BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00022033
         (1744 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009391189.1| PREDICTED: DNA-directed RNA polymerase V sub...   512   e-161
ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V sub...   434   e-132
ref|XP_008812396.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   430   e-131
gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial ...   404   e-121
ref|XP_021823993.1| DNA-directed RNA polymerase V subunit 1 isof...   303   4e-86
ref|XP_018679039.1| PREDICTED: DNA-directed RNA polymerase V sub...   301   1e-85
ref|XP_015691132.1| PREDICTED: DNA-directed RNA polymerase V sub...   258   1e-70
gb|PNS22383.1| hypothetical protein POPTR_T148900v3, partial [Po...   254   2e-69
gb|OAY65183.1| DNA-directed RNA polymerase V subunit 1, partial ...   249   2e-69
ref|XP_020090098.1| DNA-directed RNA polymerase V subunit 1 [Ana...   249   2e-67
ref|XP_015640429.1| PREDICTED: DNA-directed RNA polymerase V sub...   247   4e-67
gb|AAY89359.1| RNA polymerase IV largest subunit, partial [Solan...   245   1e-66
gb|EEE56061.1| hypothetical protein OsJ_04874 [Oryza sativa Japo...   243   2e-65
dbj|BAD88247.1| putative DNA-directed RNA polymerase II largest ...   242   3e-65
ref|XP_010238829.1| PREDICTED: DNA-directed RNA polymerase V sub...   241   1e-64
ref|XP_020162274.1| DNA-directed RNA polymerase V subunit 1 [Aeg...   240   1e-64
gb|PAN04046.1| hypothetical protein PAHAL_A00310 [Panicum hallii]     239   2e-64
ref|XP_004951807.1| DNA-directed RNA polymerase V subunit 1 [Set...   239   3e-64
gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria ital...   239   3e-64
ref|XP_021314141.1| DNA-directed RNA polymerase V subunit 1 isof...   233   4e-62

>ref|XP_009391189.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009391190.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1738

 Score =  512 bits (1318), Expect = e-161
 Identities = 293/608 (48%), Positives = 367/608 (60%), Gaps = 109/608 (17%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+RLS+SI+MV+KGVMK+HLLLVANSMTCTG LIGFNTGGYKALFRSFKV+VP T
Sbjct: 1135 AFDQAVQRLSKSIKMVSKGVMKEHLLLVANSMTCTGKLIGFNTGGYKALFRSFKVEVPFT 1194

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
            AATLFTPMKCFE AA+K   DSL SVVSSCSWGK VAIGTGAPFQI+WDKKQM++N+ +G
Sbjct: 1195 AATLFTPMKCFERAAEKCQVDSLASVVSSCSWGKNVAIGTGAPFQILWDKKQMAMNKDIG 1254

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDESHEVGCNF 1200
            KGVY+FL+LL+   SGEATG+ L DVDELAE+N +   CLSP+L+G +TFD+S +V  NF
Sbjct: 1255 KGVYDFLELLRETSSGEATGRYLADVDELAEENGI---CLSPDLDGCMTFDDSDDVEYNF 1311

Query: 1199 QKN-----------------RRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQA 1071
            QK                    +++ + +GW  +E   ++N +   T  +VWSSWDS Q 
Sbjct: 1312 QKRIGVVNGKSGESSWEVDPVSVKSGNWEGWGDKESTHVDNCESPATKHNVWSSWDSIQV 1371

Query: 1070 NKKIFAPAKCVGET---------------------------------GKSAEKSCWN--- 999
             +K        G+T                                  K + ++CWN   
Sbjct: 1372 KQKTVESENLAGDTVPGEDMDAQKHSGTADESVAWGKWKADGNSTARDKLSHRNCWNEAS 1431

Query: 998  ---VDLDSG---------------------VKSADWQGWESSEPTDMKNGKLTEHK--KD 897
               VDL  G                          W    S +P    N   T+    +D
Sbjct: 1432 KTKVDLKEGSPVWNRTASSPKSKHNQDSLFSTPGTWSSQSSGKPWGQDNANNTKRNIAQD 1491

Query: 896  ---CPEFPNANVWQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTS-------------S 765
               C E P  N+W S  T N+   D+Q W+ + +KNLD QW  N S             S
Sbjct: 1492 GWRCAESPVTNIWDSTSTRNANVSDSQ-WSGNPSKNLDIQWDGNDSNKDLDSQWCGNVTS 1550

Query: 764  PSNTVDGGKQSWNTPGWGS----GRRN---YSGRTAGTSESRKDWNS-------KSRETF 627
             SNT +G  QSWN+ GWGS    GR+N   +S R  G S S+K WNS       +  E+ 
Sbjct: 1551 TSNTSEGRNQSWNSRGWGSANPPGRKNQKTFSARFPGKSASQKGWNSNRALASGRRLESL 1610

Query: 626  TEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDY 447
            T EEEKILAE++P++ T+KRI+            DQKFILENVF+YHPDK +KVS +VDY
Sbjct: 1611 TAEEEKILAEVEPVMLTIKRILHDSSDGNRLSADDQKFILENVFKYHPDKQSKVSDQVDY 1670

Query: 446  IKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRRAGI 267
            I VDK+ +FQ SRCF+VVS+DG+S DFSY+KC+E YVK TFSEHG SFC+KYF RRR+G 
Sbjct: 1671 IMVDKNMSFQDSRCFYVVSSDGTSADFSYLKCMEGYVKQTFSEHGESFCKKYFKRRRSGP 1730

Query: 266  ADECIQQR 243
            AD+  QQ+
Sbjct: 1731 ADDKNQQQ 1738


>ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_010932323.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_019708936.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_019708937.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
          Length = 1708

 Score =  434 bits (1115), Expect = e-132
 Identities = 261/582 (44%), Positives = 334/582 (57%), Gaps = 82/582 (14%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS SI  VAKGV+K HL+LVANSMTCTG+LIGFNT GYKALFRS KVQVP T
Sbjct: 1136 AFDQTVQRLSASITKVAKGVLKGHLILVANSMTCTGNLIGFNTAGYKALFRSLKVQVPFT 1195

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATL TPMKCFE AA+K H DSL SVVSSC WGK VAIGTG+PFQI+W+K+QM+ NQ++G
Sbjct: 1196 EATLITPMKCFERAAEKCHTDSLVSVVSSCLWGKHVAIGTGSPFQILWNKQQMAENQNIG 1255

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELN-GYLTFDESHEVGCN 1203
            KG Y+FL+L++     EA   C +DVD+L E NE ++ CLSPE+    LTFD+  ++  N
Sbjct: 1256 KGFYDFLELVRTSSQREAGDGCSLDVDDL-EVNENNEVCLSPEIGFEELTFDDGFDIDYN 1314

Query: 1202 FQKNRRLE------------------TDDCQGWESREPAAM------------------- 1134
             +K+  +E                  +D  QGWE+R    M                   
Sbjct: 1315 CKKDVSMENGKVGNSSWEKISDSVAGSDRWQGWENRNQPEMDMSSGWQGWDNGKQPFTDQ 1374

Query: 1133 ---------------ENGKLAETSTSVWSSWDSG--QANKKIFAPAKCVGETGKSAEKSC 1005
                           EN K   T TSVWSSWD+   Q      +P   +G    S++   
Sbjct: 1375 SNTSQGWGNKKVTDGENSKPPTTRTSVWSSWDASDVQERSPASSPKSQLGHVASSSKSGI 1434

Query: 1004 WNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQ 825
            W     S  K AD +  +++  +  ++G    H K+ P  P   VW + VT  S   DN 
Sbjct: 1435 WG--SQSSSKVADLRSVDTTSNSSTQDG--WNHVKESPAKP---VWDTNVTRKSHGADN- 1486

Query: 824  PWNCSATKNLDRQWSQNTSSPSNT-VDGGK-----------QSWNTPGWGSG-------R 702
             WN SA    +   SQ+     N   DGGK           QSW +  W S        +
Sbjct: 1487 TWNTSAFSKSNVWDSQSFDKVHNEGWDGGKWNENQVPDHKNQSWKSRSWNSSNATDRRTQ 1546

Query: 701  RNYSGRTAGTSESRKDWNSKSR--------ETFTEEEEKILAEIDPIVQTVKRIIRXXXX 546
            RN S ++AGTS+ RK WNS S         ++FT EEE+IL EI+P +QT++RI+R    
Sbjct: 1547 RNLSNKSAGTSDDRKGWNSNSMMTSTRRRLDSFTVEEERILVEIEPTMQTIRRILRESSD 1606

Query: 545  XXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDF 366
                   DQKFI+E VF++HPDK AKV+ ++D+I VDKH+ FQ SRCF+VVS DG+S DF
Sbjct: 1607 GDRLSADDQKFIIEKVFQHHPDKQAKVADQIDHIMVDKHKDFQDSRCFYVVSCDGTSADF 1666

Query: 365  SYIKCLENYVKTTFSEHGVSFCRKYFGRRRAGIADECIQQRQ 240
            SY KC+EN+VK  F EH  SF RKYF RRR    ++  QQ+Q
Sbjct: 1667 SYRKCMENFVKEIFPEHAESFNRKYFRRRRPEPVNDSQQQQQ 1708


>ref|XP_008812396.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
            1-like [Phoenix dactylifera]
          Length = 1656

 Score =  430 bits (1105), Expect = e-131
 Identities = 254/569 (44%), Positives = 325/569 (57%), Gaps = 82/569 (14%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+RLS SI MVAKGV+KDHL+LVANSM+CTG+LIGFNT GYKAL RS KVQVP T
Sbjct: 1094 AFDQAVQRLSASITMVAKGVLKDHLILVANSMSCTGNLIGFNTAGYKALXRSLKVQVPFT 1153

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATL TPMKCFE AA+K H DSLTSVVSSC WGK VAIGTG+PFQI+W+K+QM+ NQ++G
Sbjct: 1154 EATLITPMKCFERAAEKCHTDSLTSVVSSCLWGKHVAIGTGSPFQILWNKRQMAENQNIG 1213

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELN-GYLTFDESHEVGCN 1203
            KG Y+FL+L++    GEA   C VDVD+L   NE D+ CLSPE+    LTFD+  EV  N
Sbjct: 1214 KGFYDFLELVRTSSQGEAGNGCSVDVDDLGV-NENDEVCLSPEIGFEKLTFDDGFEVDYN 1272

Query: 1202 FQKNRRLE---------------------------------------------------- 1179
             +K+  +E                                                    
Sbjct: 1273 LKKDISMENGKVGNSSWEKLSDSVVGSDRWQGWENGNQPEMDTSSGWQGWDNGKQPFIDR 1332

Query: 1178 TDDCQGWESREPAAMENGKLAETSTSVWSSWDSG--QANKKIFAPAKCVGETGKSAEKSC 1005
            +D  QGW +      EN KL     SVWSSWD+   Q   +  +P         S++   
Sbjct: 1333 SDRSQGWGNERVTDRENSKLPTARPSVWSSWDASDVQERSQASSPKSQPRHVASSSKSRI 1392

Query: 1004 WNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQ 825
            W+    S  K AD    +++   + ++G    H  + P  P   VW + +T  S + DN 
Sbjct: 1393 WS--SQSSSKVADGSSVDTTSKGNAQDG--WNHVTESPAKP---VWDTNITRKSHEADN- 1444

Query: 824  PWNCSATKNLDRQWSQNTSSPSNT-VDGGK-----------QSWNTPGWGSG-------R 702
             WN SA    +    Q+     N   DGG+           QSW + GW S        +
Sbjct: 1445 TWNTSAFSKSNVWDGQSFDKVHNEGSDGGRWNENQATDRKNQSWKSHGWNSSNATDRRTQ 1504

Query: 701  RNYSGRTAGTSESRKDWNSKS--------RETFTEEEEKILAEIDPIVQTVKRIIRXXXX 546
            RNYS ++ G  ++RK WN  S         ++FT EEE+IL EI+P +QT++RI+R    
Sbjct: 1505 RNYSNKSLGMPDNRKGWNPNSLLTSTGRRLDSFTVEEERILVEIEPTMQTIRRILRESSD 1564

Query: 545  XXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDF 366
                   DQKFILE VF++HPDK AKV+ ++D+I VDKH++FQ SRCF+VVS DG+S DF
Sbjct: 1565 GDQLSADDQKFILERVFQHHPDKQAKVADQIDHIMVDKHQSFQDSRCFYVVSCDGTSADF 1624

Query: 365  SYIKCLENYVKTTFSEHGVSFCRKYFGRR 279
            SYIKC+EN+VK  F EH  SF RKYF RR
Sbjct: 1625 SYIKCMENFVKEIFPEHAESFNRKYFRRR 1653


>gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial [Cocos nucifera]
          Length = 1673

 Score =  404 bits (1037), Expect = e-121
 Identities = 244/547 (44%), Positives = 315/547 (57%), Gaps = 82/547 (14%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS SI  VAKGV+KDHL+LVANSMTCTG+LIGFNT GYKALFRS KVQVP T
Sbjct: 1136 AFDQTVQRLSASITKVAKGVLKDHLILVANSMTCTGNLIGFNTAGYKALFRSLKVQVPFT 1195

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATL TPMKCFE AA+K H DSL SVVSSC WGK VAIGTG+PFQI+W+K+QM+ NQ++G
Sbjct: 1196 EATLITPMKCFERAAEKCHTDSLASVVSSCLWGKHVAIGTGSPFQILWNKQQMAENQNIG 1255

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELN-GYLTFDESHEVGCN 1203
            KG Y+FL+L++     EA   C +DVD+L E NE ++ CLSPE+    LTFD+  +V  N
Sbjct: 1256 KGFYDFLELVRTSSQREAGDGCSLDVDDL-EANENNEVCLSPEIGFEELTFDDGFDVDYN 1314

Query: 1202 FQKNRRLE------------------TDDCQGWESREPAAM------------------- 1134
             +K+  +E                  +D  QGWE+R    M                   
Sbjct: 1315 LKKDVSMENGKVGKSSWEKISDSVAGSDRWQGWENRNQPEMDVSSDWQGWDNGKQPFTDR 1374

Query: 1133 ---------------ENGKLAETSTSVWSSWDSG--QANKKIFAPAKCVGETGKSAEKSC 1005
                           EN  L  T  SVWSSWD+   Q      +P   +G    S++   
Sbjct: 1375 SNRSQGWGNEKVTDGENSILPTTRPSVWSSWDATDVQERSPASSPKSQLGHVASSSKSGI 1434

Query: 1004 WNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQ 825
            W     S  K AD +  +S+  +  ++G    H K+ P  P   VW + VT  S + DN 
Sbjct: 1435 WGSQNFS--KVADLRSVDSTSKSSTQDG--WNHVKESPAKP---VWDTNVTRKSHEADN- 1486

Query: 824  PWNCSATKNLDRQWSQNTSS-PSNTVDGGK-----------QSWNTPGWGSG-------R 702
             WN SA    +   SQ+     S   DGG+           QSW + GW S        +
Sbjct: 1487 TWNTSAFSKSNVWGSQSFDKVHSEGSDGGRWNENQVPDRKNQSWKSRGWNSSNATDRRTQ 1546

Query: 701  RNYSGRTAGTSESRKDWNSKSR--------ETFTEEEEKILAEIDPIVQTVKRIIRXXXX 546
            RN+S ++A TS+ RK WNS S         ++FT EEE+IL EI+P +QT++RI+R    
Sbjct: 1547 RNHSNKSAMTSDDRKGWNSNSMMTSTRRRLDSFTVEEERILIEIEPTMQTIRRILRESSD 1606

Query: 545  XXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDF 366
                   DQKFI+E VF++HPDK AKV+ ++D+I VDKH+ FQ SRCF+VVS DG++ DF
Sbjct: 1607 GDQLSADDQKFIIERVFQHHPDKQAKVADQIDHIMVDKHKDFQDSRCFYVVSCDGTNADF 1666

Query: 365  SYIKCLE 345
            SYIKC+E
Sbjct: 1667 SYIKCME 1673


>ref|XP_021823993.1| DNA-directed RNA polymerase V subunit 1 isoform X2 [Prunus avium]
          Length = 1666

 Score =  303 bits (776), Expect = 4e-86
 Identities = 194/531 (36%), Positives = 285/531 (53%), Gaps = 44/531 (8%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+RLS ++ MVAKGV+K+HL+L+ANSMTC G+ +GFN+ GYKAL R+  +QVP T
Sbjct: 1135 AFDQAVQRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFT 1194

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATLFTP KCFE AA+K H DSL S+V+SCSWGK VA+GTGA F ++WD +++ + Q  G
Sbjct: 1195 EATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGARFDVLWDTREVELTQEGG 1254

Query: 1379 KGVYEFLQLLKPIPSGEA-TGQCLVDVDELAEDNELDDSCLSPELNGYL---TFDESHEV 1212
              V+ FL ++      EA TG    +VD+L   +E+ DS  SPELN       F++  E 
Sbjct: 1255 LDVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEF 1314

Query: 1211 G---------CNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSW--------D 1083
                       N++K+    TD   G    +  +++          VWSSW        D
Sbjct: 1315 DDKLGDLPEKSNWEKDSSFHTDSSGG----KDWSVDKNVGTVAVPDVWSSWGTEKGKTQD 1370

Query: 1082 SGQANKKIFAPAKCVGET----GKSAEK----SCWNVDLDSGVKSADWQGWESS--EPTD 933
            S  A  ++ +    V +T    GK+  K    S W     S     DW G E+   EP D
Sbjct: 1371 SNSAEAQLDSKKSSVLDTSSVWGKNPAKENTTSTWGTTTAS---ENDWCGREAGKVEPVD 1427

Query: 932  MKNGKLTEHKKDCPEFPNANV--WQSIVTPNSEDLDNQPWNCSATKNLDRQWSQN--TSS 765
            ++  K        P+  +A++  W S            P     +   + QW Q+    +
Sbjct: 1428 LQPTK--------PQDDSASLSGWDS------------PTGDGNSGERNHQWGQHRGDQT 1467

Query: 764  PSNTVDGGKQSWNTPG-WGSGRRNYSGRTAGTSESRKDWNS------KSRETFTEEEEKI 606
              +  +G +   ++PG W +  +N   ++ G         +      +  + FT EE+ +
Sbjct: 1468 KKSRFEGARNWVSSPGEWKN--KNRPPKSPGMVNDNSTMGALFTVTRQRLDMFTSEEQDV 1525

Query: 605  LAEIDPIVQTVKRIIR--XXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDK 432
            L+ I+P++++++RI+              DQ F+L+NVF YHPDK AK+   +D++ V++
Sbjct: 1526 LSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNR 1585

Query: 431  HETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRR 279
            H +FQ SRCFFVVSTDG + DFSY KCL+NY++  F E   +F  KYF RR
Sbjct: 1586 HGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIREKFPEIADTFIGKYFSRR 1636


>ref|XP_018679039.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1444

 Score =  301 bits (770), Expect = 1e-85
 Identities = 159/288 (55%), Positives = 199/288 (69%), Gaps = 19/288 (6%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+RLS+SI+MV+KGVMK+HLLLVANSMTCTG LIGFNTGGYKALFRSFKV+VP T
Sbjct: 1135 AFDQAVQRLSKSIKMVSKGVMKEHLLLVANSMTCTGKLIGFNTGGYKALFRSFKVEVPFT 1194

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
            AATLFTPMKCFE AA+K   DSL SVVSSCSWGK VAIGTGAPFQI+WDKKQM++N+ +G
Sbjct: 1195 AATLFTPMKCFERAAEKCQVDSLASVVSSCSWGKNVAIGTGAPFQILWDKKQMAMNKDIG 1254

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDESHEVGCNF 1200
            KGVY+FL+LL+   SGEATG+ L DVDELAE+N +   CLSP+L+G +TFD+S +V  NF
Sbjct: 1255 KGVYDFLELLRETSSGEATGRYLADVDELAEENGI---CLSPDLDGCMTFDDSDDVEYNF 1311

Query: 1199 QKN-----------------RRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQA 1071
            QK                    +++ + +GW  +E   ++N +   T  +VWSSWDS Q 
Sbjct: 1312 QKRIGVVNGKSGESSWEVDPVSVKSGNWEGWGDKESTHVDNCESPATKHNVWSSWDSIQV 1371

Query: 1070 NKKIFAPAKCVGET--GKSAEKSCWNVDLDSGVKSADWQGWESSEPTD 933
             +K        G+T  G+  +    +   D  V    W+   +S   D
Sbjct: 1372 KQKTVESENLAGDTVPGEDMDAQKHSGTADESVAWGKWKADGNSTARD 1419


>ref|XP_015691132.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Oryza
            brachyantha]
          Length = 1495

 Score =  258 bits (659), Expect = 1e-70
 Identities = 174/507 (34%), Positives = 258/507 (50%), Gaps = 22/507 (4%)
 Frame = -3

Query: 1742 TAFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPV 1563
            + F++  + LS+++ MV K V++DHL  VA+SMTCTG L GFN+ GYKA  +S KVQ P 
Sbjct: 1023 STFEKVTQHLSKAVGMVTKSVLQDHLTTVASSMTCTGDLHGFNSSGYKATSQSLKVQAPF 1082

Query: 1562 TAATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHM 1383
              ATL T  +CFE AA K + D L S+VSSCSWG   AIGTG+ F+I+W+ + MS ++ +
Sbjct: 1083 MDATLSTSTRCFEKAAAKAYSDQLGSIVSSCSWGNNAAIGTGSAFEILWNNENMSSSKSI 1142

Query: 1382 --GKGVYEFLQLLKPIPSGE-----ATGQCLVDVDELAEDNEL----DDSCLSPELNGYL 1236
              G G+Y+FL+ ++   + E         CL DVD + ED       +    + +     
Sbjct: 1143 LGGYGLYDFLEAVETTRATEDKAIVPHNSCLYDVDCILEDEAYLEGNNQIAWTDKPKAEF 1202

Query: 1235 TFDESHEVGCNF--QKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKK 1062
              D     G +   QK++R +T     WE+ +P+  E    +  + +V  S  +   N+ 
Sbjct: 1203 LMDSEGRTGMHSTGQKHQRKQT--MSDWENDKPSWYEGNTGSSPNFTVAGSTRTCGWNRS 1260

Query: 1061 IFAPAKCVGETGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFP 882
                   V +  +   KS WN D     +  D   W  S  T  +N              
Sbjct: 1261 ----TDQVFQKRQLKIKSNWNSD---ATQQDDKPSWYRSNSTGRQN-------------- 1299

Query: 881  NANVWQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTPG----- 717
                   IV  +S+  +   WN   T N  R   +       +  GG  S    G     
Sbjct: 1300 ------FIVAGSSKPGE---WN-RKTSNRGRGGGRAMGRSEASHRGGSSSNRNRGGGRAV 1349

Query: 716  WGSGRRNYSGRTAGTSESRKDWNSKSRE----TFTEEEEKILAEIDPIVQTVKRIIRXXX 549
            W S   +Y G ++   ++ K  NS +R+     FT  E++I AE++PI++ VKRIIR   
Sbjct: 1350 WKSEASHYRGSSSRNWKTPK--NSSTRQAASYAFTPVEQQISAEVEPIIKNVKRIIRESR 1407

Query: 548  XXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVD 369
                    D+ FI+ N+  YHP+K  K++ + +YI VD+H+ FQGSRC +V+S+DGS  D
Sbjct: 1408 DGIKLPQDDEVFIVRNILMYHPEKEKKIAGKGNYITVDRHQVFQGSRCLYVMSSDGSRKD 1467

Query: 368  FSYIKCLENYVKTTFSEHGVSFCRKYF 288
            FSY KCLENY++  + +   SFCRKYF
Sbjct: 1468 FSYKKCLENYIRVHYPDAADSFCRKYF 1494


>gb|PNS22383.1| hypothetical protein POPTR_T148900v3, partial [Populus trichocarpa]
          Length = 1431

 Score =  254 bits (650), Expect = 2e-69
 Identities = 170/496 (34%), Positives = 246/496 (49%), Gaps = 39/496 (7%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+RLS+S+ MVAKGV+K+HL+L+ NSMTC GSLIGF TGGYK L RS  +QVP T
Sbjct: 949  AFDQAVQRLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFT 1008

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATLFTP KCFE AA+K H D L+S+V+SCSWGK V +GTG+ F ++WD K+  +N   G
Sbjct: 1009 EATLFTPRKCFEKAAEKCHTDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGG 1068

Query: 1379 KGVYEFLQLLKPIPSG-EATGQCL-VDVDELAEDNELDDSCLSPELNGYL---TFDESHE 1215
               Y FL +++    G E+   CL  +VD+L  ++E  D  LSPE +      TF++S E
Sbjct: 1069 IDAYSFLNMVRSTAGGEESVTACLGAEVDDLILEDE--DWNLSPEHHSSSDKPTFEDSAE 1126

Query: 1214 VGCNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWS--SWD---SGQANKK---- 1062
                            Q +   +PA    GK +      WS  +WD   +  A K+    
Sbjct: 1127 F---------------QDFLGNQPAESNWGKASSLKDGSWSAGNWDVDKNDSAGKEKPWS 1171

Query: 1061 ---IFAPAKCVGETGKSAEK--SCWNVDLDSGVKSADWQGWESSEPTDMKNG---KLTEH 906
                 A    VG    +  K  S WN + D   +S    GW +++ ++  NG   K+ E 
Sbjct: 1172 LGMSSAETNDVGWDTAATRKINSSWNSENDV-TQSNSLSGW-ATKKSETHNGFATKVQEK 1229

Query: 905  KKDCPEFPNANVWQSIVTPNSEDLDNQPWNCSAT-------------KNLDRQWSQNTSS 765
                 ++     W      N      + W   A                 D+QW Q +  
Sbjct: 1230 PARSNDWDVGTAWGRKAGDNKFANVTKSWWGKAVDGWGVPNSAGSNGSERDQQWGQQSGE 1289

Query: 764  PSNTVDGGKQSW--NTPGWGSGRRNYSGRTAGTSESRKDWNSKSRETFTEEEEKILAEID 591
                   G + W  N   W    R        +S        +  + FT +E+ IL++++
Sbjct: 1290 FKKNRTEGSRGWGSNNGDWKKRNRPSKPHEDSSSSGLFTTTRQRLDIFTSQEQDILSDVE 1349

Query: 590  PIVQTVKRIIR--XXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQ 417
            P++ +++RI+              DQ ++L+NVF YHPDK  K+   ++++ V +H  FQ
Sbjct: 1350 PLMLSIRRIMHQTGYSDGDPLSADDQSYVLDNVFNYHPDKAVKMGAGINHVTVSRHSNFQ 1409

Query: 416  GSRCFFVVSTDGSSVD 369
             SRCF++VSTD    D
Sbjct: 1410 ESRCFYIVSTDDCKQD 1425


>gb|OAY65183.1| DNA-directed RNA polymerase V subunit 1, partial [Ananas comosus]
          Length = 800

 Score =  249 bits (635), Expect = 2e-69
 Identities = 157/377 (41%), Positives = 206/377 (54%), Gaps = 18/377 (4%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+R+S SIR VAKGV+KDHL+LVA+SMTCTG L GFNTGGYKA FRS KVQVP T
Sbjct: 138  AFDQAVERMSTSIRKVAKGVLKDHLILVASSMTCTGKLNGFNTGGYKATFRSLKVQVPFT 197

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATLFTPMKCFE AA+K H DSL S VSSCSWGK VA+GTG+ FQIIWDKKQM+ ++ +G
Sbjct: 198  EATLFTPMKCFERAAEKCHSDSLDSGVSSCSWGKHVALGTGSSFQIIWDKKQMANDKDIG 257

Query: 1379 KGVYEFLQLLKPI-PSGEATGQCLVDVDELAEDNELDDSCLSPEL-NGYL--TFDESHEV 1212
            KG+Y+FL +++      EA G CL DVD+L E+N+ +  CLSP+  +G+   TF+E+ E 
Sbjct: 258  KGLYDFLVMVRTSGDQREANGACLEDVDDLEEEND-EALCLSPQFDDGFTNPTFEETFEG 316

Query: 1211 GCNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGE 1032
              +F K                 +  ENGK+        SSWD          P +C  E
Sbjct: 317  EVSFWKG----------------SIHENGKINN------SSWDK---------PRECNFE 345

Query: 1031 TGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDC-PEFPNANVWQSIV 855
              K A    W     S   S +   WES     ++   + E    C  + P+ N W   +
Sbjct: 346  FEKEAPPESWE-KWKSTNTSRNASAWESG----VRKENIVEEDWSCVTDSPSKNSWCKKL 400

Query: 854  TPNSEDLDNQPWNCSAT-------------KNLDRQWSQNTSSPSNTVDGGKQSWNTPGW 714
              N+++ D++ WN + T               L+   +          D   ++W + GW
Sbjct: 401  ASNTQESDDR-WNANVTLKSNIWNSQKSEGNQLENSANAKRWDDKKASDHANETWKSDGW 459

Query: 713  GSGRRNYSGRTAGTSES 663
            GS      G     S+S
Sbjct: 460  GSSNPTKWGTQTNHSDS 476



 Score =  179 bits (455), Expect = 1e-44
 Identities = 126/341 (36%), Positives = 167/341 (48%), Gaps = 38/341 (11%)
 Frame = -3

Query: 1181 ETDDCQGWESREPA---AMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGKSAEK 1011
            ET    GW S  P       N   +     V   W S  +   ++A  K      K + +
Sbjct: 452  ETWKSDGWGSSNPTKWGTQTNHSDSSDKKEVDDQWISLASKSNVWASQK---SEEKLSHE 508

Query: 1010 SCWNVDLDSGVKSADWQ--GWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVT--PNS 843
            + WN ++ S   +  W+  GW SS PT+   G    H + C      + W S VT  PN 
Sbjct: 509  NRWNDNVVSDHANETWKSDGWCSSNPTNW--GIQKNHPESCDIREIDDQWNSNVTSKPNV 566

Query: 842  ED--------LDNQPWNCSATKNLDRQ------WSQNTSS---PSNTVDGGKQSWNTPGW 714
             D        LD   WN + T + D Q      W  N S     SN  DG   S  + GW
Sbjct: 567  WDSQKSEEKLLDANRWNDNKTSDNDSQTMKSDGWGPNKSDGWGSSNKSDGWGSSNKSDGW 626

Query: 713  GS--------GRRNYSGRTAGTSESRKD----WNSKSR--ETFTEEEEKILAEIDPIVQT 576
            GS        G++N S R     +  K     + S  R  ++FT EEEKIL E++P +  
Sbjct: 627  GSSLNPQNRKGQKNQSKRPPRKPDEAKGGTIGFTSTGRRLDSFTAEEEKILVEVEPTMHN 686

Query: 575  VKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFV 396
            +KRI+R           D KFI E VFEYHPDK AKVS ++DYI VDKH+ FQ SRCF+V
Sbjct: 687  IKRILRDSSDGEKLSEDDGKFITEKVFEYHPDKLAKVSDKIDYIMVDKHQQFQESRCFYV 746

Query: 395  VSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRRA 273
            VS DGS  DFSY+KC+EN+V++ F+E+  SF RKYF +  +
Sbjct: 747  VSCDGSRADFSYLKCMENFVRSNFAENADSFTRKYFRKHHS 787


>ref|XP_020090098.1| DNA-directed RNA polymerase V subunit 1 [Ananas comosus]
          Length = 1800

 Score =  249 bits (635), Expect = 2e-67
 Identities = 157/377 (41%), Positives = 206/377 (54%), Gaps = 18/377 (4%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQAV+R+S SIR VAKGV+KDHL+LVA+SMTCTG L GFNTGGYKA FRS KVQVP T
Sbjct: 1138 AFDQAVERMSTSIRKVAKGVLKDHLILVASSMTCTGKLNGFNTGGYKATFRSLKVQVPFT 1197

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATLFTPMKCFE AA+K H DSL S VSSCSWGK VA+GTG+ FQIIWDKKQM+ ++ +G
Sbjct: 1198 EATLFTPMKCFERAAEKCHSDSLDSGVSSCSWGKHVALGTGSSFQIIWDKKQMANDKDIG 1257

Query: 1379 KGVYEFLQLLKPI-PSGEATGQCLVDVDELAEDNELDDSCLSPEL-NGYL--TFDESHEV 1212
            KG+Y+FL +++      EA G CL DVD+L E+N+ +  CLSP+  +G+   TF+E+ E 
Sbjct: 1258 KGLYDFLVMVRTSGDQREANGACLEDVDDLEEEND-EALCLSPQFDDGFTNPTFEETFEG 1316

Query: 1211 GCNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGE 1032
              +F K                 +  ENGK+        SSWD          P +C  E
Sbjct: 1317 EVSFWKG----------------SIHENGKINN------SSWDK---------PRECNFE 1345

Query: 1031 TGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDC-PEFPNANVWQSIV 855
              K A    W     S   S +   WES     ++   + E    C  + P+ N W   +
Sbjct: 1346 FEKEAPPESWE-KWKSTNTSRNASAWESG----VRKENIVEEDWSCVTDSPSKNSWCKKL 1400

Query: 854  TPNSEDLDNQPWNCSAT-------------KNLDRQWSQNTSSPSNTVDGGKQSWNTPGW 714
              N+++ D++ WN + T               L+   +          D   ++W + GW
Sbjct: 1401 ASNTQESDDR-WNANVTLKSNIWNSQKSEGNQLENSANAKRWDDKKASDHANETWKSDGW 1459

Query: 713  GSGRRNYSGRTAGTSES 663
            GS      G     S+S
Sbjct: 1460 GSSNPTKWGTQTNHSDS 1476



 Score =  179 bits (455), Expect = 5e-44
 Identities = 126/341 (36%), Positives = 167/341 (48%), Gaps = 38/341 (11%)
 Frame = -3

Query: 1181 ETDDCQGWESREPA---AMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGKSAEK 1011
            ET    GW S  P       N   +     V   W S  +   ++A  K      K + +
Sbjct: 1452 ETWKSDGWGSSNPTKWGTQTNHSDSSDKKEVDDQWISLASKSNVWASQK---SEEKLSHE 1508

Query: 1010 SCWNVDLDSGVKSADWQ--GWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVT--PNS 843
            + WN ++ S   +  W+  GW SS PT+   G    H + C      + W S VT  PN 
Sbjct: 1509 NRWNDNVVSDHANETWKSDGWCSSNPTNW--GIQKNHPESCDIREIDDQWNSNVTSKPNV 1566

Query: 842  ED--------LDNQPWNCSATKNLDRQ------WSQNTSS---PSNTVDGGKQSWNTPGW 714
             D        LD   WN + T + D Q      W  N S     SN  DG   S  + GW
Sbjct: 1567 WDSQKSEEKLLDANRWNDNKTSDNDSQTMKSDGWGPNKSDGWGSSNKSDGWGSSNKSDGW 1626

Query: 713  GS--------GRRNYSGRTAGTSESRKD----WNSKSR--ETFTEEEEKILAEIDPIVQT 576
            GS        G++N S R     +  K     + S  R  ++FT EEEKIL E++P +  
Sbjct: 1627 GSSLNPQNRKGQKNQSKRPPRKPDEAKGGTIGFTSTGRRLDSFTAEEEKILVEVEPTMHN 1686

Query: 575  VKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFV 396
            +KRI+R           D KFI E VFEYHPDK AKVS ++DYI VDKH+ FQ SRCF+V
Sbjct: 1687 IKRILRDSSDGEKLSEDDGKFITEKVFEYHPDKLAKVSDKIDYIMVDKHQQFQESRCFYV 1746

Query: 395  VSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRRA 273
            VS DGS  DFSY+KC+EN+V++ F+E+  SF RKYF +  +
Sbjct: 1747 VSCDGSRADFSYLKCMENFVRSNFAENADSFTRKYFRKHHS 1787


>ref|XP_015640429.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like, partial
            [Oryza sativa Japonica Group]
          Length = 1262

 Score =  247 bits (631), Expect = 4e-67
 Identities = 168/501 (33%), Positives = 248/501 (49%), Gaps = 16/501 (3%)
 Frame = -3

Query: 1742 TAFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPV 1563
            +AF++  + LS+S+ M+ K V+++HL  VA+SMTCTG L GFN  GYKA  +S KVQ P 
Sbjct: 798  SAFEKVTQYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPF 857

Query: 1562 TAATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHM 1383
              ATL   ++CFE AA K + D L +VVS+CSWG    IGTG+ F+I+W+ + MS ++ +
Sbjct: 858  MEATLSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSI 917

Query: 1382 --GKGVYEFLQLLKPIPSGE-----ATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDE 1224
              G G+Y+FL+ ++   + +         CL DVD + ED      CL  E N  +T+ +
Sbjct: 918  LGGYGLYDFLEAVETTGATKDKAIVPHNYCLYDVDCIPEDK----VCL--EENNQITWTD 971

Query: 1223 SHEVGCNFQ-KNRRLETDDCQGWESREPAAME-NGKLAETSTSVWSSWDSGQANKKIFAP 1050
              +     + + RR           R+P   E N K +  ST+V     +GQ        
Sbjct: 972  KPKAEFLMESEGRRAGMHSTGQKHPRKPNWHEGNTKSSPNSTAVEF---TGQ-------- 1020

Query: 1049 AKCVGETGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANV 870
               V +  +   KS WN D     +  D   W SS     +N  +    +          
Sbjct: 1021 ---VFQRRQLKTKSNWNSD---ATQQDDKPSWYSSNSAGTQNFTIAGSSR-------PGE 1067

Query: 869  WQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTP----GWGSGR 702
            W        +    + W             +  SS +    GG+  W +     G G+ R
Sbjct: 1068 WNRKNNNRGQGGGREVWKSEGP-------HRGGSSSNRNQGGGRAVWKSEASHRGSGNNR 1120

Query: 701  RNYSGRTAGTSESRKDWNSKSRE---TFTEEEEKILAEIDPIVQTVKRIIRXXXXXXXXX 531
                GR    SE+ +   S  +     FT  E++I  +I+PI + VKRIIR         
Sbjct: 1121 NRGGGRAVWKSEASRRGGSMRQVASCAFTPVEQQIFEQIEPITKNVKRIIRESRDGIKLP 1180

Query: 530  XXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKC 351
              D+KFI+ NV  YHP++  K++   +YI VD+H+ F GSRC +V+S+DGS  DFSY KC
Sbjct: 1181 PDDEKFIVTNVLMYHPERKKKIAGNGNYITVDRHQVFHGSRCLYVMSSDGSRKDFSYKKC 1240

Query: 350  LENYVKTTFSEHGVSFCRKYF 288
            LENY++  + +   SFCRKYF
Sbjct: 1241 LENYIRAQYPDAADSFCRKYF 1261


>gb|AAY89359.1| RNA polymerase IV largest subunit, partial [Solanum lycopersicum]
          Length = 1127

 Score =  245 bits (625), Expect = 1e-66
 Identities = 170/495 (34%), Positives = 249/495 (50%), Gaps = 34/495 (6%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AF+QAV RLS S+ MV KGV+KDHL+L+ANSMTC G+L+GFN GG KAL RS  VQ+P T
Sbjct: 678  AFEQAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFT 737

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATLFTP KCFE AA+K H DSL+S+V+SCSWGK VA+GTG+ F+++ + + +  N    
Sbjct: 738  EATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDT 797

Query: 1379 KGVYEFLQLLKPIPSGEATG-QCL-VDVDELAEDNELDDSCLSPELNG---YLTFDESHE 1215
            + VY FL L++   + E  G  CL  ++DEL ED ++    LSP  +      TF++  E
Sbjct: 798  RDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDM-GLYLSPNRDSGSEMPTFEDRAE 856

Query: 1214 VGCNFQKNRRLETDDCQG--WESREPAAMENG-------------KLAETSTSVWSSWDS 1080
                F  N  L+     G  WE     ++++G             +     +  WSSW  
Sbjct: 857  ----FDYNENLDEGKPSGSAWEEASSGSVKSGGSWDMAGKTQNGAEEGVNQSDSWSSW-- 910

Query: 1079 GQANKKIFAPAKCVGETGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKK 900
                KK+  P     ++G             SG +S  W  W        +  K+     
Sbjct: 911  ---GKKVDEPENNRQQSG-------------SGEQSGSWSPW------GRRWKKMVVLGD 948

Query: 899  DCPEFPNANVWQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTV--DGGKQSW- 729
            +  +  + + W     PN   L       SAT   +R+  Q+ +  S++V  DG  + W 
Sbjct: 949  EPKQLNSESSWGK--APNGGGLG------SATAEGNRRLDQSVNDWSSSVSRDGQYKKWW 1000

Query: 728  ---------NTPGWGSGRRNYSGRTAGTSESRKDWNSKSR--ETFTEEEEKILAEIDPIV 582
                        G    + N   R+A  S     + +  +  + FT EE++I++++DPI+
Sbjct: 1001 LEFFKRWWLELSGGWQWKNNRPARSADDSNRGGHFTATRQKIDLFTAEEQEIISDVDPIM 1060

Query: 581  QTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCF 402
              VK               DQ +I++ V  YHPDK  K+   +DYI V KH  FQ +RCF
Sbjct: 1061 LKVK--------SDPLSADDQSYIIDTVLNYHPDKAVKMGAGLDYITVSKHTNFQDTRCF 1112

Query: 401  FVVSTDGSSVDFSYI 357
            +VVSTDG+  + + +
Sbjct: 1113 YVVSTDGAKQELAAV 1127


>gb|EEE56061.1| hypothetical protein OsJ_04874 [Oryza sativa Japonica Group]
          Length = 1528

 Score =  243 bits (619), Expect = 2e-65
 Identities = 167/497 (33%), Positives = 244/497 (49%), Gaps = 16/497 (3%)
 Frame = -3

Query: 1730 QAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVTAAT 1551
            Q  + LS+S+ M+ K V+++HL  VA+SMTCTG L GFN  GYKA  +S KVQ P   AT
Sbjct: 1068 QVRQYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEAT 1127

Query: 1550 LFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHM--GK 1377
            L   ++CFE AA K + D L +VVS+CSWG    IGTG+ F+I+W+ + MS ++ +  G 
Sbjct: 1128 LSRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSILGGY 1187

Query: 1376 GVYEFLQLLKPIPSGE-----ATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDESHEV 1212
            G+Y+FL+ ++   + +         CL DVD + ED      CL  E N  +T+ +  + 
Sbjct: 1188 GLYDFLEAVETTGATKDKAIVPHNYCLYDVDCIPEDK----VCL--EENNQITWTDKPKA 1241

Query: 1211 GCNFQ-KNRRLETDDCQGWESREPAAME-NGKLAETSTSVWSSWDSGQANKKIFAPAKCV 1038
                + + RR           R+P   E N K +  ST+V     +GQ           V
Sbjct: 1242 EFLMESEGRRAGMHSTGQKHPRKPNWHEGNTKSSPNSTAVEF---TGQ-----------V 1287

Query: 1037 GETGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSI 858
             +  +   KS WN D     +  D   W SS     +N  +    +          W   
Sbjct: 1288 FQRRQLKTKSNWNSD---ATQQDDKPSWYSSNSAGTQNFTIAGSSR-------PGEWNRK 1337

Query: 857  VTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTP----GWGSGRRNYS 690
                 +    + W             +  SS +    GG+  W +     G G+ R    
Sbjct: 1338 NNNRGQGGGREVWKSEGP-------HRGGSSSNRNQGGGRAVWKSEASHRGSGNNRNRGG 1390

Query: 689  GRTAGTSESRKDWNSKSRE---TFTEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQ 519
            GR    SE+ +   S  +     FT  E++I  +I+PI + VKRIIR           D+
Sbjct: 1391 GRAVWKSEASRRGGSMRQVASCAFTPVEQQIFEQIEPITKNVKRIIRESRDGIKLPPDDE 1450

Query: 518  KFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENY 339
            KFI+ NV  YHP++  K++   +YI VD+H+ F GSRC +V+S+DGS  DFSY KCLENY
Sbjct: 1451 KFIVTNVLMYHPERKKKIAGNGNYITVDRHQVFHGSRCLYVMSSDGSRKDFSYKKCLENY 1510

Query: 338  VKTTFSEHGVSFCRKYF 288
            ++  + +   SFCRKYF
Sbjct: 1511 IRAQYPDAADSFCRKYF 1527


>dbj|BAD88247.1| putative DNA-directed RNA polymerase II largest subunit [Oryza sativa
            Japonica Group]
          Length = 1568

 Score =  242 bits (618), Expect = 3e-65
 Identities = 166/492 (33%), Positives = 242/492 (49%), Gaps = 16/492 (3%)
 Frame = -3

Query: 1715 LSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVTAATLFTPM 1536
            LS+S+ M+ K V+++HL  VA+SMTCTG L GFN  GYKA  +S KVQ P   ATL   +
Sbjct: 1113 LSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATLSRSI 1172

Query: 1535 KCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHM--GKGVYEF 1362
            +CFE AA K + D L +VVS+CSWG    IGTG+ F+I+W+ + MS ++ +  G G+Y+F
Sbjct: 1173 QCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSILGGYGLYDF 1232

Query: 1361 LQLLKPIPSGE-----ATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDESHEVGCNFQ 1197
            L+ ++   + +         CL DVD + ED      CL  E N  +T+ +  +     +
Sbjct: 1233 LEAVETTGATKDKAIVPHNYCLYDVDCIPEDK----VCL--EENNQITWTDKPKAEFLME 1286

Query: 1196 -KNRRLETDDCQGWESREPAAME-NGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGK 1023
             + RR           R+P   E N K +  ST+V     +GQ           V +  +
Sbjct: 1287 SEGRRAGMHSTGQKHPRKPNWHEGNTKSSPNSTAVEF---TGQ-----------VFQRRQ 1332

Query: 1022 SAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNS 843
               KS WN D     +  D   W SS     +N  +    +          W        
Sbjct: 1333 LKTKSNWNSD---ATQQDDKPSWYSSNSAGTQNFTIAGSSR-------PGEWNRKNNNRG 1382

Query: 842  EDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTP----GWGSGRRNYSGRTAG 675
            +    + W             +  SS +    GG+  W +     G G+ R    GR   
Sbjct: 1383 QGGGREVWKSEGP-------HRGGSSSNRNQGGGRAVWKSEASHRGSGNNRNRGGGRAVW 1435

Query: 674  TSESRKDWNSKSRE---TFTEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILE 504
             SE+ +   S  +     FT  E++I  +I+PI + VKRIIR           D+KFI+ 
Sbjct: 1436 KSEASRRGGSMRQVASCAFTPVEQQIFEQIEPITKNVKRIIRESRDGIKLPPDDEKFIVT 1495

Query: 503  NVFEYHPDKHAKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTF 324
            NV  YHP++  K++   +YI VD+H+ F GSRC +V+S+DGS  DFSY KCLENY++  +
Sbjct: 1496 NVLMYHPERKKKIAGNGNYITVDRHQVFHGSRCLYVMSSDGSRKDFSYKKCLENYIRAQY 1555

Query: 323  SEHGVSFCRKYF 288
             +   SFCRKYF
Sbjct: 1556 PDAADSFCRKYF 1567


>ref|XP_010238829.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brachypodium
            distachyon]
 gb|KQJ92654.1| hypothetical protein BRADI_4g45065v3 [Brachypodium distachyon]
          Length = 1954

 Score =  241 bits (614), Expect = 1e-64
 Identities = 151/388 (38%), Positives = 206/388 (53%), Gaps = 22/388 (5%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            +FDQ V+RLS +++ VAKG++KDHL+LVANSMTCTG+L GFNTGGY+A FR+ KVQVP T
Sbjct: 1134 SFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFT 1193

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             +TLFTPMKCFE AA+K H D+L  VVSSCSWGK  A+GTG+ FQI+W++ Q+  N+  G
Sbjct: 1194 ESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYG 1253

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELNGYLTFDESHEVGCNF 1200
             G+Y+FL +++     +A    L DVD L EDN +DD CLSPELNG      +H V    
Sbjct: 1254 DGLYDFLAMVR-TDQEKARYTFLDDVDYLVEDNAMDDICLSPELNG------THGVPTFE 1306

Query: 1199 QKNRRLETDDCQGWE--SREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETG 1026
                  +T +   WE  ++  A+ E    A   +  W  W +          A    +TG
Sbjct: 1307 DNFEHQDTQNGNSWENGTKANASWEQNASAGNDSDNWGGWSN----------AAAAADTG 1356

Query: 1025 --KSAEK--SCWNVDLDSGVKSADWQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSI 858
              K A++  S W+V   +   S DW GW         N K  +++    E    + W   
Sbjct: 1357 AAKPADQGNSSWDVPATAENDSTDWGGW--------GNEKAKDNRTVSTEPAELDTWSDR 1408

Query: 857  VTPNSEDLDNQPW-----NC-SATKNLDR-QWSQNTSSPS------NTVDGGKQSWNTPG 717
                  D     W      C  +  NL+R  W++  SSPS         DGG  +W+   
Sbjct: 1409 GAKKGTDGGGGSWGKQTNTCEDSGTNLERNSWAKRPSSPSLSTWAKKNSDGGDGTWDKQA 1468

Query: 716  WGSGRRNY---SGRTAGTSESRKDWNSK 642
              S ++N    S +    S +R  WN K
Sbjct: 1469 -NSCKKNVEQDSWKNMPVSPARNAWNKK 1495



 Score =  121 bits (304), Expect = 7e-25
 Identities = 90/302 (29%), Positives = 129/302 (42%), Gaps = 14/302 (4%)
 Frame = -3

Query: 1142 AAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGKSAEKSCWNVDLDSGVKSADW 963
            AA      AE + +   SW +  A  +     +  G    S   + W     S   +A+ 
Sbjct: 1576 AAKAQTSTAENTDAQDDSWGAVAAKAQTSTAQESWGNVAASPSDNAWKAPPISQTSAAEH 1635

Query: 962  -----QGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLD-NQPWNCSATK 801
                   W         +    E   +    P+ N W +       DLD  QP +     
Sbjct: 1636 TDAHNDSWGIVAAKAQTSTAQQESWGNATASPSDNAWNAAPM----DLDAKQPGSWDG-- 1689

Query: 800  NLDRQWSQNTSSPSNTVDGGK---QSWNTPGWGS-GRRNYSGRTAGTSESRKDWNS-KSR 636
                 WS   +  SN  D      + W + GWG+ G R            R D    + R
Sbjct: 1690 -----WSSALAEDSNKADDSSNKNKGWKSDGWGAKGNRRDQRDNPSMPPMRPDERPPRPR 1744

Query: 635  ETFTEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVE 456
                 E +KIL EI+PIV  V++I R           D+KFI E++ E+HP+K  KV  E
Sbjct: 1745 FEVPAEAKKILREIEPIVSMVRKIFRESCDGVRLPLEDEKFIKESILEHHPEKERKVPGE 1804

Query: 455  VDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTF---SEHGVSFCRKYFG 285
            +D+I V+KH  FQ SRCF+VV  DG+  DFSY KC++NYV+ T+   +EH     + YF 
Sbjct: 1805 IDHIMVNKHHIFQESRCFYVVLADGTHTDFSYNKCMDNYVRKTYTDAAEHADLVSQMYFK 1864

Query: 284  RR 279
            +R
Sbjct: 1865 KR 1866


>ref|XP_020162274.1| DNA-directed RNA polymerase V subunit 1 [Aegilops tauschii subsp.
            tauschii]
          Length = 1947

 Score =  240 bits (613), Expect = 1e-64
 Identities = 152/396 (38%), Positives = 209/396 (52%), Gaps = 12/396 (3%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            +FDQ V+RLS++++ VAKG++KDHL+LVANSMTCTG+L GF+ GGY+A FRS KVQVP T
Sbjct: 1134 SFDQVVQRLSKTMKTVAKGILKDHLVLVANSMTCTGNLNGFHNGGYRATFRSLKVQVPFT 1193

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             ATL TPMKCFE AA+K H DSL SVVSSCSWGK  A+GTG+ FQI+W++ Q+  N+  G
Sbjct: 1194 EATLLTPMKCFEKAAEKCHSDSLGSVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYG 1253

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPEL---NGYLTFDESHEVG 1209
             G+Y+FL L++     +A    L DVD L EDN +DD CLSPE+   +G  TF++  E  
Sbjct: 1254 DGLYDFLALVR-TDQEKAAYTFLDDVDYLVEDNAMDDICLSPEMDGTHGMPTFEDDPEQQ 1312

Query: 1208 CNFQKNRRLETDDCQG--WESREPAAMEN-----GKLAETSTSVWSSWDSGQANKKIFAP 1050
             N +K+   E     G  WE    A  ++     G   E  ++ W+ W +G AN K    
Sbjct: 1313 -NTEKDSSWENGTTAGASWERNANAGNDSGNWGGGSTVENDSTDWAGWGTGPANDKKIV- 1370

Query: 1049 AKCVGETGKSAEKSCWNVDLDSGVKSADWQGW-ESSEPTDMKNGKLTEHKKDCPEFPNAN 873
                  +G+ AE   W    D G K     GW  ++   D    K  E  K C       
Sbjct: 1371 ------SGEPAEPDTW---ADQGAKKDTEGGWNNAAAAADTGAAKPAEQDKSC------- 1414

Query: 872  VWQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTPGWGSGRRNY 693
             W +   P + + D+  W           W    +   N    G    +T    SG+R+ 
Sbjct: 1415 -WNA---PPAVENDSSGWG---------GWGTGNAKDKNIASEGSAEVDTWADQSGKRDT 1461

Query: 692  SGRTAGTSESR-KDWNSKSRETFTEEEEKILAEIDP 588
             G  A   + + KD N +  +      + + A+ DP
Sbjct: 1462 DGGGANWDKMKVKDHNMQQDQWGHVPSQNVDAQDDP 1497



 Score =  134 bits (337), Expect = 5e-29
 Identities = 91/303 (30%), Positives = 131/303 (43%), Gaps = 15/303 (4%)
 Frame = -3

Query: 1142 AAMENGKLAETSTSVWSSWDSGQANKKIF-APAKCVGETGKSAEKSCWNV-DLDSGVKSA 969
            AA      AE   +   SW S  A  + + A  +  G    S   + W    +  G  ++
Sbjct: 1524 AAKAQTSTAEPMDAGNGSWGSVAAKAQTYTAQQESWGNVSASPSDNAWGAAPVSQGPDNS 1583

Query: 968  D------WQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVT----PNSEDLDNQPW 819
            D      W GW S+ P             D  +  + + W S        NS+      W
Sbjct: 1584 DAKQPDSWDGWGSAAPVSQG-----PDNSDAKQPDSWDGWGSAAPVSQGDNSDAKQPDSW 1638

Query: 818  NCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTPGWGSGRRNYSGR-TAGTSESRKDWNSK 642
            +   +   D     +T        G  + W + GW +       R   G    R      
Sbjct: 1639 DGWGSAQAD---DSSTDKWKTNASGNNKGWKSDGWEAKENRRDQRDNPGRPPIRPPVERP 1695

Query: 641  SRETFT--EEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAK 468
             R  +    E +K+L EI+PIV  V++I R           D+KFI+E V E+HP+K  K
Sbjct: 1696 PRPRYELPAEAKKVLQEIEPIVTMVRKIFRESSDGIRLPLEDEKFIIEKVLEHHPEKEKK 1755

Query: 467  VSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYF 288
            VS E+D+I V+KH  FQ SRCF+VVS+DG+  DFSYIKC++NYV+    EH    C  +F
Sbjct: 1756 VSGEIDHIMVNKHHVFQDSRCFYVVSSDGTQTDFSYIKCMDNYVRKNHEEHAELICEMHF 1815

Query: 287  GRR 279
             +R
Sbjct: 1816 KKR 1818


>gb|PAN04046.1| hypothetical protein PAHAL_A00310 [Panicum hallii]
          Length = 1978

 Score =  239 bits (611), Expect = 2e-64
 Identities = 149/388 (38%), Positives = 201/388 (51%), Gaps = 13/388 (3%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS +++MV+KGV+KDHL+LVANSMTCTG+L GFNTGGYKA FRS KVQVP T
Sbjct: 1134 AFDQVVQRLSTTVKMVSKGVLKDHLILVANSMTCTGNLYGFNTGGYKATFRSLKVQVPFT 1193

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             +TLFTPMKCFE AA+K   DSL  VVSSCSWGK  AIGTG+ F+I+W++ Q+  N+  G
Sbjct: 1194 VSTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFEILWNENQLKTNKEYG 1253

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPELNGYL---TFDESHEVG 1209
             G+Y+FL L++     +A    L DVD L  +N +DD CLSPE +G L   TF+++ E  
Sbjct: 1254 DGLYDFLALVR-TDQEKAGYAFLDDVDYLVAENAVDDVCLSPEPDGILGKPTFEDNFEEH 1312

Query: 1208 CNFQKNRRLETDDCQG--WESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVG 1035
             + QK    E        WE    A  ++G         W  W +G A     A  K + 
Sbjct: 1313 -DIQKGSSWENGATMNSTWEQNASAGNDSGD--------WGGWSNGAA-----AATKPLD 1358

Query: 1034 ETGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKN---GKLTEHKKDCPEFPNANVWQ 864
            +     + SCW+V       S DW GW + + T+++    G   +           N W+
Sbjct: 1359 Q-----DNSCWDVHAVVENNSTDWGGWGTEKQTNVEQAAIGTWADKGARVESSAGDNNWE 1413

Query: 863  SIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDGGKQSWNTPGWGSGRRNY--- 693
                 +S   D+ PW        +  W +         DGG  +W         +     
Sbjct: 1414 K---KSSTPEDHDPWGNMPASASENVWDKQKG------DGGDSAWEKQKCSCKEQEMDVD 1464

Query: 692  --SGRTAGTSESRKDWNSKSRETFTEEE 615
              S R   T  S   W+ K  +   EE+
Sbjct: 1465 QDSWRKKTTPPSSNMWDKKKSDGGHEEQ 1492



 Score =  164 bits (414), Expect = 9e-39
 Identities = 128/426 (30%), Positives = 191/426 (44%), Gaps = 21/426 (4%)
 Frame = -3

Query: 1490 TSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMGKGVYEFLQLLKPIPSGEATGQCL 1311
            T+  SS  W K+ + G        W+++ + V+Q       E     K +  G++     
Sbjct: 1472 TTPPSSNMWDKKKSDGGHEEQPSSWNEQMLIVDQDSWGNARE----KKKLHGGDSQWVER 1527

Query: 1310 VDVDEL----AEDNELDDSCLSPELNGYLTFDESHEVGCNFQKNRRLETDDCQGWESREP 1143
            V   +     A+D+  D+  + P  N +   D    VG +  K+     D    W +R+ 
Sbjct: 1528 VSTYKRNRANADDDSWDNMAMPPSNNAW---DAGKGVGRSNTKS-----DGGSSWGNRDN 1579

Query: 1142 AAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGET-GKSAEKSCWNVDLDSGVKSAD 966
                    A   +  WS+   G++N++ +     + ++ GKSA     N ++  G     
Sbjct: 1580 MGTYEHSEAPKESDPWST---GKSNERAWGKTDALQDSWGKSAAD---NNNMQEG----- 1628

Query: 965  WQGWESSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQPWNCSA----TKN 798
               W+    TD      T  ++D         W ++   N+  L N  W   A    T  
Sbjct: 1629 --SWDKIALTD------TNSQQDS--------WGNVAIQNNNTL-NDSWENGAEKVQTSA 1671

Query: 797  LDRQWSQNTSSPSNTVD------GGKQSWNTPGWG------SGRRNYSGRTAGTSESRKD 654
             +  W    ++P+   D      G  + W + GWG      SG+RN SGR     + R  
Sbjct: 1672 AEDSWGNLAATPAGNADAKQSDSGNSKGWKSDGWGGKSGNWSGQRNNSGRPPRRPDERGP 1731

Query: 653  WNSKSRETFTEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKH 474
               + R   T EE+ IL E++PI+  V+RI R           D+KFI E V E HP+K 
Sbjct: 1732 PPPRQRFELTTEEKNILKEVEPILMRVRRISREASDGVRLQPEDEKFIQEKVLENHPEKQ 1791

Query: 473  AKVSVEVDYIKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRK 294
            +KVS  +DYI VDKH+TFQ +RCFFVVSTDGS  DFSY KCLEN+V+  + E   +FC K
Sbjct: 1792 SKVSGAIDYIMVDKHQTFQDTRCFFVVSTDGSRSDFSYFKCLENFVRKNYKEDADTFCMK 1851

Query: 293  YFGRRR 276
            Y   RR
Sbjct: 1852 YLRPRR 1857


>ref|XP_004951807.1| DNA-directed RNA polymerase V subunit 1 [Setaria italica]
          Length = 2038

 Score =  239 bits (611), Expect = 3e-64
 Identities = 145/364 (39%), Positives = 192/364 (52%), Gaps = 27/364 (7%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS +++MVAKGV+KDHL+LVANSMTCTG+LIGFNT GYKA FRS KVQVP T
Sbjct: 1135 AFDQVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRSLKVQVPFT 1194

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             +TLFTPMKCFE AA+K   DSL  VVSSCSWGK  AIGTG+ FQI+W++ Q+  N+  G
Sbjct: 1195 ESTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNENQLKSNKEYG 1254

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPE---LNGYLTFDES-HEV 1212
             G+Y+FL L++     +A    L DVD L E+N +DD CLSPE    +G  TF+++  E 
Sbjct: 1255 DGLYDFLALVR-TDQEKAGYAFLDDVDYLVEENAVDDVCLSPEPDGTHGKPTFEDNVEEQ 1313

Query: 1211 GCNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGE 1032
            G     +   +T     WE    A  ++G         W  W +G A     A  K + +
Sbjct: 1314 GIQNGSSWENDTTMNSSWEQNASAGNDSGD--------WGGWSNGAA-----AATKPLDQ 1360

Query: 1031 TGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLT------------------EH 906
                 + SCW+        S DW GW + + T+ +  ++                   E 
Sbjct: 1361 -----DNSCWDAHATVENNSTDWGGWGTEKQTNGEQAEINTWADKGAGMESSAGDDNWEM 1415

Query: 905  KKDCPEFPNANV----WQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSS-PSNTVDGG 741
            K   PE    N+    W ++  P S       W        D  W + T S     +D  
Sbjct: 1416 KSSAPEKSKKNLDHDTWGNMPAPASASASENTWGEQKGDGGDGAWEKQTGSCKEQGMDVD 1475

Query: 740  KQSW 729
            + SW
Sbjct: 1476 QDSW 1479



 Score =  164 bits (416), Expect = 5e-39
 Identities = 109/357 (30%), Positives = 166/357 (46%), Gaps = 18/357 (5%)
 Frame = -3

Query: 1292 AEDNELDDSCLSPELN------GYLTFDESHEVGCNFQKNRRLETDDCQGWESREPAAME 1131
            A+    D+  ++P  N      G+       + G ++    ++ETD+     S+ P   +
Sbjct: 1552 ADAGSWDNMAMAPSNNAWDAGEGFGRSITKSDAGSSWGNKDKMETDE----HSKIPKEFD 1607

Query: 1130 NGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGKSAEKSCWNVDLDSGVKSADWQGWE 951
                 +++ S W   D+ Q +           +   + E S   + +       D  G  
Sbjct: 1608 PWNTGKSNESSWEKTDALQDSW-----GNSAADNNNTQEGSWDKIAVKDTNSQQDSWGNV 1662

Query: 950  SSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQP------WNCSATKNLDR 789
            + +  + +NG      +  P     + W ++    + + D +       WN +  +N   
Sbjct: 1663 AVQNKNTQNGSWDNGAEKVPTSDAQDSWGNLAATPAGNSDAKQSDSWDGWNAAPAENSQG 1722

Query: 788  QWSQNTSSPSNTVDGGKQSWNTPGWG------SGRRNYSGRTAGTSESRKDWNSKSRETF 627
            + ++ T S      G  + W + GWG      SG+RN SGR     + R     + R   
Sbjct: 1723 KCNETTDS------GDNKGWKSEGWGGKSGNWSGQRNNSGRPPRGPDERGPPPPRQRFEL 1776

Query: 626  TEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDY 447
            T EE+ IL EI+PI+  V+RI R           D+KFILE V E HP+K +KVS  +DY
Sbjct: 1777 TAEEKNILLEIEPIMMRVRRIFREACNGVRLQPEDEKFILEKVLENHPEKQSKVSSAIDY 1836

Query: 446  IKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRR 276
            I VDKHETFQ +RCF+VVSTDGS  DFSY KCLEN+V+ +F E   +FC KY   RR
Sbjct: 1837 ITVDKHETFQDTRCFYVVSTDGSRADFSYFKCLENFVRKSFKEDADTFCMKYLRPRR 1893


>gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria italica]
          Length = 2050

 Score =  239 bits (611), Expect = 3e-64
 Identities = 145/364 (39%), Positives = 192/364 (52%), Gaps = 27/364 (7%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS +++MVAKGV+KDHL+LVANSMTCTG+LIGFNT GYKA FRS KVQVP T
Sbjct: 1147 AFDQVVQRLSTTVKMVAKGVLKDHLILVANSMTCTGNLIGFNTSGYKATFRSLKVQVPFT 1206

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             +TLFTPMKCFE AA+K   DSL  VVSSCSWGK  AIGTG+ FQI+W++ Q+  N+  G
Sbjct: 1207 ESTLFTPMKCFEKAAEKCDSDSLGCVVSSCSWGKHAAIGTGSSFQILWNENQLKSNKEYG 1266

Query: 1379 KGVYEFLQLLKPIPSGEATGQCLVDVDELAEDNELDDSCLSPE---LNGYLTFDES-HEV 1212
             G+Y+FL L++     +A    L DVD L E+N +DD CLSPE    +G  TF+++  E 
Sbjct: 1267 DGLYDFLALVR-TDQEKAGYAFLDDVDYLVEENAVDDVCLSPEPDGTHGKPTFEDNVEEQ 1325

Query: 1211 GCNFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCVGE 1032
            G     +   +T     WE    A  ++G         W  W +G A     A  K + +
Sbjct: 1326 GIQNGSSWENDTTMNSSWEQNASAGNDSGD--------WGGWSNGAA-----AATKPLDQ 1372

Query: 1031 TGKSAEKSCWNVDLDSGVKSADWQGWESSEPTDMKNGKLT------------------EH 906
                 + SCW+        S DW GW + + T+ +  ++                   E 
Sbjct: 1373 -----DNSCWDAHATVENNSTDWGGWGTEKQTNGEQAEINTWADKGAGMESSAGDDNWEM 1427

Query: 905  KKDCPEFPNANV----WQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSS-PSNTVDGG 741
            K   PE    N+    W ++  P S       W        D  W + T S     +D  
Sbjct: 1428 KSSAPEKSKKNLDHDTWGNMPAPASASASENTWGEQKGDGGDGAWEKQTGSCKEQGMDVD 1487

Query: 740  KQSW 729
            + SW
Sbjct: 1488 QDSW 1491



 Score =  164 bits (416), Expect = 5e-39
 Identities = 109/357 (30%), Positives = 166/357 (46%), Gaps = 18/357 (5%)
 Frame = -3

Query: 1292 AEDNELDDSCLSPELN------GYLTFDESHEVGCNFQKNRRLETDDCQGWESREPAAME 1131
            A+    D+  ++P  N      G+       + G ++    ++ETD+     S+ P   +
Sbjct: 1564 ADAGSWDNMAMAPSNNAWDAGEGFGRSITKSDAGSSWGNKDKMETDE----HSKIPKEFD 1619

Query: 1130 NGKLAETSTSVWSSWDSGQANKKIFAPAKCVGETGKSAEKSCWNVDLDSGVKSADWQGWE 951
                 +++ S W   D+ Q +           +   + E S   + +       D  G  
Sbjct: 1620 PWNTGKSNESSWEKTDALQDSW-----GNSAADNNNTQEGSWDKIAVKDTNSQQDSWGNV 1674

Query: 950  SSEPTDMKNGKLTEHKKDCPEFPNANVWQSIVTPNSEDLDNQP------WNCSATKNLDR 789
            + +  + +NG      +  P     + W ++    + + D +       WN +  +N   
Sbjct: 1675 AVQNKNTQNGSWDNGAEKVPTSDAQDSWGNLAATPAGNSDAKQSDSWDGWNAAPAENSQG 1734

Query: 788  QWSQNTSSPSNTVDGGKQSWNTPGWG------SGRRNYSGRTAGTSESRKDWNSKSRETF 627
            + ++ T S      G  + W + GWG      SG+RN SGR     + R     + R   
Sbjct: 1735 KCNETTDS------GDNKGWKSEGWGGKSGNWSGQRNNSGRPPRGPDERGPPPPRQRFEL 1788

Query: 626  TEEEEKILAEIDPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDY 447
            T EE+ IL EI+PI+  V+RI R           D+KFILE V E HP+K +KVS  +DY
Sbjct: 1789 TAEEKNILLEIEPIMMRVRRIFREACNGVRLQPEDEKFILEKVLENHPEKQSKVSSAIDY 1848

Query: 446  IKVDKHETFQGSRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRR 276
            I VDKHETFQ +RCF+VVSTDGS  DFSY KCLEN+V+ +F E   +FC KY   RR
Sbjct: 1849 ITVDKHETFQDTRCFYVVSTDGSRADFSYFKCLENFVRKSFKEDADTFCMKYLRPRR 1905


>ref|XP_021314141.1| DNA-directed RNA polymerase V subunit 1 isoform X2 [Sorghum bicolor]
          Length = 1982

 Score =  233 bits (594), Expect = 4e-62
 Identities = 154/389 (39%), Positives = 202/389 (51%), Gaps = 28/389 (7%)
 Frame = -3

Query: 1739 AFDQAVKRLSRSIRMVAKGVMKDHLLLVANSMTCTGSLIGFNTGGYKALFRSFKVQVPVT 1560
            AFDQ V+RLS +++MV KGV+KDHL+LVANSMTCTGSLIGFN  GYKA FRS KVQVP T
Sbjct: 1135 AFDQVVQRLSSTVKMVNKGVLKDHLILVANSMTCTGSLIGFNIAGYKATFRSLKVQVPFT 1194

Query: 1559 AATLFTPMKCFENAAQKRHFDSLTSVVSSCSWGKRVAIGTGAPFQIIWDKKQMSVNQHMG 1380
             +TLFTPMKCFE AA+K   DSL  VVSS SWGK  A+GTG+ FQI+W++ Q+  N+  G
Sbjct: 1195 ESTLFTPMKCFEKAAEKCDSDSLGCVVSSSSWGKHAAVGTGSSFQILWNENQLKSNKDYG 1254

Query: 1379 KGVYEFLQLLKPIPSGEATG-QCLVDVDELAEDNELDDSCLSPELNGYL---TFDESHEV 1212
             G+Y+FL L++     E TG   L DVD L E+N +DD CLSPE +G +   TF+++ E 
Sbjct: 1255 DGLYDFLALVR--TDQEKTGYMFLDDVDYLLEENAIDDMCLSPEPDGTVGKPTFEDNFEE 1312

Query: 1211 GCNFQKNRRLETDDC--QGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKCV 1038
              N QK    E        WE    AA ++G         W  W SG             
Sbjct: 1313 Q-NIQKGSSWENGITMKSSWEQDASAANDSGD--------WGGWSSGG------------ 1351

Query: 1037 GETGKSAEK-SCWNVDLDSGVKSADWQGWESSEPT------------DMKNGKLTEHKKD 897
            G + K A++ + W V   +     DW GW + +PT            D    K T+ +  
Sbjct: 1352 GASAKPADQDNSWEVHAKAQDNCTDWGGWSTDKPTGEATVSGQPAEMDTWADKGTKMESG 1411

Query: 896  CPEFPNANVWQSIVTPNSEDLDNQPWNCSATKNLDRQWSQNTSSPSNTVDG--------G 741
              +   AN  +   TP + +  N PW  S     +  W +      +  DG        G
Sbjct: 1412 AGD---ANWEKKSSTPEASN-KNDPWGKS-----ENTWDKRKGDGGDGGDGAWEKKSVDG 1462

Query: 740  KQSWNTPG-WGSGRRNYSGRTAGTSESRK 657
              +W+ PG W     N    T G +  +K
Sbjct: 1463 HGNWDHPGNWNGQSLNVDQDTWGNARGKK 1491



 Score =  154 bits (390), Expect = 1e-35
 Identities = 115/346 (33%), Positives = 160/346 (46%), Gaps = 36/346 (10%)
 Frame = -3

Query: 1205 NFQKNRRLETDDCQGWESREPAAMENGKLAETSTSVWSSWDSGQANKKIFAPAKC-VGET 1029
            N   N  + + D   W + E     N K    + S W   D  ++++    P +     T
Sbjct: 1516 NSSYNNVMPSSD-NAWNAGERFGRSNAK--SNAGSSWGEKDKMESDEHPKVPKESDTWNT 1572

Query: 1028 GKSAEKSCWNVDL--DS-GVKSADWQG------WES----SEPTDMKNG--KLTEHKKDC 894
            GKS E    N D   DS GV SA          W+      +P   ++    +   K D 
Sbjct: 1573 GKSNESPWDNTDALQDSWGVNSATHDNNTEDGSWDKVVAIKDPVSQQDSWSNVAIQKNDA 1632

Query: 893  PEFPNANVWQSIVTPNSED----LDNQPWNCSATKNLDRQW----------SQNTSSPSN 756
                  NV +  +   S+D    L   P + S  K  D  W          SQ T+    
Sbjct: 1633 QNDSWDNVAEKALNSASQDSWGHLAATPVSNSDAKQSD-SWDGWNAVPAENSQGTAQWKE 1691

Query: 755  TVDGGKQSWNTPGWG------SGRRNYSGRTAGTSESRKDWNSKSRETFTEEEEKILAEI 594
              D G + W + GWG      S +RN  GR     + R     + R   T EE+KIL E+
Sbjct: 1692 RTDSGNKDWKSDGWGAKSGNWSSQRNNPGRPPRRPDERGPPPPRQRFELTIEEKKILLEV 1751

Query: 593  DPIVQTVKRIIRXXXXXXXXXXXDQKFILENVFEYHPDKHAKVSVEVDYIKVDKHETFQG 414
            +P++  V+RI R           D+KFI E + E+HP+K +KVS E+D+I V+KH TF+ 
Sbjct: 1752 EPLIFRVRRIFREACDGVRLKPEDEKFIQEKILEHHPEKQSKVSSEIDHIMVNKHHTFED 1811

Query: 413  SRCFFVVSTDGSSVDFSYIKCLENYVKTTFSEHGVSFCRKYFGRRR 276
            +RCFFVVSTDGS  DFSY+KCLEN+V+  ++E   SFC KY   RR
Sbjct: 1812 TRCFFVVSTDGSQADFSYLKCLENFVRKNYTEDVDSFCMKYLRPRR 1857