  +    Y PP +T M   GY
Sbjct: 439  LQKEEDEWQEIAASLQEE-------MEMEYPRRRPQTETVFSETVDYTPPGDTMMTPVGY 491

Query: 2569 PPARGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLE 2408
            PPA         PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ 
Sbjct: 492  PPASTSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMG 550

Query: 2407 LFDDTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVN 2228
            LF D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+ 
Sbjct: 551  LFHDVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLT 610

Query: 2227 IGDGREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRI 2048
              DGR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+
Sbjct: 611  QADGRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRL 670

Query: 2047 AAKSGRLYAG 2018
            AAKSGRL+ G
Sbjct: 671  AAKSGRLFLG 680



 Score =  197 bits (500), Expect = 9e-47
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 753  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 812

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 813  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 872

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 873  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 931

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 932  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 976



 Score =  150 bits (379), Expect = 2e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1026 GPSDDEQIAYLEEDTVSRIIG-HTVEEQQEVKKPVKKGNMLYNLDVVLLIPEVGRPIKVK 1084

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1085 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1144

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1145 CYAFPLSLGDGIXMILGCNFIRGMYGGLRIE 1175


>gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  608 bits (1568), Expect = 0.0
 Identities = 328/667 (49%), Positives = 421/667 (63%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA  I    
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAATSISRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E       D      + E +   +          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGEEE---VPDQTGRKKVWEESSNGNGRFFRYYTPP 380

Query: 2887 XXXXXXXXXXXLAS-----------LSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGG 2741
                         S             K P       PIWD + E      N +      
Sbjct: 381  PTSDEQIIATGWGSDDDHDDEIPPKWDKSPDEEGSSEPIWDQEEEEDEYDPNIYMAYLQK 440

Query: 2740 DNNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPPA 2561
            + +   E+ A+  E         E+E    + Q  +  +    Y PP +T M   GYPPA
Sbjct: 441  EEDEWQEITASLQEE-------MEMEYPRRRPQTETVFSETVDYTPPGDTMMTPVGYPPA 493

Query: 2560 RGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
                     PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 494  SSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFH 552

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   D
Sbjct: 553  DVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQSD 612

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 613  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 672

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 673  SGRLFLG 679



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 752  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 811

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 812  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 871

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 872  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 930

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 931  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 975



 Score =  152 bits (383), Expect = 6e-33
 Identities = 80/147 (54%), Positives = 102/147 (69%), Gaps = 7/147 (4%)
 Frame = -1

Query: 1257 DEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLKAILD 1099
            DE T  L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +KAILD
Sbjct: 1029 DELTAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVKAILD 1087

Query: 1098 TGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSF 919
            TGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY Y+F
Sbjct: 1088 TGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAF 1147

Query: 918  PMILGDNI*MILGCNFIRAMHGGVRLQ 838
            P+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1148 PLSLGDGIEMILGCNFIRGMYGGLRIE 1174


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  605 bits (1561), Expect = 0.0
 Identities = 327/665 (49%), Positives = 423/665 (63%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR Q R+ N+Q+  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRGQRRIFNLQRRARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   G+Q+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSASRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HTIA  + E    + D    +    E++  +           
Sbjct: 324  YNEEDEEVESETESEIREHTIAVWIGEEE--IPDQTGKKKVWEESSNGNGRFFWYYTPPP 381

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGD---------SPIWDTDSEGSSEFTNPFATKGGGDN 2735
                        +    + T    D          PIWD + E      N +      + 
Sbjct: 382  TFEGQIIATGWGSDNDDEKTPPKWDESSDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEE 441

Query: 2734 NNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPPARG 2555
            +   E+ A+         L +E+E    + Q  +  +    Y PP +T M   GYPPA  
Sbjct: 442  DEWQEITAS---------LREEMEYPKRRPQTETAFSETVDYTPPGDTMMTPVGYPPASS 492

Query: 2554 DPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
                   PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF + 
Sbjct: 493  SRSTVTTPSRPPLFEGRTTHVPRFLKRDEY-TEWWQLPSSQGTTGALFVMPKQMGLFHEV 551

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 552  FSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGR 611

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 612  QGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 671

Query: 2032 RLYAG 2018
            RL+ G
Sbjct: 672  RLFLG 676



 Score =  197 bits (501), Expect = 8e-47
 Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 4/222 (1%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R S+T+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP++RR++
Sbjct: 749  YDKTSKYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDV 808

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISE---GEEDND-LQKAVYTLQLNDAIF 1679
             RVAIFE +D+P+  DI+SV+EGE +SDAIYSISE   GE D + + + V+ ++  D  +
Sbjct: 809  KRVAIFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEAVHEKVFVMREEDQSY 868

Query: 1678 MLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLV 1499
             LG+ +  +   V+VS +Q +C H W +N+ I          CK+    R+RIHC TC +
Sbjct: 869  WLGKTNH-WTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQL 927

Query: 1498 TACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCE 1373
            T+C +  P Y N  V              LL++Q  YI W E
Sbjct: 928  TSCFMCAPIYCNIMVQQQPKPPVPFNSHTLLQQQAAYIQWLE 969



 Score =  147 bits (371), Expect = 2e-31
 Identities = 77/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
 Frame = -1

Query: 1257 DEATNMLLEDTTCKLTAAHKIEGPRLVK-----NMLYNLTIEIKIPRIPR-FPLKAILDT 1096
            D+ T  L EDT  ++   H +E   + K     NMLYNL + + IP + R   +KAILDT
Sbjct: 1024 DQYTAYLEEDTISRVIG-HTVEQQEVRKPVKKGNMLYNLDVVLHIPEVGRPIKVKAILDT 1082

Query: 1095 GATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSFP 916
            GATTCC+   S+P+ A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY Y+FP
Sbjct: 1083 GATTCCININSVPQTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFP 1142

Query: 915  MILGDNI*MILGCNFIRAMHGGVRLQ 838
            + LGD I MILGCNFIR M+GG+R++
Sbjct: 1143 LSLGDGIEMILGCNFIRGMYGGLRIE 1168


>gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  605 bits (1561), Expect = 0.0
 Identities = 326/667 (48%), Positives = 421/667 (63%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L  DGNQ+DR FIQ  S +QL ++ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVDGNQVDRAFIQPESLEQLQKTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAATSXSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E       D      + E +   +          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGEEE---VPDQIGRKKVWEESSNGNGRFFRYYTPP 380

Query: 2887 XXXXXXXXXXXLAS-----------LSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGG 2741
                         S             + P       PIWD + E      N +      
Sbjct: 381  PTSDEQIIATGWGSDDDYDDEIPPKWDESPDKEGSSEPIWDQEEEEDEYDPNIYMAYLQK 440

Query: 2740 DNNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPPA 2561
            + +   E+ A+  E         E+E    + Q  +  +    Y PP +T M   GYPPA
Sbjct: 441  EEDEWQEIAASLQEE-------MEMEYPRRRPQTETVFSETVDYTPPSDTMMTPVGYPPA 493

Query: 2560 RGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
                     PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 494  SSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFY 552

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   D
Sbjct: 553  DVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQAD 612

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 613  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 672

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 673  SGRLFLG 679



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 752  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 811

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 812  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 871

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 872  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 930

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 931  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 975



 Score =  151 bits (381), Expect = 1e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1025 GPSDDEQIGYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1083

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1084 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSMQSVDKKLKYGRMTISNHQFRIPY 1143

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1144 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1174


>gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  605 bits (1561), Expect = 0.0
 Identities = 332/665 (49%), Positives = 423/665 (63%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ + +T        TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRLRRSMTGSRYQ--ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E      ++ P +    +     S          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGE------EEVPDQTGRKKVWEESSNGNGRFYRYY 377

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWD--TDSEGSSEFTNPFATKGGGD----NNNL 2726
                                 +    P WD   D EGSS+       K   D    N  +
Sbjct: 378  TPPPTSDEQIIATGWGSDDDYDDEIPPKWDESPDEEGSSKTIWDQEEKEEEDEYDPNIYM 437

Query: 2725 DELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYPPARG 2555
              L     E+  +   LQE  +    ++   T TV S    Y PP +T M   GYPPA  
Sbjct: 438  AYLQKEEDEWQEIAASLQEEMEMEYPRRRPQTETVFSETVDYTPPGDTLMTPVGYPPASS 497

Query: 2554 DPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
                   PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF D 
Sbjct: 498  SRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQIGLFHDV 556

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 557  FSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGR 616

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 617  QGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 676

Query: 2032 RLYAG 2018
            RL+ G
Sbjct: 677  RLFLG 681



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 754  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 813

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 814  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 873

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 874  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 932

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 933  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 977



 Score =  152 bits (385), Expect = 4e-33
 Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE T  L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1027 GPSDDEQTAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1085

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1086 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1145

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1146 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1176


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  605 bits (1560), Expect = 0.0
 Identities = 323/667 (48%), Positives = 420/667 (62%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ + +T        TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRRARRLRRSMTGSRYQ--ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLL+TR + GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLVTRSMTGRLSNTPNVAFAYQISSATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGRKVNLQHLRNQQWVLRPPQANITPMQPRSVETRNLIDGSISIRFHDYEAAVSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E    + D    +    E++  +           
Sbjct: 324  YNEEDEEVESETESEIRGHTVAVWIGEEE--VPDQTGRKKVWEESSNGNGRFFRYYTPPP 381

Query: 2887 XXXXXXXXXXXLASL----------SKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGGD 2738
                        + +           + P       PIWD + E      N +  +   +
Sbjct: 382  TSNEQIIATGWGSDIEDDDELPPEWDESPDEEGPSEPIWDQEEEEDEYDPNIYMAQLQKE 441

Query: 2737 NNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYP 2567
             +   E+ AT          LQE  +    ++   T TV S    Y PP +T M   GYP
Sbjct: 442  EDEWLEIAAT----------LQEEREMEYPRRRPQTETVFSETVDYTPPTDTMMTPVGYP 491

Query: 2566 PARGDPG----PSRPPLTQEQHHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
            PA          SRPPL + +      F+     E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 492  PASSSRSTVTTSSRPPLFEGRTTHVPSFKRDNYTEWWQLPSSQGTTGALFVMPKQMGLFH 551

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            + FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRMSY AEY+ L+   D
Sbjct: 552  EVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMSYEAEYQQLLTQAD 611

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 612  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 671

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 672  SGRLFLG 678



 Score =  197 bits (502), Expect = 6e-47
 Identities = 99/220 (45%), Positives = 138/220 (62%), Gaps = 5/220 (2%)
 Frame = -3

Query: 2011 RYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNIIRVAI 1832
            +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFA++CP+ +R++ RVAI
Sbjct: 756  KYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFAKECPNNKRDVKRVAI 815

Query: 1831 FEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAIFMLGQ 1667
            FE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ ++ ++  D  + LG+
Sbjct: 816  FEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKIFMMKEEDQSYWLGK 875

Query: 1666 LDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLVTACN 1487
             +  +   V+VS +Q +C H W +N+ I          CK+    R+RIHC TC +T+C 
Sbjct: 876  TNH-WTAMVRVSSQQYHCMHQWEHNKEIMVVAHINCHFCKQPTQLRSRIHCPTCKLTSCF 934

Query: 1486 LYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +  P Y N  V              LL++Q  YI W EG+
Sbjct: 935  MCAPIYCNTTVQQQPKPPAPFNTNTLLQQQAAYIQWLEGE 974



 Score =  153 bits (387), Expect = 2e-33
 Identities = 81/148 (54%), Positives = 103/148 (69%), Gaps = 6/148 (4%)
 Frame = -1

Query: 1263 EIDEATNMLLEDTTCKL---TAAHKIEGPRLVK--NMLYNLTIEIKIPRIPR-FPLKAIL 1102
            E  E T  L EDT C++   T   + E  + VK  NMLYNL + + IP + R   +KAIL
Sbjct: 1020 ESSEHTAYLEEDTVCRIIGHTTEEQKEVTKPVKRGNMLYNLDVVLHIPEVGRPIKVKAIL 1079

Query: 1101 DTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYS 922
            DTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY Y+
Sbjct: 1080 DTGATTCCINVNSVPKTAIEQNTFLVQFRGINSTQSVDQKLKYGRMTISNHQFRIPYCYA 1139

Query: 921  FPMILGDNI*MILGCNFIRAMHGGVRLQ 838
            FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1140 FPLSLGDGIEMILGCNFIRGMYGGLRIE 1167


>gb|ASG91891.1| polyprotein [Cacao swollen shoot virus]
          Length = 1843

 Score =  605 bits (1560), Expect = 0.0
 Identities = 326/665 (49%), Positives = 420/665 (63%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL ++ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQKTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E       D      + E +   +          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGEEE---VPDQIGRKKVWEESSNGNGRFFRYYTPP 380

Query: 2887 XXXXXXXXXXXLAS---------LSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGGDN 2735
                         S           + P       PIWD + E      N +      + 
Sbjct: 381  PTSDEQIIATGWGSDDDDEIPPKWDESPDEEGSSEPIWDQEEEEDEYDPNIYMAYLQKEE 440

Query: 2734 NNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPPARG 2555
            +   E+ A+  E         E+E    + Q  +  +    Y PP +T M   GYPPA  
Sbjct: 441  DEWQEIAASLQEE-------MEMEYPRRRPQTETVFSETVDYTPPSDTMMTPVGYPPASS 493

Query: 2554 DPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
                   PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF D 
Sbjct: 494  SRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFYDV 552

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 553  FSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGR 612

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 613  QGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 672

Query: 2032 RLYAG 2018
            RL+ G
Sbjct: 673  RLFLG 677



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 750  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 809

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 810  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 869

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 870  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 928

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 929  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 973



 Score =  150 bits (379), Expect = 2e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1023 GPSDDEQIAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1081

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1082 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSMQSVDKKLKYGRMTISNHQFRIPY 1141

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1142 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1172


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  604 bits (1558), Expect = 0.0
 Identities = 336/667 (50%), Positives = 430/667 (64%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRRARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E      ++ P +   T    +  E+        
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGE------EEVPDQ---TGRKKVWEESSNGNGRFF 374

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDS--PIWD--TDSEGSSEFTNPFATKGGGD----NN 2732
                           +   + +  D   P WD   D EGSSE T     K   D    N 
Sbjct: 375  RYYTPPPTSDEQIIATGWGSDDDYDEIPPKWDESPDEEGSSETTWDQEEKEEEDEYDPNI 434

Query: 2731 NLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYPPA 2561
             +  L     E+  +   LQE  +    ++   T TV S    Y PP +T M   GYPPA
Sbjct: 435  YMAYLQKEENEWQEIAASLQEEMEMEYPRRRPRTETVFSETVDYTPPGDTLMTPVGYPPA 494

Query: 2560 RGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
                     PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 495  SSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFH 553

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            + FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   D
Sbjct: 554  EVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQAD 613

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 614  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 673

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 674  SGRLFLG 680



 Score =  199 bits (505), Expect = 3e-47
 Identities = 103/225 (45%), Positives = 139/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHARIEKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 753  YDKTPKYGMRKSKTYKGKPHASHARIEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 812

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 813  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 872

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q +C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 873  YWLGKTNH-WTAMVRVSSQQYHCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCSTCK 931

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 932  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 976



 Score =  152 bits (385), Expect = 4e-33
 Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE T  L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1026 GPSDDEQTAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1084

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1085 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1144

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1145 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1175


>gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]
          Length = 1846

 Score =  605 bits (1559), Expect = 0.0
 Identities = 328/668 (49%), Positives = 422/668 (63%), Gaps = 19/668 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G R +   L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKRMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E       D      + E +   +          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGEEE---VPDQTGRKKVWEESSNGNGRFFRYYTHP 380

Query: 2887 XXXXXXXXXXXLAS-----------LSKQPTTNSGDSPIWDTDSEGSSEF-TNPFATKGG 2744
                         S             + P       PIWD + E   E+  N +     
Sbjct: 381  LTSDEQIIATGWGSDDDYDDEIPPKWDENPDEEISSEPIWDQEEEEEDEYDPNIYMAYLQ 440

Query: 2743 GDNNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPP 2564
             + +   E+ A+  E         E+E    + Q  +  +    Y PP +T M   GYPP
Sbjct: 441  KEEDEWQEIAASLQEE-------MEMEYPRRRPQTETVFSETVDYTPPGDTLMTPVGYPP 493

Query: 2563 ARGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELF 2402
            A         PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF
Sbjct: 494  ASTSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLF 552

Query: 2401 DDTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIG 2222
             D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   
Sbjct: 553  HDVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQA 612

Query: 2221 DGREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAA 2042
            DGR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AA
Sbjct: 613  DGRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAA 672

Query: 2041 KSGRLYAG 2018
            KSGRL+ G
Sbjct: 673  KSGRLFLG 680



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 753  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 812

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 813  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 872

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 873  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 931

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 932  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 976



 Score =  152 bits (385), Expect = 4e-33
 Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE T  L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1026 GPSDDEQTAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1084

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1085 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1144

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1145 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1175


>gb|ASG91880.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  605 bits (1559), Expect = 0.0
 Identities = 331/670 (49%), Positives = 422/670 (62%), Gaps = 21/670 (3%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E       D      + E +   +          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGEEE---VPDQTGRKKVWEESSNGNGRFFRYYTHP 380

Query: 2887 XXXXXXXXXXXLAS-----------LSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGG 2741
                         S             + P       PIWD + E   +  +P       
Sbjct: 381  LTSDEQIIATGWGSDDDYDDEIPPKWDESPDEERSSEPIWDQEEEEEEDEYDP------- 433

Query: 2740 DNNNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGY 2570
             N  +  L     E+  +   LQE  +    ++   T TV S    Y PP +T M   GY
Sbjct: 434  -NIYMAYLQKEEDEWQEIAASLQEEMEMEYPRRRPQTETVFSETVDYTPPXDTMMTPVGY 492

Query: 2569 PPARGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLE 2408
            PPA         PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q  
Sbjct: 493  PPASSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTXGALFVMPKQXG 551

Query: 2407 LFDDTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVN 2228
            LF D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+ 
Sbjct: 552  LFHDVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLT 611

Query: 2227 IGDGREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRI 2048
              DGR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+
Sbjct: 612  QADGRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRL 671

Query: 2047 AAKSGRLYAG 2018
            AAKSGRL+ G
Sbjct: 672  AAKSGRLFLG 681



 Score =  196 bits (499), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 754  YDKTPKYGMRKSKTYKGKPHVSHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 813

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 814  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 873

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 874  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 932

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 933  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 977



 Score =  152 bits (384), Expect = 5e-33
 Identities = 81/151 (53%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE T  L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1027 GPSDDEQTAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLFIPEVGRPIKVK 1085

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1086 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1145

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1146 CYAFPLSLGDEIEMILGCNFIRGMYGGLRIE 1176


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  604 bits (1558), Expect = 0.0
 Identities = 334/665 (50%), Positives = 424/665 (63%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E      ++ P +    +     S          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGE------EEVPDQTGRKKVWEESSNGNGRFFRYY 377

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWD--TDSEGSSEFTNPFATKGGGD----NNNL 2726
                                      P WD   D EGSS+ T     K   D    N   
Sbjct: 378  TPPPTSDEQIIATGWGSDDDYEDEIPPKWDESPDEEGSSKTTWDQEEKEEEDEYDPNIYR 437

Query: 2725 DELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYPPARG 2555
              L     E+  +   LQE  +    ++   T TV S    Y PP +T M   GYPPA  
Sbjct: 438  AYLQKEEDEWQEIAASLQEEMEMEYPRRRPQTETVFSETVDYTPPGDTLMTPVGYPPASS 497

Query: 2554 DPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
                   PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF D 
Sbjct: 498  SRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQIGLFHDV 556

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWESITKN+VA+Q+FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 557  FSRWESITKNYVAAQSFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGR 616

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 617  QGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 676

Query: 2032 RLYAG 2018
            RL+ G
Sbjct: 677  RLFLG 681



 Score =  197 bits (500), Expect = 1e-46
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 754  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 813

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 814  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 873

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 874  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 932

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 933  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 977



 Score =  150 bits (379), Expect = 2e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1027 GPSDDEQIAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1085

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1086 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1145

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1146 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1176


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
 gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  604 bits (1557), Expect = 0.0
 Identities = 325/665 (48%), Positives = 421/665 (63%), Gaps = 16/665 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRGQRRIFNLRRRARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   G+Q+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPPQ  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDYEAATSASRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSE--------- 2915
            +N  DEE++ + E     HTIA  + E    + D    +    E++  +           
Sbjct: 324  YNEEDEEVESETESEIREHTIAVWIGEEE--IPDQTGRKKVWEESSNGNGRFFRYYTPPP 381

Query: 2914 TXXXXXXXXXXXXXXXXXXXLASLSKQPTTNSGDSPIWDTDSEGSSEFTNPFATKGGGDN 2735
            T                        + P       PIWD + E      N +      + 
Sbjct: 382  TFEGQIIATGWGSDDDNEKTPPKWDESPDEEGPTEPIWDQEEEEDEYDPNVYRAYLQKEE 441

Query: 2734 NNLDELIATGMEYPCLHKLLQEVEDKNNKQQVYSTSTVISPYRPPENTAMGQPGYPPARG 2555
            +   E+ A+         L +E+E    + Q     +    Y PP +T M   GYPPA  
Sbjct: 442  DEWQEITAS---------LREEMEYPKRRPQTEMAFSETVDYTPPGDTMMTPVGYPPASS 492

Query: 2554 DPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFDDT 2393
                   PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF + 
Sbjct: 493  SRSTVTTPSRPPLFEGRTTHVPRFLKRDEY-TEWWQLPSSQGTTGALFVMPKQMGLFHEV 551

Query: 2392 FSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGDGR 2213
            FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   DGR
Sbjct: 552  FSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGR 611

Query: 2212 EGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAKSG 2033
            +GT NILSQ++R+F+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAKSG
Sbjct: 612  QGTQNILSQIKRIFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSG 671

Query: 2032 RLYAG 2018
            RL+ G
Sbjct: 672  RLFLG 676



 Score =  197 bits (500), Expect = 1e-46
 Identities = 103/226 (45%), Positives = 139/226 (61%), Gaps = 8/226 (3%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R S+T+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP++RR++
Sbjct: 749  YDKTSKYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDV 808

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDLQKAVYTLQLNDAIFMLGQ 1667
             RVAIFE +D+P+  DI+SV+EGE +SDAIYSISE  ED +L   V    +++ +FM+ +
Sbjct: 809  KRVAIFEGIDLPEGFDIVSVEEGEEESDAIYSISE-NEDGELDTEV----VHEKVFMMRE 863

Query: 1666 LDEGY--------HPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCL 1511
             D+ Y           V+VS +Q +C H W +N+ I          CK+    R+RIHC 
Sbjct: 864  EDQSYWLGKTNHWTAMVRVSSQQYHCMHQWEHNKEILVVAHINCHFCKQPTQLRSRIHCP 923

Query: 1510 TCLVTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCE 1373
            TC +T+C +  P Y N  V              LL++Q  YI W E
Sbjct: 924  TCQLTSCFMCAPIYCNMIVQQQPKPPVPFNTHTLLQQQAAYIQWLE 969



 Score =  147 bits (371), Expect = 2e-31
 Identities = 77/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
 Frame = -1

Query: 1257 DEATNMLLEDTTCKLTAAHKIEGPRLVK-----NMLYNLTIEIKIPRIPR-FPLKAILDT 1096
            D+ T  L EDT  ++   H +E   + K     NMLYNL + + IP + R   +KAILDT
Sbjct: 1021 DQHTAYLEEDTISRVIG-HTVEQQEVRKPVKKGNMLYNLDVVLHIPEVGRPIKVKAILDT 1079

Query: 1095 GATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPYTYSFP 916
            GATTCC+   S+P+ A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY Y+FP
Sbjct: 1080 GATTCCININSVPQTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFP 1139

Query: 915  MILGDNI*MILGCNFIRAMHGGVRLQ 838
            + LGD I MILGCNFIR M+GG+R++
Sbjct: 1140 LSLGDGIEMILGCNFIRGMYGGLRIE 1165


>gb|ASG91869.1| polyprotein [Cacao swollen shoot virus]
          Length = 1846

 Score =  604 bits (1557), Expect = 0.0
 Identities = 333/667 (49%), Positives = 426/667 (63%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAAISTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E      ++ P +    +     S          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVGIGE------EEVPDQTGRKKVWEESSNGNGRFFRYY 377

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWD--TDSEGSSEFTNPFATKGGGDNNNLDELI 2714
                                 +   SP WD   D EGSSE   P   +   + +  D  I
Sbjct: 378  TPPPTSDEQIIATGWGSDDDYDDEISPKWDESPDEEGSSE---PIWDQEEEEEDEYDPNI 434

Query: 2713 ATGM------EYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYPPA 2561
                      E+  +   LQE  +    ++   T TV S    Y PP +T M   GYPPA
Sbjct: 435  YMAYLQKEEDEWQEIAAGLQEETEMEYPRRRPQTETVFSETVDYTPPGDTMMTPVGYPPA 494

Query: 2560 RGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
                     PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 495  SSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFH 553

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   D
Sbjct: 554  DVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQSD 613

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 614  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 673

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 674  SGRLFLG 680



 Score =  198 bits (503), Expect = 5e-47
 Identities = 103/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    RY +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 753  YDKTPRYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 812

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 813  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQS 872

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 873  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 931

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 932  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 976



 Score =  150 bits (379), Expect = 2e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1026 GPSDDEQIAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1084

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1085 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1144

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1145 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1175


>gb|ASG91886.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  603 bits (1554), Expect = 0.0
 Identities = 331/667 (49%), Positives = 425/667 (63%), Gaps = 18/667 (2%)
 Frame = -3

Query: 3964 LFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAPIHTLEQQIDPQAQLRLSMQERAS 3785
            L+EDQI +YRR+Q R+ N+++  RR+ +R   G+     TLEQ+IDPQ  LRLSMQERA 
Sbjct: 26   LYEDQIRDYRRSQRRIFNLRRNARRL-RRSMMGSRYQ-ETLEQEIDPQTTLRLSMQERAR 83

Query: 3784 MVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RSRMQYIHLG 3605
            +VPAEVLY S RD  HHRVY HRSE+++L   GNQ+DR FIQ  S +QL R+ M +IH+G
Sbjct: 84   LVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIG 143

Query: 3604 ILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIPDIMLTIGD 3425
            ILQVRIQ LH QE GTMAL+VFRDNRW+GDQ+I A ME+DLT+GSQLV+VIPD M+TIGD
Sbjct: 144  ILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGD 203

Query: 3424 FFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDYLLSHGIQA 3245
            F RN+QL+ILTRGYE W NG ANLLITRG+ GR+SNTPNV  AY++    DYL SHG++A
Sbjct: 204  FARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKA 263

Query: 3244 LPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSAAPIIRPAQ 3068
            + G + +   L+   W LRPP+  I PMQP  V +RNL+DG IS+ F DY AA       
Sbjct: 264  IAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPH 323

Query: 3067 FNARDEEIDQDEEKLRSSHTIAALLHEYTFILTDDNPTEAPITETTMLHSETXXXXXXXX 2888
            +N  DEE++ + E     HT+A  + E      ++ P +    +     S          
Sbjct: 324  YNEEDEEVESETESEIREHTVAVWIGE------EEVPDQTGRKKVWEESSNGNGRFFRYY 377

Query: 2887 XXXXXXXXXXXLASLSKQPTTNSGDSPIWD--TDSEGSSEFTNPFATKGGGDNNNLDELI 2714
                                 +    P WD   D EGSSE    +  +   + +  D  I
Sbjct: 378  TPPPTSDEQIIATGWGSDDDYDDEIPPKWDESPDEEGSSELI--WGQEEEEEEDEYDPNI 435

Query: 2713 ATGM------EYPCLHKLLQEVEDKNNKQQVYSTSTVIS---PYRPPENTAMGQPGYPPA 2561
                      E+  +   LQE  +    ++   T TV S    Y PP +T M   GYPPA
Sbjct: 436  YMAYLQKEEDEWQEIAASLQEEMEMEYPRRRPQTETVFSETVDYTPPGDTMMTPVGYPPA 495

Query: 2560 RGDPG----PSRPPLTQEQ--HHPRTRFRSGFNNEMWTLPSAQQQGGAMFVIPEQLELFD 2399
                     PSRPPL + +  H PR   R  +  E W LPS+Q   GA+FV+P+Q+ LF 
Sbjct: 496  SSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDY-TEWWQLPSSQGTTGALFVMPKQMGLFH 554

Query: 2398 DTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMSYPAEYEALVNIGD 2219
            D FSRWESITKN+VA+Q FTDP +K+E+MENLLGE EK+TWIQWRM+Y AEY+ L+   D
Sbjct: 555  DVFSRWESITKNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQAD 614

Query: 2218 GREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDIIRYMNDYLRIAAK 2039
            GR+GT NILSQ++RVF+ EDP  GST IQD AYRDLE+L+C N+KDI++++NDY R+AAK
Sbjct: 615  GRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAK 674

Query: 2038 SGRLYAG 2018
            SGRL+ G
Sbjct: 675  SGRLFLG 681



 Score =  197 bits (501), Expect = 8e-47
 Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R SKT+KGKPH SHAR+EKRKHLI NKK KCYLCG EGHFAR+CP+ +R++
Sbjct: 754  YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV 813

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEEDNDL-----QKAVYTLQLNDAI 1682
             RVAIFE +++P+  DI+SV+EGE  SDAIYSISE E   +L     Q+ V+ ++  D  
Sbjct: 814  KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQT 873

Query: 1681 FMLGQLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCL 1502
            + LG+ +  +   V+VS +Q  C H W +N+ I          CK+    R+RIHC TC 
Sbjct: 874  YWLGKTNH-WTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCK 932

Query: 1501 VTACNLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCEGD 1367
            +T+C +  P Y N  V              LL++Q  YI W EG+
Sbjct: 933  LTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGE 977



 Score =  150 bits (379), Expect = 2e-32
 Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 7/151 (4%)
 Frame = -1

Query: 1269 GKEIDEATNMLLEDTTCKLTAAHKIEGPRLVK------NMLYNLTIEIKIPRIPR-FPLK 1111
            G   DE    L EDT  ++   H +E  + VK      NMLYNL + + IP + R   +K
Sbjct: 1027 GPSDDEQIAYLEEDTVSRIIG-HTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVK 1085

Query: 1110 AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS*QTTRMKLKHGRMTIGDNIFRIPY 931
            AILDTGATTCC+   S+PK A+E NTF+V F GINS Q+   KLK+GRMTI ++ FRIPY
Sbjct: 1086 AILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPY 1145

Query: 930  TYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
             Y+FP+ LGD I MILGCNFIR M+GG+R++
Sbjct: 1146 CYAFPLSLGDGIEMILGCNFIRGMYGGLRIE 1176


>gb|ATZ69463.1| ORF3 polyprotein [Cacao swollen shoot CE virus]
          Length = 1822

 Score =  601 bits (1550), Expect = e-180
 Identities = 320/678 (47%), Positives = 427/678 (62%), Gaps = 27/678 (3%)
 Frame = -3

Query: 3976 SVRTLFEDQIWEYRRNQMRLHNIQQATRRISQRITKGTTAP----IHTLEQQIDPQAQLR 3809
            + + L+EDQI +YRR Q R+HN+ +  RR+ + ++   TA       TLEQ+IDPQ  LR
Sbjct: 25   TAQPLYEDQIRDYRRGQRRMHNLSRGMRRLRRSVSHSPTARGGRYQDTLEQEIDPQTTLR 84

Query: 3808 LSMQERASMVPAEVLYHSWRDDTHHRVYIHRSEKAILVTDGNQMDRMFIQESSYKQL*RS 3629
            LSMQERA +VPAEVLY S RD  HHRVY HRSE++IL  +GNQ+DR FIQ  SY+QL R+
Sbjct: 85   LSMQERARIVPAEVLYRSRRDTVHHRVYTHRSEESILCIEGNQIDRTFIQPESYEQLQRA 144

Query: 3628 RMQYIHLGILQVRIQTLHGQEAGTMALIVFRDNRWNGDQAILAVMEVDLTRGSQLVYVIP 3449
               ++H+GILQVRIQ LH QE GTMAL+VFRDNRW GDQ+I A ME+DLT+GSQLVYVIP
Sbjct: 145  GFAFVHIGILQVRIQILHRQEEGTMALVVFRDNRWTGDQSIFAQMEIDLTKGSQLVYVIP 204

Query: 3448 DIMLTIGDFFRNIQLAILTRGYEQWHNGNANLLITRGLVGRISNTPNVGIAYEVHGIVDY 3269
            D M+TIGDF RN+Q++ILTRGYE W NG ANLLITR + GR+SNTPNV  AY++ G  DY
Sbjct: 205  DTMMTIGDFARNVQISILTRGYENWQNGEANLLITRAMTGRLSNTPNVAFAYQIEGATDY 264

Query: 3268 LLSHGIQALPGLRYSTASLQGLNWTLRPPQITI-PMQPSEVNSRNLLDGRISLSFSDYSA 3092
            L SHG++A+ G ++    L+   W LRPPQ  I PMQP  V +RNL+DG ISL F DY  
Sbjct: 265  LASHGVKAIAGKKFDLQQLRNQQWVLRPPQAQIMPMQPQAVETRNLVDGSISLRFRDYET 324

Query: 3091 APIIRPAQFNARDEEIDQDEEKLRSS---HTIAALLHEYTFILTDDNPTEAPITETTMLH 2921
             P      +N  DEE++ +E+   S+   HT+A       +I+ ++             H
Sbjct: 325  QPTTSLPHYNEADEEVESEEDGDESTIREHTVA------VWIIGEEE------------H 366

Query: 2920 SETXXXXXXXXXXXXXXXXXXXLASLSKQPTTNSGDSPI----WDTDSEGSSEFTNPFAT 2753
            ++T                     S+   P +    + I    WD + E   E       
Sbjct: 367  NDTSGRKKVWEESANGNGRFFRYYSI---PQSYYDSTEIVASGWDNEVEEPKEEKE---E 420

Query: 2752 KGGGDNNNLDELIATGMEYPCLHK-------------LLQEVEDKNNKQQVYSTSTVISP 2612
            K   DN + D+     + +  L +              L E E  +  ++  +  + +  
Sbjct: 421  KDHQDNEDEDDDYDPDLYWAELQRQEDEKHIEWEFIATLNEEEVMDYPKKAETVLSEVVD 480

Query: 2611 YRPPENTAMGQPGYPPA--RGDPGPSRPPLTQEQHHPRTRFRSGFNNEMWTLPSAQQQGG 2438
            Y PP +T M   GYPPA     P P RPPL + +     +FR     E W LPS+Q   G
Sbjct: 481  YTPPGDTLMTPVGYPPASTSRQPQPERPPLYEGRLPQTPKFRRDDYTEWWQLPSSQATTG 540

Query: 2437 AMFVIPEQLELFDDTFSRWESITKNHVASQAFTDPKDKIEYMENLLGEIEKITWIQWRMS 2258
            A+FV+P+Q+ LF + FSRWESITKN++A Q FTDP DK+E++ENLLGE EK+TWIQWRM+
Sbjct: 541  ALFVMPKQIGLFHEVFSRWESITKNYIALQEFTDPADKVEFIENLLGETEKLTWIQWRMN 600

Query: 2257 YPAEYEALVNIGDGREGTHNILSQMRRVFTSEDPTQGSTVIQDVAYRDLEKLSCDNVKDI 2078
            Y  EY+ L+   DGR+GT NILSQ++R+F+ EDP  GST +QD AYRDLE+L+C+N+KDI
Sbjct: 601  YVTEYQQLITQADGRQGTQNILSQLKRIFSLEDPASGSTRVQDAAYRDLERLTCNNIKDI 660

Query: 2077 IRYMNDYLRIAAKSGRLY 2024
            ++++NDY R+AAK+GR++
Sbjct: 661  VQFLNDYGRLAAKTGRMF 678



 Score =  182 bits (462), Expect = 3e-42
 Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
 Frame = -3

Query: 2026 YAGMKRYRIRHSKTFKGKPHESHARIEKRKHLICNKKYKCYLCGQEGHFARKCPSERRNI 1847
            Y    +Y +R S+T++GKPH +HARIEK+KHL+ NK+ KCYLCG EGHFAR+CP+ +R+I
Sbjct: 752  YYDKPKYGVRKSQTYRGKPHATHARIEKKKHLVRNKRCKCYLCGDEGHFARECPNSKRDI 811

Query: 1846 IRVAIFEQLDIPDDCDILSVQEGEAQSDAIYSISEGEE-DNDLQKAVYTLQLNDAIFMLG 1670
             RVA+FE L++P++ +I+SV EG+ +SDAIYSISE EE   ++++ ++ L+  D  + LG
Sbjct: 812  KRVAMFEGLNLPEEYEIVSVDEGDEKSDAIYSISENEELCEEVEERIFMLKEEDQSYWLG 871

Query: 1669 QLDEGYHPRVKVSEEQINCQHDWHYNEPIXXXXXXXXXXCKRTIVQRARIHCLTCLVTAC 1490
            + +  +   V+V+++Q  CQH W +N+ I          CK+     +RIHC +C +T+C
Sbjct: 872  KTNH-WTAMVRVTQQQYYCQHQWDHNKDITQKELTSCFFCKQQTSSSSRIHCPSCQLTSC 930

Query: 1489 NLYGPYYFNKQVSIXXXXXXXXXPKHLLKEQRYYISWCE 1373
             +    Y +  V              LL++Q  YI W E
Sbjct: 931  AMCSTIYCDTPVQPKPKLPVPFRSNTLLEQQAAYILWLE 969



 Score =  147 bits (370), Expect = 2e-31
 Identities = 74/114 (64%), Positives = 89/114 (78%), Gaps = 2/114 (1%)
 Frame = -1

Query: 1173 NMLYNLTIEIKIPRIPRFPLK--AILDTGATTCCVEQGSIPKEALEHNTFIVNFSGINS* 1000
            NMLYNL   + IP + +FP+K  AILDTGATTCC++  S+PKEA+E NTF+V F GINS 
Sbjct: 1036 NMLYNLDALLTIPDV-KFPIKVKAILDTGATTCCIDINSVPKEAIEQNTFLVQFRGINSQ 1094

Query: 999  QTTRMKLKHGRMTIGDNIFRIPYTYSFPMILGDNI*MILGCNFIRAMHGGVRLQ 838
            Q    KLK+GRMTI D+ FRIPY Y+FP+ LGD I MILGCNFIR M+GGVRL+
Sbjct: 1095 QQVDKKLKYGRMTISDHQFRIPYCYAFPLNLGDGIQMILGCNFIRNMYGGVRLE 1148