BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00021753
         (791 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   139   6e-34
ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplas...   115   2e-25
ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplas...   114   5e-25
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,...   110   6e-24
gb|OAY77531.1| RNA polymerase sigma factor sigF, chloroplastic [...    94   4e-18
gb|PKU65607.1| RNA polymerase sigma factor sigF, chloroplastic [...    94   6e-18
ref|XP_020676962.1| RNA polymerase sigma factor sigF, chloroplas...    94   6e-18
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]      86   2e-15
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...    86   2e-15
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...    86   3e-15
ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplas...    86   3e-15
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,...    85   5e-15
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...    85   5e-15
ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF,...    84   9e-15
ref|XP_015898520.1| PREDICTED: RNA polymerase sigma factor sigF,...    82   7e-14
gb|OMO73608.1| RNA polymerase sigma-70 [Corchorus olitorius]           81   1e-13
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...    80   2e-13
ref|XP_007027376.2| PREDICTED: RNA polymerase sigma factor sigF,...    79   5e-13
ref|XP_016542774.1| PREDICTED: RNA polymerase sigma factor sigF,...    79   5e-13
gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata]              78   1e-12

>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
           guineensis]
          Length = 570

 Score =  139 bits (349), Expect = 6e-34
 Identities = 90/233 (38%), Positives = 133/233 (57%), Gaps = 17/233 (7%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVAKE 275
           MEAG RLL  SPPP  TR H +N S  +V ML+DQ +   +S+PT  I   F +S+++ E
Sbjct: 1   MEAGRRLL-ASPPPNPTRTHLRNRSPTSVPMLHDQASWTNTSVPTTPIACHFPISVLSHE 59

Query: 276 QQNDHKSAILDKEKADAATSL-----------NDEYDFDHYPRKFRQQVLYHLGSRNQFT 422
           Q +D+K+  + KE+ +   +             ++ +F  Y R  +QQ+LYH      F 
Sbjct: 60  QHDDYKTNCISKEEKNVQDNQQVRSGRSCYEEKEKCEFAQYLRYSKQQLLYHQVFWYPFL 119

Query: 423 TLY-KEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASRGAASF 599
           +LY +EK+ L M +E ++     S+ K +Q +N    + P  VL +  RA+MASR AAS 
Sbjct: 120 SLYTEEKTPLAMAVEPIK-----SDSKGVQLENCADFVRPTEVLALAKRAMMASRKAASL 174

Query: 600 EETSNLLPEQFDECHI-----PGSSMGTIVEEKIFIRSKRRLERQSKKRKVPK 743
            E SN+L  +FDE H       GS++   ++E + +RSKR LER+SKKRKV K
Sbjct: 175 MEESNILAAEFDESHFLSLNHRGSTVDISIKEVMAVRSKRLLERRSKKRKVGK 227


>ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Ananas
           comosus]
 ref|XP_020085185.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Ananas
           comosus]
          Length = 573

 Score =  115 bits (287), Expect = 2e-25
 Identities = 85/247 (34%), Positives = 127/247 (51%), Gaps = 20/247 (8%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVAKE 275
           MEA T +L    PP   RAH +N SS +V M+ +  ++ ++SM T+S+ H    S+++ E
Sbjct: 1   MEARTSIL---APPNLPRAHLRNPSSTSVPMISEHASRIVTSMTTSSLVHRLPASLLSLE 57

Query: 276 QQNDHKSAILDKEKADAAT-------------SLNDEYDFDHYPRKFRQQVLYHLGSRNQ 416
           Q +D K   L +EK   AT               N+EY+F  Y   F++Q++   G   Q
Sbjct: 58  QHHDRKDYYLKEEKVSQATLDKQKVGDSKPLCEENEEYEFGQYLEYFQRQLISRPGLWPQ 117

Query: 417 FTTLYKEKSTLEMWIE-QVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASRGAA 593
             T+ KE +T  M  E  V +  +T   + +Q  NS   +SP  VL++  +A+MA+R A 
Sbjct: 118 -PTINKENTTSIMSKELSVHHSNSTKVAESIQLGNSPDSLSPAVVLSLAKKAMMATRKAT 176

Query: 594 SFEETSNLLPEQFDECHIPGSSMGTIVEE------KIFIRSKRRLERQSKKRKVPKVPKY 755
              + SN+L    DE H  G S     EE      KI ++SKR LER+SKKRK  K P  
Sbjct: 177 LLAQKSNILSAVLDEQHFSGVSDKEFSEEISIKKGKI-VKSKRLLERRSKKRKASKSPSS 235

Query: 756 LDHRVTT 776
           + + V +
Sbjct: 236 IGYEVAS 242


>ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplastic [Asparagus
           officinalis]
 gb|ONK72278.1| uncharacterized protein A4U43_C04F17680 [Asparagus officinalis]
          Length = 582

 Score =  114 bits (284), Expect = 5e-25
 Identities = 84/250 (33%), Positives = 129/250 (51%), Gaps = 24/250 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPP-PRQTRAHFKNS--SSYAVGMLYDQGTKPLSSMPTASITHPFAVSIV 266
           MEAG  LL P+P  P   RAH   +  SS +V ML+DQ T+P++ +P  SI   F  S+ 
Sbjct: 1   MEAGRSLLSPTPSAPNIPRAHHPRNPLSSTSVLMLHDQATRPVTFLPATSIVRQFPPSVY 60

Query: 267 AKEQQNDHKS----------AILDKEKADAATSLNDEYD---FDHYPRKFRQQVLYHLGS 407
            +E  +++ S          A LD+  A+   S+ +E +   FD Y +   +++LY  G 
Sbjct: 61  PQESNSNYNSCLVKEGKMVQATLDRRHAEDGLSICEESEKQKFDQYLKYLERRLLYQPGL 120

Query: 408 RNQFTTLYKEKST-LEMWIEQVENPTT--TSEDKRMQSDNSRKCMSPMHVLTVGTRAVMA 578
            + FT    E++  L M  E V +        D+ +   NS   + P  VL +  +A++A
Sbjct: 121 CSPFTVPCSEENKYLAMSSESVNSGANILAGSDQSLVLQNSLSSVQPGSVLALAKKAMLA 180

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIVEE-----KIFIRSKRRLERQSKKRKVPK 743
           SR AAS  + S++L  +  E +  G  +    EE     +  +RSKRRLERQSK+RKVPK
Sbjct: 181 SRKAASLADKSSILESELREPYFIGLDINRFTEEVAINEETTVRSKRRLERQSKRRKVPK 240

Query: 744 VPKYLDHRVT 773
            P+   + V+
Sbjct: 241 KPENAVYEVS 250


>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
           acuminata subsp. malaccensis]
          Length = 577

 Score =  110 bits (276), Expect = 6e-24
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 19/242 (7%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVAKE 275
           M+A   LL P   P   + H +   + +V ML DQ ++P+  +P   + H    S+++KE
Sbjct: 1   MKACRSLLSPVSIPMVPKNHLRTPYTNSVPMLLDQASQPMIHVPATQVVHHITASVLSKE 60

Query: 276 QQNDHKS-----------AILDKEKADAATSLNDE---YDFDHYPRKFRQQVLYHLGSRN 413
           Q +D K+           A  DK   +A  S ++E   ++F+ Y R    Q+ Y      
Sbjct: 61  QCDDLKTNHLNKVEKSVQATPDKWLTEAGRSCSEEREKHEFNQYLRYLECQLSYQPSLWY 120

Query: 414 QFTTLYKEKSTLEMWIEQVENPTTTSEDKR-MQSDNSRKCMSPMHVLTVGTRAVMASRGA 590
            F  L +EK +L + +   E  T  S D   MQ +N++ C++P  VL +  +A++AS+ A
Sbjct: 121 PFPPLDEEKQSLPVSVGPEETSTCVSGDSSAMQVENTKDCITPADVLALAKKAMIASKIA 180

Query: 591 ASFEETSNLLPEQFDECHI----PGSSMGTIVEEKIFIRSKRRLERQSKKRKVPKVPKYL 758
           AS  E SN+L  + D+ +      GS+  T  +E+  +RS++ LER+SKKRKV K P   
Sbjct: 181 ASLVEQSNILGIEVDKSNFLGFDEGSNDDTFFKEETTVRSRKLLERRSKKRKVSKNPNNF 240

Query: 759 DH 764
            H
Sbjct: 241 VH 242


>gb|OAY77531.1| RNA polymerase sigma factor sigF, chloroplastic [Ananas comosus]
          Length = 470

 Score = 94.0 bits (232), Expect = 4e-18
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
 Frame = +3

Query: 165 SSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVAKEQQNDHKSAILDKEKADAAT---- 332
           S+   V M+ +  ++ ++SM T+S+ H    S+++ EQ +D K   L +EK   AT    
Sbjct: 4   SAGPRVPMISEHASRIVTSMTTSSLVHRLPASLLSLEQHHDRKDYYLKEEKVSQATLDKQ 63

Query: 333 ---------SLNDEYDFDHYPRKFRQQVLYHLGSRNQFTTLYKEKSTLEMWIE-QVENPT 482
                      N+EY+F  Y   F++Q++   G   Q  T+ KE +T  M  E  V +  
Sbjct: 64  KVGDSKPPCEENEEYEFGQYLEYFQRQLISRPGLWPQ-PTINKENTTSIMSKELTVHHSN 122

Query: 483 TTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASRGAASFEETSNLLPEQFDECHIPGSSM 662
           +    + +Q  NS   +SP  VL++  +A+MA+R A    + SN+L    DE H  G S 
Sbjct: 123 SIKVAESIQLGNSPDSLSPAVVLSLAKKAMMATRKATLLAQKSNILSAVLDEQHFSGVSD 182

Query: 663 GTIVEE------KIFIRSKRRLERQSKKRKVPKVPKYLDHRVTT 776
               EE      KI ++SKR LER+SKKRK  K P  + + V +
Sbjct: 183 KEFSEEISIKKGKI-VKSKRLLERRSKKRKASKSPSSIGYEVAS 225


>gb|PKU65607.1| RNA polymerase sigma factor sigF, chloroplastic [Dendrobium
           catenatum]
          Length = 575

 Score = 93.6 bits (231), Expect = 6e-18
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSYA-VGMLYDQGTKPLSSMPTASITHPFAVSIVAK 272
           MEAG  +L+ +PPP  +R H +N  S + V  L+ Q ++ + S PT S    F  SI+ +
Sbjct: 1   MEAGRSVLY-TPPPSISRTHLRNPLSLSSVVRLHGQVSRAIFSTPTKSADRHFNTSILTQ 59

Query: 273 EQQNDHKS-----------AILDKEKADAATSLNDE---YDFDHYPRKFRQQVLYHLGSR 410
           EQ N + S           AI D +  +  +  +DE   + FD Y +   +++LY  G  
Sbjct: 60  EQHNYYSSSYGIQEEKGAQAIFDLQSLEDGSLSSDERGKHHFDVYLKHLERRLLYDPGLW 119

Query: 411 NQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSR-KCMSPMHVLTVGTRAVMASRG 587
             F T Y  +  +    E + N       + M+++ +    M P  VL +  RA+MASR 
Sbjct: 120 YSFLTKYNLEKAVMRTTELINNKKAGVGVELMETEQANTSTMRPEDVLELARRALMASRD 179

Query: 588 AASFEETSNLLPEQF-DECHIPG-SSMGTIVEEKIFIRSKRRLERQSKKRKVPK 743
           AA   E SN    +  ++  +P  SS  +++ EK  +RS++ LERQSKKR V K
Sbjct: 180 AALLAEKSNSFSHELVEKIKVPSESSTESMIGEKKAVRSRKLLERQSKKRNVFK 233


>ref|XP_020676962.1| RNA polymerase sigma factor sigF, chloroplastic [Dendrobium
           catenatum]
          Length = 575

 Score = 93.6 bits (231), Expect = 6e-18
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSYA-VGMLYDQGTKPLSSMPTASITHPFAVSIVAK 272
           MEAG  +L+ +PPP  +R H +N  S + V  L+ Q ++ + S PT S    F  SI+ +
Sbjct: 1   MEAGRSVLY-TPPPSISRTHLRNPLSLSSVVRLHGQVSRAIFSTPTKSADRHFNTSILTQ 59

Query: 273 EQQNDHKS-----------AILDKEKADAATSLNDE---YDFDHYPRKFRQQVLYHLGSR 410
           EQ N + S           AI D +  +  +  +DE   + FD Y +   +++LY  G  
Sbjct: 60  EQHNYYSSSYGIQEEKGAQAIFDLQSLEDGSLSSDERGKHHFDVYLKHLERRLLYDPGLW 119

Query: 411 NQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSR-KCMSPMHVLTVGTRAVMASRG 587
             F T Y  +  +    E + N       + M+++ +    M P  VL +  RA+MASR 
Sbjct: 120 YSFLTKYNLEKAVMRTTELINNKKAGVGVELMETEQANTSTMRPEDVLELARRALMASRD 179

Query: 588 AASFEETSNLLPEQF-DECHIPG-SSMGTIVEEKIFIRSKRRLERQSKKRKVPK 743
           AA   E SN    +  ++  +P  SS  +++ EK  +RS++ LERQSKKR V K
Sbjct: 180 AALLAEKSNSFSHELVEKIKVPSESSTESMIGEKKAVRSRKLLERQSKKRNVFK 233


>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 23/246 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVA 269
           MEAGT +L  +P  PPR    HF+NSSS +V ML+DQ    ++S+PT +I   F  S++ 
Sbjct: 1   MEAGTNILSSTPSFPPR---THFRNSSS-SVLMLHDQVAPAVASIPT-TIARKFPTSVLL 55

Query: 270 KEQQNDHK------------SAILDKEKADAATSLNDEYDFDH--YPRKFRQQVLYHLGS 407
           +EQ+++++             A L+K + +   S ++E   DH  Y   F +Q+L   G 
Sbjct: 56  QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 115

Query: 408 RNQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASR 584
                +    EKS        +    TT  +  M        + P  VL +  +A+ AS+
Sbjct: 116 WYSLPSSQTGEKSPFS---SSIMKSITTDIENSMD-------VKPCDVLALAKKALSASK 165

Query: 585 GAASFEETSNLLPEQFDECHIPGSSMGTI------VEEKIFIRSKRRLERQSKKRKVPKV 746
            A S  E + LL    ++   P  S+G I      +EEK  +RS R LER+SKKR+ PKV
Sbjct: 166 QAVSLYENAKLLGADLEDS--PSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKV 222

Query: 747 PKYLDH 764
             + +H
Sbjct: 223 AVHENH 228


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Vitis vinifera]
          Length = 567

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 23/246 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVA 269
           MEAGT +L  +P  PPR    HF+NSSS +V ML+DQ    ++S+PT +I   F  S++ 
Sbjct: 7   MEAGTNILSSTPSFPPR---THFRNSSS-SVLMLHDQVAPAVASIPT-TIARKFPTSVLL 61

Query: 270 KEQQNDHK------------SAILDKEKADAATSLNDEYDFDH--YPRKFRQQVLYHLGS 407
           +EQ+++++             A L+K + +   S ++E   DH  Y   F +Q+L   G 
Sbjct: 62  QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 121

Query: 408 RNQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASR 584
                +    EKS        +    TT  +  M        + P  VL +  +A+ AS+
Sbjct: 122 WYSLPSSQTGEKSPFS---SSIMKSITTDIENSMD-------VKPCDVLALAKKALSASK 171

Query: 585 GAASFEETSNLLPEQFDECHIPGSSMGTI------VEEKIFIRSKRRLERQSKKRKVPKV 746
            A S  E + LL    ++   P  S+G I      +EEK  +RS R LER+SKKR+ PKV
Sbjct: 172 QAVSLYENAKLLGADLEDS--PSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKV 228

Query: 747 PKYLDH 764
             + +H
Sbjct: 229 AVHENH 234


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Nelumbo nucifera]
          Length = 565

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 77/253 (30%), Positives = 116/253 (45%), Gaps = 23/253 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVA 269
           ME G  L+  +   PPR      KNSSS +V +L++Q    + SMPT SIT  F  S++ 
Sbjct: 1   MEVGRNLVSSASLFPPR---TQLKNSSS-SVTLLHEQANPIVVSMPTTSITRHFPASVLL 56

Query: 270 KEQQNDHK------------SAILDKEKADAATSLNDEYDF---DHYPRKFRQQVLYHLG 404
           +EQ++D +             A+LD+ K +    L +E      D Y   F +Q+LY  G
Sbjct: 57  QEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPG 116

Query: 405 SRNQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMAS 581
                 +LYK EK  L M  +     T  + D R           P   L +  +AV+AS
Sbjct: 117 LWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVR-----------PCDALELAKKAVLAS 165

Query: 582 RGAASFEETSNLLPEQFDECHIPGSSMGTI-----VEEKIFIRSKRRLERQSKKRKVPKV 746
           + AAS  +   L      E  +P      +     + E++ +RSKR LERQSK+R +P+ 
Sbjct: 166 KQAASLAKDYELFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRP 225

Query: 747 PKYLDHRVTTRSA 785
              +    T+R +
Sbjct: 226 KVVVSEASTSRKS 238


>ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplastic [Quercus suber]
 gb|POE50311.1| rna polymerase sigma factor sigf, chloroplastic [Quercus suber]
          Length = 570

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNS----SSYAVGMLYDQGTKPLSSMPTASITHPFAVSI 263
           MEAG  LL  S      R H KN     SS +V ML++Q    ++SMP+  I      S+
Sbjct: 1   MEAGRNLLS-STQSFPLRNHLKNCLASPSSASVLMLHEQAAPAVTSMPSTLIARRSPTSV 59

Query: 264 VAKEQQNDH------------KSAILDKEKADAATSLNDEYDF---DHYPRKFRQQVLYH 398
           + +EQ +++              A+LDK +     S+++E +    D   + F +Q+L+ 
Sbjct: 60  LLQEQHDENGLLLDMFKEDTAPRAMLDKRQMGTGASVHEEKNSGNSDQLVQDFERQLLHW 119

Query: 399 LGSRNQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMA 578
            G  + F +L   K+       Q   P TT  +K M        + P +V+ +  +A+ A
Sbjct: 120 PGLWHLFPSLQTGKNAHSSLSLQ---PVTTDLEKPMD-------VEPCNVVAIAKKALSA 169

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIV----EEKIFIRSKRRLERQSKKRKVPKV 746
           S+ AA   E S L+   FD+    GS   ++V    EE+  +RS R LER+SKKR+VPK 
Sbjct: 170 SKEAALLAEDSKLIGADFDDSPSSGSGSRSLVNLPLEEEKTVRSTRLLERRSKKRRVPKS 229

Query: 747 PKYLDHRVTTRS 782
              +    +TR+
Sbjct: 230 EVMIHETYSTRN 241


>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Phoenix dactylifera]
          Length = 529

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 62/171 (36%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
 Frame = +3

Query: 258 SIVAKEQQNDHKSAILDKEKADAATSLNDEYDFDHYPRKFRQQVLYHLGSRNQFTTLY-K 434
           ++V   Q    +S   +K K + A  L          R F  Q+LYH      F +LY +
Sbjct: 35  NVVDDRQVESGRSCYKEKAKCEVAQCL----------RYFEHQLLYHQVFWYPFLSLYTE 84

Query: 435 EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASRGAASFEETSN 614
           EK+ L M  E ++     S+ K +  +N    + P  VL +  RA+ ASR AAS  E SN
Sbjct: 85  EKTPLAMSTEPIK-----SDSKLVPLENCADFVRPADVLALAKRAMRASRKAASLMEESN 139

Query: 615 LLPEQFDECHI-----PGSSMGTIVEEKIFIRSKRRLERQSKKRKVPKVPK 752
           +L  +FDE H       GS+M   ++E++ +RSKR LER+SKKRKV K  K
Sbjct: 140 ILAAEFDESHFLGLNHRGSTMDISIKEEVAVRSKRLLERRSKKRKVGKNSK 190


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Nelumbo nucifera]
          Length = 568

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 23/253 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVA 269
           ME G  L+  +   PPR T+    +SS   V +L++Q    + SMPT SIT  F  S++ 
Sbjct: 1   MEVGRNLVSSASLFPPR-TQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLL 59

Query: 270 KEQQNDHK------------SAILDKEKADAATSLNDEYDF---DHYPRKFRQQVLYHLG 404
           +EQ++D +             A+LD+ K +    L +E      D Y   F +Q+LY  G
Sbjct: 60  QEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPG 119

Query: 405 SRNQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMAS 581
                 +LYK EK  L M  +     T  + D R           P   L +  +AV+AS
Sbjct: 120 LWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVR-----------PCDALELAKKAVLAS 168

Query: 582 RGAASFEETSNLLPEQFDECHIPGSSMGTI-----VEEKIFIRSKRRLERQSKKRKVPKV 746
           + AAS  +   L      E  +P      +     + E++ +RSKR LERQSK+R +P+ 
Sbjct: 169 KQAASLAKDYELFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRP 228

Query: 747 PKYLDHRVTTRSA 785
              +    T+R +
Sbjct: 229 KVVVSEASTSRKS 241


>ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Vitis vinifera]
          Length = 566

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 23/246 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIVA 269
           MEAGT +L  +P  PPR    HF+NSSS +V ML+DQ    ++S+PT +I   F  S++ 
Sbjct: 7   MEAGTNILSSTPSFPPR---THFRNSSS-SVLMLHDQVAPAVASIPT-TIARKFPTSVLL 61

Query: 270 KEQQNDHK------------SAILDKEKADAATSLNDEYDFDH--YPRKFRQQVLYHLGS 407
           +EQ+++++             A L+K + +   S ++E   DH  Y   F +Q+L   G 
Sbjct: 62  QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 121

Query: 408 RNQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASR 584
                +    EKS        +    TT  +  M        + P  VL +  +A+ AS+
Sbjct: 122 WYSLPSSQTGEKSPFS---SSIMKSITTDIENSMD-------VKPCDVLALAKKALSASK 171

Query: 585 GAASFEETSNLLPEQFDECHIPGSSMGTI------VEEKIFIRSKRRLERQSKKRKVPKV 746
            A S  E + LL    ++     SS+G I      +EEK  +RS R LER+SKKR+ PKV
Sbjct: 172 QAVSLYENAKLLGADLEDSP---SSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKV 227

Query: 747 PKYLDH 764
             + +H
Sbjct: 228 AVHENH 233


>ref|XP_015898520.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
           [Ziziphus jujuba]
          Length = 567

 Score = 81.6 bits (200), Expect = 7e-14
 Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 21/251 (8%)
 Frame = +3

Query: 96  MEAGTRLLHPSP--PPRQTRAHFKNSSSYA-------VGMLYDQGTKPLSSMPTASITHP 248
           MEA   LL  SP  PPR    HF+NS S A       V M  +Q    +SS+P AS+   
Sbjct: 3   MEAARSLLSSSPSFPPR---THFRNSLSSASSPASTSVLMFNEQIASTVSSVPAASMARR 59

Query: 249 FAVSIVAKEQQNDHKS---------AILDKEKADAATSLNDEYDFDHYPR---KFRQQVL 392
           F+ S+V++EQ ++ KS         A+LD+ + D    ++++  F    +    F +Q+L
Sbjct: 60  FSTSVVSQEQGDEFKSLLRVEKANQAMLDRRQVDTGNLVHEDKHFGDSNQLLLDFERQLL 119

Query: 393 YHLGSRNQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAV 572
           +  G  +   +L  +          V + T+ + D           +    V+ +   A+
Sbjct: 120 HWTGFWHLLPSLQTK----------VNSSTSLTVDPSKAGAKKHMDVELCDVVALAKEAL 169

Query: 573 MASRGAASFEETSNLLPEQFDECHIPGSSMGTIVEEKIFIRSKRRLERQSKKRKVPKVPK 752
            AS+ AAS  E S ++    D+ H  G +     +EK  +RS R LER+SKKRKVPK   
Sbjct: 170 SASKEAASLVEESKIIEADSDDSHSLGMANFLGDKEKT-VRSTRLLERRSKKRKVPKSKV 228

Query: 753 YLDHRVTTRSA 785
                 T+R A
Sbjct: 229 LFHENHTSRGA 239


>gb|OMO73608.1| RNA polymerase sigma-70 [Corchorus olitorius]
          Length = 730

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSS----SYAVGMLYDQGTKPLSSMPTASITHPFAVSI 263
           MEA   LL  SPP   +R   KNSS    S +V M ++Q     +S+P  S+   F  S+
Sbjct: 1   MEAARNLLS-SPPTAFSRTQLKNSSFPSSSSSVSMFHEQAGPAATSIPITSVARNFPASV 59

Query: 264 VAKEQQNDHK--------------SAILDKEKADAATSLNDEYDFDHYPRKFRQQVLYHL 401
           + +EQ++D++              S   DK++ +   SL++    ++      +Q L H+
Sbjct: 60  LLQEQRDDNRPQPVLQFFKEDKAYSEANDKQQIENGASLHEGKASNNVGHLELEQQLLHI 119

Query: 402 GSRNQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKC-MSPMHVLTVGTRAVMA 578
               Q  +L          +E  E P++    + + +D      + P +V+ +  +A+ A
Sbjct: 120 PDLKQLLSL----------LESGEYPSSPLNIQSVAADTEEVVGVEPNNVIALAKKALSA 169

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIV---EEKIFIRSKRRLERQSKKRKVPKV 746
           S+ AAS  E  NL  +      +  ++  T+    EE + +RS RRLERQSK+R++PKV
Sbjct: 170 SKQAASLAENLNLDLDYSVSNSLGSANASTLPVEEEEGVIVRSTRRLERQSKRRRLPKV 228


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNS----SSYAVGMLYDQGTKPLSSMPTASITHPFAVSI 263
           MEA   LL P PP   TR   K+S    SS +V M ++Q     +S+P  S+   F  S+
Sbjct: 1   MEAARNLLSP-PPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSV 59

Query: 264 VAKEQQNDHKS--------------AILDKEKADAATSLNDEYDFDHYPRKFRQQVLYHL 401
           + +EQ++D++                  DK++ +   SLN+E   +++ +   ++ L   
Sbjct: 60  LLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLGFEKKLLQW 119

Query: 402 GSRNQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKC-MSPMHVLTVGTRAVMA 578
               Q  +L          +E  ENP++TS  + + +D      + P +++ +  +A+ A
Sbjct: 120 PDLTQLLSL----------LESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSA 169

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIVEEK---IFIRSKRRLERQSKKRKV-PKV 746
           S+ AAS  E   L  +      +  ++  T+  EK   + +RS RRLERQSK+R+V PKV
Sbjct: 170 SKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKV 229


>ref|XP_007027376.2| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
           [Theobroma cacao]
          Length = 568

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNS----SSYAVGMLYDQGTKPLSSMPTASITHPFAVSI 263
           MEA   LL  SPP   TR   K+S    SS +V M ++Q     +S+P  S+   F  S+
Sbjct: 1   MEAARNLLS-SPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSV 59

Query: 264 VAKEQQNDHKS--------------AILDKEKADAATSLNDEYDFDHYPRKFRQQVLYHL 401
           + +EQ++D++                  DK++ +   SLN+E   +++ +   ++ L   
Sbjct: 60  LLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLGFEKKLLQW 119

Query: 402 GSRNQFTTLYKEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKC-MSPMHVLTVGTRAVMA 578
               Q  +L          +E  ENP++TS  + + +D      + P +++ +  +A+ A
Sbjct: 120 PDLTQLLSL----------LESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSA 169

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIVEEK---IFIRSKRRLERQSKKRKV-PKV 746
           S+ AAS  E   L  +      +  ++  T+  EK   + +RS RRLERQSK+R+V PKV
Sbjct: 170 SKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKV 229


>ref|XP_016542774.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Capsicum annuum]
          Length = 568

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 73/239 (30%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKN---SSSYAVGMLYDQGTKPLSSMPTASITHPFAVSIV 266
           ME   + L  SPP    +A  +N   S S +V ML+D     L+S+P A +      S +
Sbjct: 1   MEVAGKNLFSSPPTFSQKAQLRNCPCSISSSVLMLHDHAAPALTSVPHAYLARHVPPSAI 60

Query: 267 AKEQQNDHKS------------AILDKEKADAATSLNDEYDFDHYPR-KFRQQVLYHLGS 407
             EQQ +++             A +D+E  +AA+S  +E D D     K  Q  L H   
Sbjct: 61  NLEQQFENRLEFHLVKEEKTSLATIDRELLEAASSAIEENDVDSEKNIKALQMQLLHWPG 120

Query: 408 RNQFTTLY-KEKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMS--PMHVLTVGTRAVMA 578
              F   Y KEK  L             S DK        K M+  P  V+ +  +A++A
Sbjct: 121 PYSFAPYYLKEKGPL-------------STDKEPLRSKGEKLMNVEPHSVVALAKKALLA 167

Query: 579 SRGAASFEETSNLLPEQFDECHIPGSSMGTIVEEKI----FIRSKRRLERQSKKRKVPK 743
           SR AA   E S LL   FD+ + P      + ++K+     +RS R +ERQS+KR  PK
Sbjct: 168 SREAALLAEDSKLLETTFDDSNFPDFLSTNLADDKLKERRTVRSTRLIERQSRKRGAPK 226


>gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata]
          Length = 562

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 18/250 (7%)
 Frame = +3

Query: 96  MEAGTRLLHPSPPPRQTRAHFKNSSSY-AVGMLYDQGTKPLSSMPTASITHPFAVSIVAK 272
           ME G  LL  SPP    + H +NS    +V ML++     ++S+PT SIT  F  S++ +
Sbjct: 1   MEVGRNLLS-SPPFFSLKPHLRNSPPPPSVTMLHELAAPAVTSVPTTSITRHFPASVLLQ 59

Query: 273 EQQNDHKS-----------AILDKEKADAATSLNDEYD---FDHYPRKFRQQVLYHLGSR 410
           EQ++D +S           A L++ + D   SL  E      D Y + F +Q+LY  G  
Sbjct: 60  EQRDDIRSLLHIREDKPFEATLNRTQMDNDASLIQEKKDCRSDQYLKDFERQLLYWPGLW 119

Query: 411 NQFTTLYK-EKSTLEMWIEQVENPTTTSEDKRMQSDNSRKCMSPMHVLTVGTRAVMASRG 587
               +    EK  L + ++ +        DK +Q            VL++  +A++AS+ 
Sbjct: 120 YLLPSSQSGEKPVLPLSMQSM----APDADKVLQ-------FKACDVLSLAKKALLASKQ 168

Query: 588 AASFEETSNLLPEQFDECHIPGSSMGTI--VEEKIFIRSKRRLERQSKKRKVPKVPKYLD 761
           A S    SN +   FDE   P   +  +   E++I ++S R LERQSKKR+ PK+   L 
Sbjct: 169 AVSLAAESNSIGHDFDE-FTPCLELKNLSPSEKEITVKSTRLLERQSKKRRAPKL-NVLS 226

Query: 762 HRVTTRSAAE 791
           H +++    E
Sbjct: 227 HELSSFRTTE 236