BLASTX nr result

ID: Cheilocostus21_contig00022440 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00022440
         (661 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009415853.1| PREDICTED: coiled-coil domain-containing pro...    74   9e-12
ref|XP_009415852.1| PREDICTED: coiled-coil domain-containing pro...    68   1e-09
ref|XP_010929655.1| PREDICTED: coiled-coil domain-containing pro...    63   8e-08

>ref|XP_009415853.1| PREDICTED: coiled-coil domain-containing protein SCD2 isoform X3
           [Musa acuminata subsp. malaccensis]
          Length = 531

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 54/138 (39%), Positives = 64/138 (46%)
 Frame = +3

Query: 246 MDRGIAAGPQEYLQRQYSDGSAPSSPVHPLSMAAASFVSRNKRXXXXXXXXXRLTQMMMR 425
           MDR  A  P     RQ+S  SAPSSP HPLS  AA+     KR         RL Q+MMR
Sbjct: 1   MDRRRAGSP--VYARQFSVDSAPSSPAHPLSFEAAN----GKRTSRAAAANARLAQVMMR 54

Query: 426 XXXXXXXXXXXEPFDXXXXXXXXXXXXXXXXXXXPTMRSAAGASAVARNPTPALGRNIVE 605
                         D                      RS++GAS  ARNP+P LGRNI+E
Sbjct: 55  KRP-----------DYDAYEEEEDDSIPSIVGGGGRYRSSSGASVAARNPSPMLGRNIME 103

Query: 606 PVAASRSASTGRAPLSVR 659
             + +RS S GR+ LSVR
Sbjct: 104 TASTNRSTSAGRSTLSVR 121


>ref|XP_009415852.1| PREDICTED: coiled-coil domain-containing protein SCD2 isoform X2
           [Musa acuminata subsp. malaccensis]
          Length = 538

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 54/145 (37%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
 Frame = +3

Query: 246 MDRGIAAGPQEYLQRQYSDGSAPSSPVHPLSMAAASFVSRNKRXXXXXXXXXRLTQMMMR 425
           MDR  A  P     RQ+S  SAPSSP HPLS  AA+     KR         RL Q+MMR
Sbjct: 1   MDRRRAGSP--VYARQFSVDSAPSSPAHPLSFEAAN----GKRTSRAAAANARLAQVMMR 54

Query: 426 XXXXXXXXXXXEPFDXXXXXXXXXXXXXXXXXXXPTMRSAAGASAVARNPTP-------A 584
                         D                      RS++GAS  ARNP+P       +
Sbjct: 55  KRP-----------DYDAYEEEEDDSIPSIVGGGGRYRSSSGASVAARNPSPMVTSYNPS 103

Query: 585 LGRNIVEPVAASRSASTGRAPLSVR 659
           LGRNI+E  + +RS S GR+ LSVR
Sbjct: 104 LGRNIMETASTNRSTSAGRSTLSVR 128


>ref|XP_010929655.1| PREDICTED: coiled-coil domain-containing protein SCD2 isoform X2
           [Elaeis guineensis]
          Length = 545

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 46/126 (36%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
 Frame = +3

Query: 288 RQYSDG-SAPSSPVHPLS-MAAASFVSRNKRXXXXXXXXXRLTQMMMRXXXXXXXXXXXE 461
           RQY  G SAPSSP HPLS +A    ++ NKR         RL QMM             +
Sbjct: 15  RQYGVGKSAPSSPAHPLSAVAGGGGLAHNKRADKARAANTRLAQMMT------WQKPEYD 68

Query: 462 PFDXXXXXXXXXXXXXXXXXXXPTMRSAAGASAVARNPTPALGRNIVEPVAASRSASTGR 641
           P+D                       ++    A AR+P+P LGRN VEP    RS S GR
Sbjct: 69  PYDDDDDGDLLPSAAAAAAAGVGVSAASLLERAAARHPSPRLGRNFVEPAPTVRSTSAGR 128

Query: 642 APLSVR 659
             LSVR
Sbjct: 129 PSLSVR 134


Top