BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00021707
         (2327 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009409884.1| PREDICTED: protein RNA-directed DNA methylat...   250   5e-66
ref|XP_009409883.1| PREDICTED: protein RNA-directed DNA methylat...   250   5e-66
ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylat...   158   7e-36
ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylat...   158   7e-36
ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylat...   158   7e-36
ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylat...   158   7e-36
ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isofo...   141   2e-30
ref|XP_020091607.1| protein RNA-directed DNA methylation 3 isofo...   140   3e-30
ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isofo...   140   4e-30
ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isofo...   140   4e-30
gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas co...   136   4e-29
ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isofo...   136   4e-29
ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylat...   134   3e-28
ref|XP_019198592.1| PREDICTED: protein RNA-directed DNA methylat...   118   2e-23
ref|XP_019198594.1| PREDICTED: protein RNA-directed DNA methylat...   115   2e-22
ref|XP_019198593.1| PREDICTED: protein RNA-directed DNA methylat...   115   2e-22
ref|XP_019198591.1| PREDICTED: protein RNA-directed DNA methylat...   115   2e-22
ref|XP_019198590.1| PREDICTED: protein RNA-directed DNA methylat...   115   2e-22
ref|XP_019198595.1| PREDICTED: protein RNA-directed DNA methylat...   110   7e-21
ref|XP_002311988.1| KOW domain-containing transcription factor f...   108   3e-20

>ref|XP_009409884.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1808

 Score =  250 bits (638), Expect = 5e-66
 Identities = 227/811 (27%), Positives = 314/811 (38%), Gaps = 171/811 (21%)
 Frame = -3

Query: 2289 TWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVGGS 2110
            +WS NH+ GQT++ ER  ++++  R+   H+NNW+ Q  F+  R SSW  GRG H V G 
Sbjct: 1017 SWSKNHNWGQTSSLEREREQDNGHRN---HDNNWSRQNEFNVFRGSSWERGRGFHGVSGC 1073

Query: 2109 VGLDDGDEEGKWISXXXXXXXXXXXACYGQSG---GTRDD-----SFNQIRNWDKGHCAT 1954
            +  D GD+E  W+S              G SG   G RD      S  Q+ NWDKGH A 
Sbjct: 1074 MKHDAGDQE--WLSGRGGGRDEGRGKARGHSGEAGGNRDGLSDTRSVGQVCNWDKGHGAI 1131

Query: 1953 QTSNWTDKQTSGTG------------------------GPPNQDDIRSKNKSFDGHRLSS 1846
            +TS+W ++Q+S                           G   Q    SKNKS  G  LS 
Sbjct: 1132 ETSDWKNQQSSVDSLSNWENDKNADWHKLRNCNQNESLGKTGQMHSWSKNKSLAGQSLSG 1191

Query: 1845 WNNLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER---GTE 1675
            W++  Q+ D + D K VD  S WEK    P+ S S+WE+    +  E +ND +     T 
Sbjct: 1192 WSSFSQDADAKKDAKGVDDASCWEKGTSLPEGS-SNWEKSHAGEQFELSNDDKNKWSTTT 1250

Query: 1674 SSGWQQSSFKDT------------------SREKTV--DG---GWDK-PRVDEPR----- 1582
            +SGW   S K+                   +++ ++  DG   GWDK    DE +     
Sbjct: 1251 TSGWVGDSLKNVPAAPENLHISICRRFIGDNQDMSIVSDGNKPGWDKLSSSDEGKAAGGY 1310

Query: 1581 --NILKA--AAETCSWXXXXXXXXXXXRVSLNKSSNW----TDSQTISSNEA--DAW--- 1441
              + +KA  A +   W                    W     D    +S  A  ++W   
Sbjct: 1311 EWDSMKASGAKQVSGWCGWTDHASEVKAYEKTIRGAWDGPRADESCKNSTGAGINSWEVA 1370

Query: 1440 ---DNKGKGTIAD---------------------------EDSWGKANNSQERKFDVDDN 1351
               D K +G I D                           + +W    NSQ  K D  +N
Sbjct: 1371 VRSDEKARGVILDKSCDWTHSEVSSGNVDAWDMEGKKRTADGNWDTTTNSQREKTDEGNN 1430

Query: 1350 WAGNSNQNEERSSLGCGNQSSCWDAA--------TKSLHQVDEWGTAKDSFAGKSDQWKG 1195
            W  NS +++E  ++  G Q+   + A        T+   QV  W    +S++G+S QWK 
Sbjct: 1431 WGDNSKESKEDFTVQGGYQTDSRNGAVLHSTQPGTEHSGQVSSWERTTNSWSGQSGQWKD 1490

Query: 1194 ISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEE---ADNRDGWNKAXXXXXXXXXXXXX 1024
                D++   W Q   S QS N+ W   KS GEE    D  D W+K              
Sbjct: 1491 RQSNDSKD--WKQGG-SKQSENDTWYGRKSSGEEFGKGDQVDRWSKPREGGHGFGRGRGG 1547

Query: 1023 XXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGDRQSKWNSQ--XXXXXXX 850
                                   G +R  WG GRG N+E  G++Q KWN Q         
Sbjct: 1548 GQNSWDSGSWNKEMDHV------GNQRSGWGRGRGGNNEADGEKQCKWNKQRDFSEDRGS 1601

Query: 849  XXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPG 670
                       R+++Q DNS                 G N G  FDG    +  G  GPG
Sbjct: 1602 SWVRGRGRFGTRDKSQGDNSDGPPNQQGRWSGSRRGWGRNSGYNFDGGWHFSHGGGRGPG 1661

Query: 669  RGNFSLVDSRDNRD-------------NWANEEKKGW----------------------- 598
              +F   D +D+R+             +W + E  GW                       
Sbjct: 1662 HSSFFSSDMKDDRESCGDGSLPRNSVSSWGSNENTGWEKSKDHANSECGGKTNQQHDWSK 1721

Query: 597  ---------------SSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDV 463
                           S+WS DEA      D  E NW RTK+ G    S  +KWST T D+
Sbjct: 1722 GKSHDGDSSGCSKRSSNWSKDEA------DVGEENWARTKEFGVVQSSSWNKWSTNTEDI 1775

Query: 462  SKAAETWSNIEFAQAAGDQGYSWDKAAGSWN 370
             +A+    N + AQAAGDQG SWDKAA SW+
Sbjct: 1776 GEASGICRNSKDAQAAGDQGCSWDKAAVSWD 1806


>ref|XP_009409883.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1809

 Score =  250 bits (638), Expect = 5e-66
 Identities = 227/811 (27%), Positives = 314/811 (38%), Gaps = 171/811 (21%)
 Frame = -3

Query: 2289 TWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVGGS 2110
            +WS NH+ GQT++ ER  ++++  R+   H+NNW+ Q  F+  R SSW  GRG H V G 
Sbjct: 1018 SWSKNHNWGQTSSLEREREQDNGHRN---HDNNWSRQNEFNVFRGSSWERGRGFHGVSGC 1074

Query: 2109 VGLDDGDEEGKWISXXXXXXXXXXXACYGQSG---GTRDD-----SFNQIRNWDKGHCAT 1954
            +  D GD+E  W+S              G SG   G RD      S  Q+ NWDKGH A 
Sbjct: 1075 MKHDAGDQE--WLSGRGGGRDEGRGKARGHSGEAGGNRDGLSDTRSVGQVCNWDKGHGAI 1132

Query: 1953 QTSNWTDKQTSGTG------------------------GPPNQDDIRSKNKSFDGHRLSS 1846
            +TS+W ++Q+S                           G   Q    SKNKS  G  LS 
Sbjct: 1133 ETSDWKNQQSSVDSLSNWENDKNADWHKLRNCNQNESLGKTGQMHSWSKNKSLAGQSLSG 1192

Query: 1845 WNNLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER---GTE 1675
            W++  Q+ D + D K VD  S WEK    P+ S S+WE+    +  E +ND +     T 
Sbjct: 1193 WSSFSQDADAKKDAKGVDDASCWEKGTSLPEGS-SNWEKSHAGEQFELSNDDKNKWSTTT 1251

Query: 1674 SSGWQQSSFKDT------------------SREKTV--DG---GWDK-PRVDEPR----- 1582
            +SGW   S K+                   +++ ++  DG   GWDK    DE +     
Sbjct: 1252 TSGWVGDSLKNVPAAPENLHISICRRFIGDNQDMSIVSDGNKPGWDKLSSSDEGKAAGGY 1311

Query: 1581 --NILKA--AAETCSWXXXXXXXXXXXRVSLNKSSNW----TDSQTISSNEA--DAW--- 1441
              + +KA  A +   W                    W     D    +S  A  ++W   
Sbjct: 1312 EWDSMKASGAKQVSGWCGWTDHASEVKAYEKTIRGAWDGPRADESCKNSTGAGINSWEVA 1371

Query: 1440 ---DNKGKGTIAD---------------------------EDSWGKANNSQERKFDVDDN 1351
               D K +G I D                           + +W    NSQ  K D  +N
Sbjct: 1372 VRSDEKARGVILDKSCDWTHSEVSSGNVDAWDMEGKKRTADGNWDTTTNSQREKTDEGNN 1431

Query: 1350 WAGNSNQNEERSSLGCGNQSSCWDAA--------TKSLHQVDEWGTAKDSFAGKSDQWKG 1195
            W  NS +++E  ++  G Q+   + A        T+   QV  W    +S++G+S QWK 
Sbjct: 1432 WGDNSKESKEDFTVQGGYQTDSRNGAVLHSTQPGTEHSGQVSSWERTTNSWSGQSGQWKD 1491

Query: 1194 ISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEE---ADNRDGWNKAXXXXXXXXXXXXX 1024
                D++   W Q   S QS N+ W   KS GEE    D  D W+K              
Sbjct: 1492 RQSNDSKD--WKQGG-SKQSENDTWYGRKSSGEEFGKGDQVDRWSKPREGGHGFGRGRGG 1548

Query: 1023 XXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGDRQSKWNSQ--XXXXXXX 850
                                   G +R  WG GRG N+E  G++Q KWN Q         
Sbjct: 1549 GQNSWDSGSWNKEMDHV------GNQRSGWGRGRGGNNEADGEKQCKWNKQRDFSEDRGS 1602

Query: 849  XXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPG 670
                       R+++Q DNS                 G N G  FDG    +  G  GPG
Sbjct: 1603 SWVRGRGRFGTRDKSQGDNSDGPPNQQGRWSGSRRGWGRNSGYNFDGGWHFSHGGGRGPG 1662

Query: 669  RGNFSLVDSRDNRD-------------NWANEEKKGW----------------------- 598
              +F   D +D+R+             +W + E  GW                       
Sbjct: 1663 HSSFFSSDMKDDRESCGDGSLPRNSVSSWGSNENTGWEKSKDHANSECGGKTNQQHDWSK 1722

Query: 597  ---------------SSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDV 463
                           S+WS DEA      D  E NW RTK+ G    S  +KWST T D+
Sbjct: 1723 GKSHDGDSSGCSKRSSNWSKDEA------DVGEENWARTKEFGVVQSSSWNKWSTNTEDI 1776

Query: 462  SKAAETWSNIEFAQAAGDQGYSWDKAAGSWN 370
             +A+    N + AQAAGDQG SWDKAA SW+
Sbjct: 1777 GEASGICRNSKDAQAAGDQGCSWDKAAVSWD 1807


>ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Elaeis
            guineensis]
          Length = 2066

 Score =  158 bits (399), Expect = 7e-36
 Identities = 174/710 (24%), Positives = 274/710 (38%), Gaps = 55/710 (7%)
 Frame = -3

Query: 2292 GTWSN--NHDQGQTATW---ERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGD 2128
            G W+   + D G ++ W      W++++   +   +  NWN + +    +++S  GG  +
Sbjct: 1292 GGWNGRKSFDAGCSSGWGGQSSDWKKDEAANNCSPNSLNWNKEASL---KEAS--GGGDN 1346

Query: 2127 HRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
              +    G +      KW S              G++G      +N  R  DK     Q 
Sbjct: 1347 WNMSNLSGGNQSSGWDKWSSGNEQV---------GKAGAGSAKGWNSSRPSDK----KQY 1393

Query: 1947 SNWTDKQTSGT--------GGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVD 1792
              W DK  +G         GG   + D      ++ G R  +WN+          +K  D
Sbjct: 1394 CGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAY-GARDDAWNS----------SKAAD 1442

Query: 1791 GGSNWEKEARTPKDSNSDWERLQTCKNS-EWNNDGERGTESSGWQQSSFKDTSREKTVDG 1615
               NW K A    +  +   +    + + +   DG+   ++ GW ++SFK +      + 
Sbjct: 1443 ---NWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFKSSPGIDGCEK 1499

Query: 1614 GWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDN 1435
              + P +D             SW            VS +  S+W   + +S+++A+ WD 
Sbjct: 1500 AKELPSMDAGG----------SWDKAESNKDKGKGVSWDNPSSWACPEVVSNDKANVWDI 1549

Query: 1434 KGKGTIA-DEDSWGKANNSQERKFDVDDNWAGNSNQN-EERSSLGCGNQSSCWDAATK-- 1267
            KGKG +  +ED WGK++ SQE K +  D W  NS+QN EE      G++++ WDAA    
Sbjct: 1550 KGKGVVRNEEDVWGKSSKSQENKNESKD-WGSNSSQNREEDYKFIGGSKANNWDAAASHW 1608

Query: 1266 ---SLH--QVDEWGTAKDSFAGKSDQW-KGISEMDTEPGAWNQTQFSNQSGNNNWNRPKS 1105
               + H  Q   W  A D  +G+SD W K   + + E G W++T FS+Q  N  W++ KS
Sbjct: 1609 TQSAAHGGQSTSWDKANDPHSGQSDNWGKAREKNEAEAGGWSKTGFSSQIQNARWDQTKS 1668

Query: 1104 FGEE--------ADNRDG--------WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
            FG +         DN D         WNK                               
Sbjct: 1669 FGGDNASNWSKGIDNEDAFRNGRSDNWNKPRNFEGGRGFGRGRGGGRNAGGSGNRDQDGN 1728

Query: 972  XXRPMD--GARRCSWGSGRGRNDETGGDR--QSKWNSQXXXXXXXXXXXXXXXXXXRE-- 811
              +PM+  G  R  WG GR  N+E GG R   S WN Q                      
Sbjct: 1729 WNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSGARG 1788

Query: 810  -RNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPGRGNFSLVDSRDN 634
             R Q D                   G N G   D    S+   S+G GRG     + ++ 
Sbjct: 1789 GRGQGDKWNGPEKERGLGSSRGGGWGRN-GETGDERNESDGRQSYGRGRGWIRSSNGKEE 1847

Query: 633  RDNWANE--EKKGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHS-VADKWSTGTGDV 463
            ++N+ +    K    +W+ND++            WG+  D G S H+  +  WST + D 
Sbjct: 1848 QENFGDGTFPKASTFNWANDQS----------LGWGKL-DKGKSFHAGGSSSWSTQSADW 1896

Query: 462  SK--AAETWSNIEFAQAAGDQGYSWDKAA---GSWNPNNETNGSKGGW*K 328
            SK  A+  W++     ++ + G S  KAA   G+WN  +       GW K
Sbjct: 1897 SKDGASNKWNS---PDSSWNPGASVKKAAGGGGNWNATDPGRSHSSGWDK 1943



 Score =  118 bits (296), Expect = 2e-23
 Identities = 147/672 (21%), Positives = 219/672 (32%), Gaps = 124/672 (18%)
 Frame = -3

Query: 2016 GGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            G    D  N     D+GH A     W  K  SG      + D    +K+ DG   ++ ++
Sbjct: 665  GSNSSDVDNNDHKSDEGHDADP---WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSS 716

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER----GTESS 1669
              Q++           G     +AR   +    W      K S   ++ ++     +++ 
Sbjct: 717  GEQDSQWNMTA----AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 772

Query: 1668 GWQQSSF---KDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLN 1498
            GW +  F    +    + V G WDK R D+  +  K +     W            +S +
Sbjct: 773  GWGRGDFGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDGVSGWDRAATSKDKGKDLSWD 832

Query: 1497 KSSNWTDSQTISSNEADAWDNKGKGTIADED-SWGKANNSQERKFDVD------------ 1357
            +S+NWT  + +S ++A  WD KGKG I++ED SWGKA   +E+  + D            
Sbjct: 833  QSNNWTHPEVVSIDKASCWDVKGKGIISNEDDSWGKAARFREKNTNEDWGKFSVGSSQIK 892

Query: 1356 -------------DNWAGNSNQNEERSSLGCGNQSSCWDAATKSLH-------------- 1258
                         D W   ++ N  +SS+  G QS  WD A + LH              
Sbjct: 893  EKDTARSDGGEQADRWDAAAS-NCTQSSVQHGGQSRSWDKA-RDLHVGRLDNWGKSEDKS 950

Query: 1257 ----------------------------------QVDEWGTAKDSFAGKSDQWKGISEMD 1180
                                              Q   W  AKD   G+SD W  ++E  
Sbjct: 951  KAETRDQNKSGFSNQTQNARWEEPKSFGGDKPGGQTSSWDKAKDPHGGQSDNWGEVNETS 1010

Query: 1179 -TEPGAWNQTQFSNQS--------GNNNWNRPKSFGEE-----------ADNRDGWNKAX 1060
              EPG W++  FS+Q          N  W+   SFG +           +D  D W K  
Sbjct: 1011 RAEPGGWSKAGFSSQGENVRRDEPQNARWDGSTSFGRDNASNCGKVVDGSDQMDNWKKPR 1070

Query: 1059 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGD--RQS 886
                                              DG+++ SWG G  RN+E GGD  +++
Sbjct: 1071 NFEGGHGFGQGRGRGWNAGESGKRDRDGSWN--SDGSQKSSWGKGWDRNNEAGGDGGQEN 1128

Query: 885  KWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGA 706
             WN Q                                                    DG 
Sbjct: 1129 NWNQQTGS-------------------------------------------------DGG 1139

Query: 705  RTSNDSGSWGPGRGNFSLVDSRDNRDNWANE-EKKGWSSWSNDEAGKASNNDQEENNW-- 535
            R S     WG GRG +     R   DNW+    + GW S      G+      E++NW  
Sbjct: 1140 RGSR----WGGGRGRYG-ARGRGEDDNWSGPGARGGWGSARGGGRGRNGGGRGEDDNWSG 1194

Query: 534  -------------GRTKDPGSSSHSVAD-KWSTGTGDVSKAAETWSNIEFAQAAGDQGYS 397
                         GR ++ G  + S  D   S G G        W  ++ +    DQ + 
Sbjct: 1195 PGARGGWGSARGGGRGRNGGGDNASSFDGTRSFGRGRGRGRGCGW--VQSSNLKDDQEHC 1252

Query: 396  WD----KAAGSW 373
            WD    K   SW
Sbjct: 1253 WDGTFQKTPSSW 1264



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 105/447 (23%), Positives = 155/447 (34%), Gaps = 36/447 (8%)
 Frame = -3

Query: 2295 DGTWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVG 2116
            DG+W  N D  Q ++W +GW RN++    G  ENNWN Q   DG R S W GGRG +   
Sbjct: 1097 DGSW--NSDGSQKSSWGKGWDRNNEAGGDGGQENNWNQQTGSDGGRGSRWGGGRGRYGAR 1154

Query: 2115 GSVGLDDG----DEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
            G  G DD        G W S              G++GG R +  N      +G   +  
Sbjct: 1155 GR-GEDDNWSGPGARGGWGSARGGGR--------GRNGGGRGEDDNWSGPGARGGWGSAR 1205

Query: 1947 SNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSW---NNLPQETDTRTDTKFVDGGSNW 1777
                 +   G     + D  RS  +     R   W   +NL  + +   D  F    S+W
Sbjct: 1206 GGGRGRNGGGDNA-SSFDGTRSFGRGRGRGRGCGWVQSSNLKDDQEHCWDGTFQKTPSSW 1264

Query: 1776 EKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPR 1597
              + +TP      W + +   +SE     E   +  GW      D         GW    
Sbjct: 1265 -ADKKTP-----GWGKSK--GSSEIEESAENIDQQGGWNGRKSFDAG----CSSGWGGQS 1312

Query: 1596 VDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWD------- 1438
             D  ++    AA  CS            + +     NW  S     N++  WD       
Sbjct: 1313 SDWKKD---EAANNCSPNSLNWNKEASLKEASGGGDNWNMSNLSGGNQSSGWDKWSSGNE 1369

Query: 1437 NKGKGTIADEDSWGKANNSQERKFD--VDDNWAGNSNQ------NEERSSLGCGNQSS-- 1288
              GK        W  +  S ++++   VD   AGN          +E  +  CG++ +  
Sbjct: 1370 QVGKAGAGSAKGWNSSRPSDKKQYCGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAYG 1429

Query: 1287 CWDAATKSLHQVDEWGTAKD------------SFAGKSDQWKGISEMDTEPGAWNQTQFS 1144
              D A  S    D WG A D            +   K+       +   +   WN+T F 
Sbjct: 1430 ARDDAWNSSKAADNWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFK 1489

Query: 1143 NQSGNNNWNRPKSFGEEADNRDGWNKA 1063
            +  G +   + K      D    W+KA
Sbjct: 1490 SSPGIDGCEKAKEL-PSMDAGGSWDKA 1515



 Score = 69.3 bits (168), Expect = 3e-08
 Identities = 78/366 (21%), Positives = 130/366 (35%), Gaps = 36/366 (9%)
 Frame = -3

Query: 2295 DGTWSN--NHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHR 2122
            DG W+     + G  + W RG   N++       ++NWN Q++F G   SSW  G G   
Sbjct: 1726 DGNWNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSG 1785

Query: 2121 VGGSVGLDD---GDEEGKWISXXXXXXXXXXXACYGQSGGTRDD--------SFNQIRNW 1975
              G  G  D   G E+ + +              +G++G T D+        S+ + R W
Sbjct: 1786 ARGGRGQGDKWNGPEKERGLGSSRGGG-------WGRNGETGDERNESDGRQSYGRGRGW 1838

Query: 1974 --------------DKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
                          D       T NW + Q+ G G          K KSF     SSW+ 
Sbjct: 1839 IRSSNGKEEQENFGDGTFPKASTFNWANDQSLGWGK-------LDKGKSFHAGGSSSWST 1891

Query: 1836 LPQETDTRTD---TKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSG 1666
              Q  D   D    K+    S+W   A   K +              WN      + SSG
Sbjct: 1892 --QSADWSKDGASNKWNSPDSSWNPGASVKKAAGG---------GGNWNATDPGRSHSSG 1940

Query: 1665 WQQSSFKDTSREK---TVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSL-- 1501
            W + S  +    K     +GGW+  +             +  W           + ++  
Sbjct: 1941 WDKCSSGNEQAGKAGVAAEGGWNSSKP-------SGKEHSFGWDDKILAGDEAGKKTVGG 1993

Query: 1500 -NKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNE 1324
             N  +NW  +++    ++ AWD    G   +E++     +S+ +    +D  +G    + 
Sbjct: 1994 NNGGNNWNTTKSAGGGQSSAWDKSSSG---NEEAVAAEISSKAK----EDEGSGRQGSSW 2046

Query: 1323 ERSSLG 1306
            E+++ G
Sbjct: 2047 EKAAAG 2052


>ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Elaeis
            guineensis]
          Length = 2067

 Score =  158 bits (399), Expect = 7e-36
 Identities = 174/710 (24%), Positives = 274/710 (38%), Gaps = 55/710 (7%)
 Frame = -3

Query: 2292 GTWSN--NHDQGQTATW---ERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGD 2128
            G W+   + D G ++ W      W++++   +   +  NWN + +    +++S  GG  +
Sbjct: 1293 GGWNGRKSFDAGCSSGWGGQSSDWKKDEAANNCSPNSLNWNKEASL---KEAS--GGGDN 1347

Query: 2127 HRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
              +    G +      KW S              G++G      +N  R  DK     Q 
Sbjct: 1348 WNMSNLSGGNQSSGWDKWSSGNEQV---------GKAGAGSAKGWNSSRPSDK----KQY 1394

Query: 1947 SNWTDKQTSGT--------GGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVD 1792
              W DK  +G         GG   + D      ++ G R  +WN+          +K  D
Sbjct: 1395 CGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAY-GARDDAWNS----------SKAAD 1443

Query: 1791 GGSNWEKEARTPKDSNSDWERLQTCKNS-EWNNDGERGTESSGWQQSSFKDTSREKTVDG 1615
               NW K A    +  +   +    + + +   DG+   ++ GW ++SFK +      + 
Sbjct: 1444 ---NWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFKSSPGIDGCEK 1500

Query: 1614 GWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDN 1435
              + P +D             SW            VS +  S+W   + +S+++A+ WD 
Sbjct: 1501 AKELPSMDAGG----------SWDKAESNKDKGKGVSWDNPSSWACPEVVSNDKANVWDI 1550

Query: 1434 KGKGTIA-DEDSWGKANNSQERKFDVDDNWAGNSNQN-EERSSLGCGNQSSCWDAATK-- 1267
            KGKG +  +ED WGK++ SQE K +  D W  NS+QN EE      G++++ WDAA    
Sbjct: 1551 KGKGVVRNEEDVWGKSSKSQENKNESKD-WGSNSSQNREEDYKFIGGSKANNWDAAASHW 1609

Query: 1266 ---SLH--QVDEWGTAKDSFAGKSDQW-KGISEMDTEPGAWNQTQFSNQSGNNNWNRPKS 1105
               + H  Q   W  A D  +G+SD W K   + + E G W++T FS+Q  N  W++ KS
Sbjct: 1610 TQSAAHGGQSTSWDKANDPHSGQSDNWGKAREKNEAEAGGWSKTGFSSQIQNARWDQTKS 1669

Query: 1104 FGEE--------ADNRDG--------WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
            FG +         DN D         WNK                               
Sbjct: 1670 FGGDNASNWSKGIDNEDAFRNGRSDNWNKPRNFEGGRGFGRGRGGGRNAGGSGNRDQDGN 1729

Query: 972  XXRPMD--GARRCSWGSGRGRNDETGGDR--QSKWNSQXXXXXXXXXXXXXXXXXXRE-- 811
              +PM+  G  R  WG GR  N+E GG R   S WN Q                      
Sbjct: 1730 WNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSGARG 1789

Query: 810  -RNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPGRGNFSLVDSRDN 634
             R Q D                   G N G   D    S+   S+G GRG     + ++ 
Sbjct: 1790 GRGQGDKWNGPEKERGLGSSRGGGWGRN-GETGDERNESDGRQSYGRGRGWIRSSNGKEE 1848

Query: 633  RDNWANE--EKKGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHS-VADKWSTGTGDV 463
            ++N+ +    K    +W+ND++            WG+  D G S H+  +  WST + D 
Sbjct: 1849 QENFGDGTFPKASTFNWANDQS----------LGWGKL-DKGKSFHAGGSSSWSTQSADW 1897

Query: 462  SK--AAETWSNIEFAQAAGDQGYSWDKAA---GSWNPNNETNGSKGGW*K 328
            SK  A+  W++     ++ + G S  KAA   G+WN  +       GW K
Sbjct: 1898 SKDGASNKWNS---PDSSWNPGASVKKAAGGGGNWNATDPGRSHSSGWDK 1944



 Score =  118 bits (296), Expect = 2e-23
 Identities = 147/672 (21%), Positives = 219/672 (32%), Gaps = 124/672 (18%)
 Frame = -3

Query: 2016 GGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            G    D  N     D+GH A     W  K  SG      + D    +K+ DG   ++ ++
Sbjct: 666  GSNSSDVDNNDHKSDEGHDADP---WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSS 717

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER----GTESS 1669
              Q++           G     +AR   +    W      K S   ++ ++     +++ 
Sbjct: 718  GEQDSQWNMTA----AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 773

Query: 1668 GWQQSSF---KDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLN 1498
            GW +  F    +    + V G WDK R D+  +  K +     W            +S +
Sbjct: 774  GWGRGDFGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDGVSGWDRAATSKDKGKDLSWD 833

Query: 1497 KSSNWTDSQTISSNEADAWDNKGKGTIADED-SWGKANNSQERKFDVD------------ 1357
            +S+NWT  + +S ++A  WD KGKG I++ED SWGKA   +E+  + D            
Sbjct: 834  QSNNWTHPEVVSIDKASCWDVKGKGIISNEDDSWGKAARFREKNTNEDWGKFSVGSSQIK 893

Query: 1356 -------------DNWAGNSNQNEERSSLGCGNQSSCWDAATKSLH-------------- 1258
                         D W   ++ N  +SS+  G QS  WD A + LH              
Sbjct: 894  EKDTARSDGGEQADRWDAAAS-NCTQSSVQHGGQSRSWDKA-RDLHVGRLDNWGKSEDKS 951

Query: 1257 ----------------------------------QVDEWGTAKDSFAGKSDQWKGISEMD 1180
                                              Q   W  AKD   G+SD W  ++E  
Sbjct: 952  KAETRDQNKSGFSNQTQNARWEEPKSFGGDKPGGQTSSWDKAKDPHGGQSDNWGEVNETS 1011

Query: 1179 -TEPGAWNQTQFSNQS--------GNNNWNRPKSFGEE-----------ADNRDGWNKAX 1060
              EPG W++  FS+Q          N  W+   SFG +           +D  D W K  
Sbjct: 1012 RAEPGGWSKAGFSSQGENVRRDEPQNARWDGSTSFGRDNASNCGKVVDGSDQMDNWKKPR 1071

Query: 1059 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGD--RQS 886
                                              DG+++ SWG G  RN+E GGD  +++
Sbjct: 1072 NFEGGHGFGQGRGRGWNAGESGKRDRDGSWN--SDGSQKSSWGKGWDRNNEAGGDGGQEN 1129

Query: 885  KWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGA 706
             WN Q                                                    DG 
Sbjct: 1130 NWNQQTGS-------------------------------------------------DGG 1140

Query: 705  RTSNDSGSWGPGRGNFSLVDSRDNRDNWANE-EKKGWSSWSNDEAGKASNNDQEENNW-- 535
            R S     WG GRG +     R   DNW+    + GW S      G+      E++NW  
Sbjct: 1141 RGSR----WGGGRGRYG-ARGRGEDDNWSGPGARGGWGSARGGGRGRNGGGRGEDDNWSG 1195

Query: 534  -------------GRTKDPGSSSHSVAD-KWSTGTGDVSKAAETWSNIEFAQAAGDQGYS 397
                         GR ++ G  + S  D   S G G        W  ++ +    DQ + 
Sbjct: 1196 PGARGGWGSARGGGRGRNGGGDNASSFDGTRSFGRGRGRGRGCGW--VQSSNLKDDQEHC 1253

Query: 396  WD----KAAGSW 373
            WD    K   SW
Sbjct: 1254 WDGTFQKTPSSW 1265



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 105/447 (23%), Positives = 155/447 (34%), Gaps = 36/447 (8%)
 Frame = -3

Query: 2295 DGTWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVG 2116
            DG+W  N D  Q ++W +GW RN++    G  ENNWN Q   DG R S W GGRG +   
Sbjct: 1098 DGSW--NSDGSQKSSWGKGWDRNNEAGGDGGQENNWNQQTGSDGGRGSRWGGGRGRYGAR 1155

Query: 2115 GSVGLDDG----DEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
            G  G DD        G W S              G++GG R +  N      +G   +  
Sbjct: 1156 GR-GEDDNWSGPGARGGWGSARGGGR--------GRNGGGRGEDDNWSGPGARGGWGSAR 1206

Query: 1947 SNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSW---NNLPQETDTRTDTKFVDGGSNW 1777
                 +   G     + D  RS  +     R   W   +NL  + +   D  F    S+W
Sbjct: 1207 GGGRGRNGGGDNA-SSFDGTRSFGRGRGRGRGCGWVQSSNLKDDQEHCWDGTFQKTPSSW 1265

Query: 1776 EKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPR 1597
              + +TP      W + +   +SE     E   +  GW      D         GW    
Sbjct: 1266 -ADKKTP-----GWGKSK--GSSEIEESAENIDQQGGWNGRKSFDAG----CSSGWGGQS 1313

Query: 1596 VDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWD------- 1438
             D  ++    AA  CS            + +     NW  S     N++  WD       
Sbjct: 1314 SDWKKD---EAANNCSPNSLNWNKEASLKEASGGGDNWNMSNLSGGNQSSGWDKWSSGNE 1370

Query: 1437 NKGKGTIADEDSWGKANNSQERKFD--VDDNWAGNSNQ------NEERSSLGCGNQSS-- 1288
              GK        W  +  S ++++   VD   AGN          +E  +  CG++ +  
Sbjct: 1371 QVGKAGAGSAKGWNSSRPSDKKQYCGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAYG 1430

Query: 1287 CWDAATKSLHQVDEWGTAKD------------SFAGKSDQWKGISEMDTEPGAWNQTQFS 1144
              D A  S    D WG A D            +   K+       +   +   WN+T F 
Sbjct: 1431 ARDDAWNSSKAADNWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFK 1490

Query: 1143 NQSGNNNWNRPKSFGEEADNRDGWNKA 1063
            +  G +   + K      D    W+KA
Sbjct: 1491 SSPGIDGCEKAKEL-PSMDAGGSWDKA 1516



 Score = 69.3 bits (168), Expect = 3e-08
 Identities = 78/366 (21%), Positives = 130/366 (35%), Gaps = 36/366 (9%)
 Frame = -3

Query: 2295 DGTWSN--NHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHR 2122
            DG W+     + G  + W RG   N++       ++NWN Q++F G   SSW  G G   
Sbjct: 1727 DGNWNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSG 1786

Query: 2121 VGGSVGLDD---GDEEGKWISXXXXXXXXXXXACYGQSGGTRDD--------SFNQIRNW 1975
              G  G  D   G E+ + +              +G++G T D+        S+ + R W
Sbjct: 1787 ARGGRGQGDKWNGPEKERGLGSSRGGG-------WGRNGETGDERNESDGRQSYGRGRGW 1839

Query: 1974 --------------DKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
                          D       T NW + Q+ G G          K KSF     SSW+ 
Sbjct: 1840 IRSSNGKEEQENFGDGTFPKASTFNWANDQSLGWGK-------LDKGKSFHAGGSSSWST 1892

Query: 1836 LPQETDTRTD---TKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSG 1666
              Q  D   D    K+    S+W   A   K +              WN      + SSG
Sbjct: 1893 --QSADWSKDGASNKWNSPDSSWNPGASVKKAAGG---------GGNWNATDPGRSHSSG 1941

Query: 1665 WQQSSFKDTSREK---TVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSL-- 1501
            W + S  +    K     +GGW+  +             +  W           + ++  
Sbjct: 1942 WDKCSSGNEQAGKAGVAAEGGWNSSKP-------SGKEHSFGWDDKILAGDEAGKKTVGG 1994

Query: 1500 -NKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNE 1324
             N  +NW  +++    ++ AWD    G   +E++     +S+ +    +D  +G    + 
Sbjct: 1995 NNGGNNWNTTKSAGGGQSSAWDKSSSG---NEEAVAAEISSKAK----EDEGSGRQGSSW 2047

Query: 1323 ERSSLG 1306
            E+++ G
Sbjct: 2048 EKAAAG 2053


>ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Elaeis
            guineensis]
          Length = 2068

 Score =  158 bits (399), Expect = 7e-36
 Identities = 174/710 (24%), Positives = 274/710 (38%), Gaps = 55/710 (7%)
 Frame = -3

Query: 2292 GTWSN--NHDQGQTATW---ERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGD 2128
            G W+   + D G ++ W      W++++   +   +  NWN + +    +++S  GG  +
Sbjct: 1294 GGWNGRKSFDAGCSSGWGGQSSDWKKDEAANNCSPNSLNWNKEASL---KEAS--GGGDN 1348

Query: 2127 HRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
              +    G +      KW S              G++G      +N  R  DK     Q 
Sbjct: 1349 WNMSNLSGGNQSSGWDKWSSGNEQV---------GKAGAGSAKGWNSSRPSDK----KQY 1395

Query: 1947 SNWTDKQTSGT--------GGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVD 1792
              W DK  +G         GG   + D      ++ G R  +WN+          +K  D
Sbjct: 1396 CGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAY-GARDDAWNS----------SKAAD 1444

Query: 1791 GGSNWEKEARTPKDSNSDWERLQTCKNS-EWNNDGERGTESSGWQQSSFKDTSREKTVDG 1615
               NW K A    +  +   +    + + +   DG+   ++ GW ++SFK +      + 
Sbjct: 1445 ---NWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFKSSPGIDGCEK 1501

Query: 1614 GWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDN 1435
              + P +D             SW            VS +  S+W   + +S+++A+ WD 
Sbjct: 1502 AKELPSMDAGG----------SWDKAESNKDKGKGVSWDNPSSWACPEVVSNDKANVWDI 1551

Query: 1434 KGKGTIA-DEDSWGKANNSQERKFDVDDNWAGNSNQN-EERSSLGCGNQSSCWDAATK-- 1267
            KGKG +  +ED WGK++ SQE K +  D W  NS+QN EE      G++++ WDAA    
Sbjct: 1552 KGKGVVRNEEDVWGKSSKSQENKNESKD-WGSNSSQNREEDYKFIGGSKANNWDAAASHW 1610

Query: 1266 ---SLH--QVDEWGTAKDSFAGKSDQW-KGISEMDTEPGAWNQTQFSNQSGNNNWNRPKS 1105
               + H  Q   W  A D  +G+SD W K   + + E G W++T FS+Q  N  W++ KS
Sbjct: 1611 TQSAAHGGQSTSWDKANDPHSGQSDNWGKAREKNEAEAGGWSKTGFSSQIQNARWDQTKS 1670

Query: 1104 FGEE--------ADNRDG--------WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
            FG +         DN D         WNK                               
Sbjct: 1671 FGGDNASNWSKGIDNEDAFRNGRSDNWNKPRNFEGGRGFGRGRGGGRNAGGSGNRDQDGN 1730

Query: 972  XXRPMD--GARRCSWGSGRGRNDETGGDR--QSKWNSQXXXXXXXXXXXXXXXXXXRE-- 811
              +PM+  G  R  WG GR  N+E GG R   S WN Q                      
Sbjct: 1731 WNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSGARG 1790

Query: 810  -RNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPGRGNFSLVDSRDN 634
             R Q D                   G N G   D    S+   S+G GRG     + ++ 
Sbjct: 1791 GRGQGDKWNGPEKERGLGSSRGGGWGRN-GETGDERNESDGRQSYGRGRGWIRSSNGKEE 1849

Query: 633  RDNWANE--EKKGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHS-VADKWSTGTGDV 463
            ++N+ +    K    +W+ND++            WG+  D G S H+  +  WST + D 
Sbjct: 1850 QENFGDGTFPKASTFNWANDQS----------LGWGKL-DKGKSFHAGGSSSWSTQSADW 1898

Query: 462  SK--AAETWSNIEFAQAAGDQGYSWDKAA---GSWNPNNETNGSKGGW*K 328
            SK  A+  W++     ++ + G S  KAA   G+WN  +       GW K
Sbjct: 1899 SKDGASNKWNS---PDSSWNPGASVKKAAGGGGNWNATDPGRSHSSGWDK 1945



 Score =  118 bits (296), Expect = 2e-23
 Identities = 147/672 (21%), Positives = 219/672 (32%), Gaps = 124/672 (18%)
 Frame = -3

Query: 2016 GGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            G    D  N     D+GH A     W  K  SG      + D    +K+ DG   ++ ++
Sbjct: 667  GSNSSDVDNNDHKSDEGHDADP---WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSS 718

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER----GTESS 1669
              Q++           G     +AR   +    W      K S   ++ ++     +++ 
Sbjct: 719  GEQDSQWNMTA----AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 774

Query: 1668 GWQQSSF---KDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLN 1498
            GW +  F    +    + V G WDK R D+  +  K +     W            +S +
Sbjct: 775  GWGRGDFGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDGVSGWDRAATSKDKGKDLSWD 834

Query: 1497 KSSNWTDSQTISSNEADAWDNKGKGTIADED-SWGKANNSQERKFDVD------------ 1357
            +S+NWT  + +S ++A  WD KGKG I++ED SWGKA   +E+  + D            
Sbjct: 835  QSNNWTHPEVVSIDKASCWDVKGKGIISNEDDSWGKAARFREKNTNEDWGKFSVGSSQIK 894

Query: 1356 -------------DNWAGNSNQNEERSSLGCGNQSSCWDAATKSLH-------------- 1258
                         D W   ++ N  +SS+  G QS  WD A + LH              
Sbjct: 895  EKDTARSDGGEQADRWDAAAS-NCTQSSVQHGGQSRSWDKA-RDLHVGRLDNWGKSEDKS 952

Query: 1257 ----------------------------------QVDEWGTAKDSFAGKSDQWKGISEMD 1180
                                              Q   W  AKD   G+SD W  ++E  
Sbjct: 953  KAETRDQNKSGFSNQTQNARWEEPKSFGGDKPGGQTSSWDKAKDPHGGQSDNWGEVNETS 1012

Query: 1179 -TEPGAWNQTQFSNQS--------GNNNWNRPKSFGEE-----------ADNRDGWNKAX 1060
              EPG W++  FS+Q          N  W+   SFG +           +D  D W K  
Sbjct: 1013 RAEPGGWSKAGFSSQGENVRRDEPQNARWDGSTSFGRDNASNCGKVVDGSDQMDNWKKPR 1072

Query: 1059 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGD--RQS 886
                                              DG+++ SWG G  RN+E GGD  +++
Sbjct: 1073 NFEGGHGFGQGRGRGWNAGESGKRDRDGSWN--SDGSQKSSWGKGWDRNNEAGGDGGQEN 1130

Query: 885  KWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGA 706
             WN Q                                                    DG 
Sbjct: 1131 NWNQQTGS-------------------------------------------------DGG 1141

Query: 705  RTSNDSGSWGPGRGNFSLVDSRDNRDNWANE-EKKGWSSWSNDEAGKASNNDQEENNW-- 535
            R S     WG GRG +     R   DNW+    + GW S      G+      E++NW  
Sbjct: 1142 RGSR----WGGGRGRYG-ARGRGEDDNWSGPGARGGWGSARGGGRGRNGGGRGEDDNWSG 1196

Query: 534  -------------GRTKDPGSSSHSVAD-KWSTGTGDVSKAAETWSNIEFAQAAGDQGYS 397
                         GR ++ G  + S  D   S G G        W  ++ +    DQ + 
Sbjct: 1197 PGARGGWGSARGGGRGRNGGGDNASSFDGTRSFGRGRGRGRGCGW--VQSSNLKDDQEHC 1254

Query: 396  WD----KAAGSW 373
            WD    K   SW
Sbjct: 1255 WDGTFQKTPSSW 1266



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 105/447 (23%), Positives = 155/447 (34%), Gaps = 36/447 (8%)
 Frame = -3

Query: 2295 DGTWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVG 2116
            DG+W  N D  Q ++W +GW RN++    G  ENNWN Q   DG R S W GGRG +   
Sbjct: 1099 DGSW--NSDGSQKSSWGKGWDRNNEAGGDGGQENNWNQQTGSDGGRGSRWGGGRGRYGAR 1156

Query: 2115 GSVGLDDG----DEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
            G  G DD        G W S              G++GG R +  N      +G   +  
Sbjct: 1157 GR-GEDDNWSGPGARGGWGSARGGGR--------GRNGGGRGEDDNWSGPGARGGWGSAR 1207

Query: 1947 SNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSW---NNLPQETDTRTDTKFVDGGSNW 1777
                 +   G     + D  RS  +     R   W   +NL  + +   D  F    S+W
Sbjct: 1208 GGGRGRNGGGDNA-SSFDGTRSFGRGRGRGRGCGWVQSSNLKDDQEHCWDGTFQKTPSSW 1266

Query: 1776 EKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPR 1597
              + +TP      W + +   +SE     E   +  GW      D         GW    
Sbjct: 1267 -ADKKTP-----GWGKSK--GSSEIEESAENIDQQGGWNGRKSFDAG----CSSGWGGQS 1314

Query: 1596 VDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWD------- 1438
             D  ++    AA  CS            + +     NW  S     N++  WD       
Sbjct: 1315 SDWKKD---EAANNCSPNSLNWNKEASLKEASGGGDNWNMSNLSGGNQSSGWDKWSSGNE 1371

Query: 1437 NKGKGTIADEDSWGKANNSQERKFD--VDDNWAGNSNQ------NEERSSLGCGNQSS-- 1288
              GK        W  +  S ++++   VD   AGN          +E  +  CG++ +  
Sbjct: 1372 QVGKAGAGSAKGWNSSRPSDKKQYCGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAYG 1431

Query: 1287 CWDAATKSLHQVDEWGTAKD------------SFAGKSDQWKGISEMDTEPGAWNQTQFS 1144
              D A  S    D WG A D            +   K+       +   +   WN+T F 
Sbjct: 1432 ARDDAWNSSKAADNWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFK 1491

Query: 1143 NQSGNNNWNRPKSFGEEADNRDGWNKA 1063
            +  G +   + K      D    W+KA
Sbjct: 1492 SSPGIDGCEKAKEL-PSMDAGGSWDKA 1517



 Score = 69.3 bits (168), Expect = 3e-08
 Identities = 78/366 (21%), Positives = 130/366 (35%), Gaps = 36/366 (9%)
 Frame = -3

Query: 2295 DGTWSN--NHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHR 2122
            DG W+     + G  + W RG   N++       ++NWN Q++F G   SSW  G G   
Sbjct: 1728 DGNWNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSG 1787

Query: 2121 VGGSVGLDD---GDEEGKWISXXXXXXXXXXXACYGQSGGTRDD--------SFNQIRNW 1975
              G  G  D   G E+ + +              +G++G T D+        S+ + R W
Sbjct: 1788 ARGGRGQGDKWNGPEKERGLGSSRGGG-------WGRNGETGDERNESDGRQSYGRGRGW 1840

Query: 1974 --------------DKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
                          D       T NW + Q+ G G          K KSF     SSW+ 
Sbjct: 1841 IRSSNGKEEQENFGDGTFPKASTFNWANDQSLGWGK-------LDKGKSFHAGGSSSWST 1893

Query: 1836 LPQETDTRTD---TKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSG 1666
              Q  D   D    K+    S+W   A   K +              WN      + SSG
Sbjct: 1894 --QSADWSKDGASNKWNSPDSSWNPGASVKKAAGG---------GGNWNATDPGRSHSSG 1942

Query: 1665 WQQSSFKDTSREK---TVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSL-- 1501
            W + S  +    K     +GGW+  +             +  W           + ++  
Sbjct: 1943 WDKCSSGNEQAGKAGVAAEGGWNSSKP-------SGKEHSFGWDDKILAGDEAGKKTVGG 1995

Query: 1500 -NKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNE 1324
             N  +NW  +++    ++ AWD    G   +E++     +S+ +    +D  +G    + 
Sbjct: 1996 NNGGNNWNTTKSAGGGQSSAWDKSSSG---NEEAVAAEISSKAK----EDEGSGRQGSSW 2048

Query: 1323 ERSSLG 1306
            E+++ G
Sbjct: 2049 EKAAAG 2054


>ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Elaeis
            guineensis]
          Length = 2069

 Score =  158 bits (399), Expect = 7e-36
 Identities = 174/710 (24%), Positives = 274/710 (38%), Gaps = 55/710 (7%)
 Frame = -3

Query: 2292 GTWSN--NHDQGQTATW---ERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGD 2128
            G W+   + D G ++ W      W++++   +   +  NWN + +    +++S  GG  +
Sbjct: 1295 GGWNGRKSFDAGCSSGWGGQSSDWKKDEAANNCSPNSLNWNKEASL---KEAS--GGGDN 1349

Query: 2127 HRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
              +    G +      KW S              G++G      +N  R  DK     Q 
Sbjct: 1350 WNMSNLSGGNQSSGWDKWSSGNEQV---------GKAGAGSAKGWNSSRPSDK----KQY 1396

Query: 1947 SNWTDKQTSGT--------GGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVD 1792
              W DK  +G         GG   + D      ++ G R  +WN+          +K  D
Sbjct: 1397 CGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAY-GARDDAWNS----------SKAAD 1445

Query: 1791 GGSNWEKEARTPKDSNSDWERLQTCKNS-EWNNDGERGTESSGWQQSSFKDTSREKTVDG 1615
               NW K A    +  +   +    + + +   DG+   ++ GW ++SFK +      + 
Sbjct: 1446 ---NWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFKSSPGIDGCEK 1502

Query: 1614 GWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDN 1435
              + P +D             SW            VS +  S+W   + +S+++A+ WD 
Sbjct: 1503 AKELPSMDAGG----------SWDKAESNKDKGKGVSWDNPSSWACPEVVSNDKANVWDI 1552

Query: 1434 KGKGTIA-DEDSWGKANNSQERKFDVDDNWAGNSNQN-EERSSLGCGNQSSCWDAATK-- 1267
            KGKG +  +ED WGK++ SQE K +  D W  NS+QN EE      G++++ WDAA    
Sbjct: 1553 KGKGVVRNEEDVWGKSSKSQENKNESKD-WGSNSSQNREEDYKFIGGSKANNWDAAASHW 1611

Query: 1266 ---SLH--QVDEWGTAKDSFAGKSDQW-KGISEMDTEPGAWNQTQFSNQSGNNNWNRPKS 1105
               + H  Q   W  A D  +G+SD W K   + + E G W++T FS+Q  N  W++ KS
Sbjct: 1612 TQSAAHGGQSTSWDKANDPHSGQSDNWGKAREKNEAEAGGWSKTGFSSQIQNARWDQTKS 1671

Query: 1104 FGEE--------ADNRDG--------WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
            FG +         DN D         WNK                               
Sbjct: 1672 FGGDNASNWSKGIDNEDAFRNGRSDNWNKPRNFEGGRGFGRGRGGGRNAGGSGNRDQDGN 1731

Query: 972  XXRPMD--GARRCSWGSGRGRNDETGGDR--QSKWNSQXXXXXXXXXXXXXXXXXXRE-- 811
              +PM+  G  R  WG GR  N+E GG R   S WN Q                      
Sbjct: 1732 WNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSGARG 1791

Query: 810  -RNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPGRGNFSLVDSRDN 634
             R Q D                   G N G   D    S+   S+G GRG     + ++ 
Sbjct: 1792 GRGQGDKWNGPEKERGLGSSRGGGWGRN-GETGDERNESDGRQSYGRGRGWIRSSNGKEE 1850

Query: 633  RDNWANE--EKKGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHS-VADKWSTGTGDV 463
            ++N+ +    K    +W+ND++            WG+  D G S H+  +  WST + D 
Sbjct: 1851 QENFGDGTFPKASTFNWANDQS----------LGWGKL-DKGKSFHAGGSSSWSTQSADW 1899

Query: 462  SK--AAETWSNIEFAQAAGDQGYSWDKAA---GSWNPNNETNGSKGGW*K 328
            SK  A+  W++     ++ + G S  KAA   G+WN  +       GW K
Sbjct: 1900 SKDGASNKWNS---PDSSWNPGASVKKAAGGGGNWNATDPGRSHSSGWDK 1946



 Score =  118 bits (296), Expect = 2e-23
 Identities = 147/672 (21%), Positives = 219/672 (32%), Gaps = 124/672 (18%)
 Frame = -3

Query: 2016 GGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            G    D  N     D+GH A     W  K  SG      + D    +K+ DG   ++ ++
Sbjct: 668  GSNSSDVDNNDHKSDEGHDADP---WGSKVLSGA-----RADAWHSSKAMDGWGKAAGSS 719

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGER----GTESS 1669
              Q++           G     +AR   +    W      K S   ++ ++     +++ 
Sbjct: 720  GEQDSQWNMTA----AGDKVTDQARNCIEDADGWNGKALAKTSTEIDESKKPKPQSSDAG 775

Query: 1668 GWQQSSF---KDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLN 1498
            GW +  F    +    + V G WDK R D+  +  K +     W            +S +
Sbjct: 776  GWGRGDFGSGNNLDPTENVSGNWDKQRDDDLGDSRKNSDGVSGWDRAATSKDKGKDLSWD 835

Query: 1497 KSSNWTDSQTISSNEADAWDNKGKGTIADED-SWGKANNSQERKFDVD------------ 1357
            +S+NWT  + +S ++A  WD KGKG I++ED SWGKA   +E+  + D            
Sbjct: 836  QSNNWTHPEVVSIDKASCWDVKGKGIISNEDDSWGKAARFREKNTNEDWGKFSVGSSQIK 895

Query: 1356 -------------DNWAGNSNQNEERSSLGCGNQSSCWDAATKSLH-------------- 1258
                         D W   ++ N  +SS+  G QS  WD A + LH              
Sbjct: 896  EKDTARSDGGEQADRWDAAAS-NCTQSSVQHGGQSRSWDKA-RDLHVGRLDNWGKSEDKS 953

Query: 1257 ----------------------------------QVDEWGTAKDSFAGKSDQWKGISEMD 1180
                                              Q   W  AKD   G+SD W  ++E  
Sbjct: 954  KAETRDQNKSGFSNQTQNARWEEPKSFGGDKPGGQTSSWDKAKDPHGGQSDNWGEVNETS 1013

Query: 1179 -TEPGAWNQTQFSNQS--------GNNNWNRPKSFGEE-----------ADNRDGWNKAX 1060
              EPG W++  FS+Q          N  W+   SFG +           +D  D W K  
Sbjct: 1014 RAEPGGWSKAGFSSQGENVRRDEPQNARWDGSTSFGRDNASNCGKVVDGSDQMDNWKKPR 1073

Query: 1059 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGD--RQS 886
                                              DG+++ SWG G  RN+E GGD  +++
Sbjct: 1074 NFEGGHGFGQGRGRGWNAGESGKRDRDGSWN--SDGSQKSSWGKGWDRNNEAGGDGGQEN 1131

Query: 885  KWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGA 706
             WN Q                                                    DG 
Sbjct: 1132 NWNQQTGS-------------------------------------------------DGG 1142

Query: 705  RTSNDSGSWGPGRGNFSLVDSRDNRDNWANE-EKKGWSSWSNDEAGKASNNDQEENNW-- 535
            R S     WG GRG +     R   DNW+    + GW S      G+      E++NW  
Sbjct: 1143 RGSR----WGGGRGRYG-ARGRGEDDNWSGPGARGGWGSARGGGRGRNGGGRGEDDNWSG 1197

Query: 534  -------------GRTKDPGSSSHSVAD-KWSTGTGDVSKAAETWSNIEFAQAAGDQGYS 397
                         GR ++ G  + S  D   S G G        W  ++ +    DQ + 
Sbjct: 1198 PGARGGWGSARGGGRGRNGGGDNASSFDGTRSFGRGRGRGRGCGW--VQSSNLKDDQEHC 1255

Query: 396  WD----KAAGSW 373
            WD    K   SW
Sbjct: 1256 WDGTFQKTPSSW 1267



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 105/447 (23%), Positives = 155/447 (34%), Gaps = 36/447 (8%)
 Frame = -3

Query: 2295 DGTWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRVG 2116
            DG+W  N D  Q ++W +GW RN++    G  ENNWN Q   DG R S W GGRG +   
Sbjct: 1100 DGSW--NSDGSQKSSWGKGWDRNNEAGGDGGQENNWNQQTGSDGGRGSRWGGGRGRYGAR 1157

Query: 2115 GSVGLDDG----DEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQT 1948
            G  G DD        G W S              G++GG R +  N      +G   +  
Sbjct: 1158 GR-GEDDNWSGPGARGGWGSARGGGR--------GRNGGGRGEDDNWSGPGARGGWGSAR 1208

Query: 1947 SNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSW---NNLPQETDTRTDTKFVDGGSNW 1777
                 +   G     + D  RS  +     R   W   +NL  + +   D  F    S+W
Sbjct: 1209 GGGRGRNGGGDNA-SSFDGTRSFGRGRGRGRGCGWVQSSNLKDDQEHCWDGTFQKTPSSW 1267

Query: 1776 EKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPR 1597
              + +TP      W + +   +SE     E   +  GW      D         GW    
Sbjct: 1268 -ADKKTP-----GWGKSK--GSSEIEESAENIDQQGGWNGRKSFDAG----CSSGWGGQS 1315

Query: 1596 VDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWD------- 1438
             D  ++    AA  CS            + +     NW  S     N++  WD       
Sbjct: 1316 SDWKKD---EAANNCSPNSLNWNKEASLKEASGGGDNWNMSNLSGGNQSSGWDKWSSGNE 1372

Query: 1437 NKGKGTIADEDSWGKANNSQERKFD--VDDNWAGNSNQ------NEERSSLGCGNQSS-- 1288
              GK        W  +  S ++++   VD   AGN          +E  +  CG++ +  
Sbjct: 1373 QVGKAGAGSAKGWNSSRPSDKKQYCGWVDKTLAGNEEACQKTVGGQEYEADPCGSKVAYG 1432

Query: 1287 CWDAATKSLHQVDEWGTAKD------------SFAGKSDQWKGISEMDTEPGAWNQTQFS 1144
              D A  S    D WG A D            +   K+       +   +   WN+T F 
Sbjct: 1433 ARDDAWNSSKAADNWGKAADLHMEQITPLRKATVGEKAIDEGRDGDCSKDTDGWNRTSFK 1492

Query: 1143 NQSGNNNWNRPKSFGEEADNRDGWNKA 1063
            +  G +   + K      D    W+KA
Sbjct: 1493 SSPGIDGCEKAKEL-PSMDAGGSWDKA 1518



 Score = 69.3 bits (168), Expect = 3e-08
 Identities = 78/366 (21%), Positives = 130/366 (35%), Gaps = 36/366 (9%)
 Frame = -3

Query: 2295 DGTWSN--NHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHR 2122
            DG W+     + G  + W RG   N++       ++NWN Q++F G   SSW  G G   
Sbjct: 1729 DGNWNKPMEREGGPRSGWGRGRDGNNEAGGGRGQDSNWNRQRDFGGGTGSSWERGSGHSG 1788

Query: 2121 VGGSVGLDD---GDEEGKWISXXXXXXXXXXXACYGQSGGTRDD--------SFNQIRNW 1975
              G  G  D   G E+ + +              +G++G T D+        S+ + R W
Sbjct: 1789 ARGGRGQGDKWNGPEKERGLGSSRGGG-------WGRNGETGDERNESDGRQSYGRGRGW 1841

Query: 1974 --------------DKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
                          D       T NW + Q+ G G          K KSF     SSW+ 
Sbjct: 1842 IRSSNGKEEQENFGDGTFPKASTFNWANDQSLGWGK-------LDKGKSFHAGGSSSWST 1894

Query: 1836 LPQETDTRTD---TKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSG 1666
              Q  D   D    K+    S+W   A   K +              WN      + SSG
Sbjct: 1895 --QSADWSKDGASNKWNSPDSSWNPGASVKKAAGG---------GGNWNATDPGRSHSSG 1943

Query: 1665 WQQSSFKDTSREK---TVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSL-- 1501
            W + S  +    K     +GGW+  +             +  W           + ++  
Sbjct: 1944 WDKCSSGNEQAGKAGVAAEGGWNSSKP-------SGKEHSFGWDDKILAGDEAGKKTVGG 1996

Query: 1500 -NKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNE 1324
             N  +NW  +++    ++ AWD    G   +E++     +S+ +    +D  +G    + 
Sbjct: 1997 NNGGNNWNTTKSAGGGQSSAWDKSSSG---NEEAVAAEISSKAK----EDEGSGRQGSSW 2049

Query: 1323 ERSSLG 1306
            E+++ G
Sbjct: 2050 EKAAAG 2055


>ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isoform X2 [Ananas comosus]
          Length = 1714

 Score =  141 bits (355), Expect = 2e-30
 Identities = 171/750 (22%), Positives = 267/750 (35%), Gaps = 86/750 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 1024 DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 1076

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 1077 SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 1136

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 1137 NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 1196

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 1197 LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASVP 1255

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVD--EPRNILKAAAETCSWXXXXXXX 1525
            +SGW  S S +D        KT    D G  +   D    +   KA  ++          
Sbjct: 1256 TSGWNSSNSLQDKQSSGFSGKTFAAEDAGGQECEADPWASKVTSKAGNDSFDAGWNKAST 1315

Query: 1524 XXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVDD 1354
                   L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     + 
Sbjct: 1316 KSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTET 1374

Query: 1353 NWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGISE 1186
            N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S 
Sbjct: 1375 NVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCSS 1432

Query: 1185 MD-TEPGAWNQTQFSN----------------------QSGNNNWNRPKSFGEEADNRDG 1075
             D      W++ + S                       +S +N+WN+P   G   D+R  
Sbjct: 1433 FDGGNESTWDKPRNSEGRGFGGFGGGRGRGRYSGEGGYRSRDNDWNKPADRGN--DHRSS 1490

Query: 1074 WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGR-NDETGG 898
            WN+                                 R  D  R  S   GRGR     G 
Sbjct: 1491 WNR---------------------DENNGSSNWNQRRDSDSGRGTSGERGRGRYGANRGR 1529

Query: 897  DRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNK 718
            ++ + W                       RNQ DNS                 GS++G K
Sbjct: 1530 NQDNSWRG--------------------GRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG-K 1567

Query: 717  FDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEKK 604
             D   +S+  G                +WG    N+   D+    +N    W N  EEK 
Sbjct: 1568 SDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK- 1626

Query: 603  GWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEFA 424
              +SW+   A    ++  E+N+ G  +  G  S           G +S         E  
Sbjct: 1627 --NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEAE 1684

Query: 423  QAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                DQG  WDKAAG+W      + SKGGW
Sbjct: 1685 GGGADQGSCWDKAAGAWGGAKGGSSSKGGW 1714



 Score =  112 bits (281), Expect = 1e-21
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 686  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 743

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 744  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKISNLDNSKTGGDNAWD 799

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 800  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 845

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 846  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 905

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 906  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 957

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 958  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 1015

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 1016 KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 1065

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 1066 RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 1125

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 1126 GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 1175

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 1176 DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 1232

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 1233 NASKSSSWDK 1242


>ref|XP_020091607.1| protein RNA-directed DNA methylation 3 isoform X5 [Ananas comosus]
          Length = 1429

 Score =  140 bits (352), Expect = 3e-30
 Identities = 171/751 (22%), Positives = 268/751 (35%), Gaps = 87/751 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 738  DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 790

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 791  SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 850

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 851  NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 910

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 911  LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASVP 969

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVDEP---RNILKAAAETCSWXXXXXX 1528
            +SGW  S S +D        KT    D G  +    +P   +   KA  ++         
Sbjct: 970  TSGWNSSNSLQDKQSSGFSGKTFAAEDAGAGQECEADPWASKVTSKAGNDSFDAGWNKAS 1029

Query: 1527 XXXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVD 1357
                    L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     +
Sbjct: 1030 TKSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTE 1088

Query: 1356 DNWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGIS 1189
             N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S
Sbjct: 1089 TNVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCS 1146

Query: 1188 EMD-TEPGAWNQTQFSN----------------------QSGNNNWNRPKSFGEEADNRD 1078
              D      W++ + S                       +S +N+WN+P   G   D+R 
Sbjct: 1147 SFDGGNESTWDKPRNSEGRGFGGFGGGRGRGRYSGEGGYRSRDNDWNKPADRGN--DHRS 1204

Query: 1077 GWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGR-NDETG 901
             WN+                                 R  D  R  S   GRGR     G
Sbjct: 1205 SWNR---------------------DENNGSSNWNQRRDSDSGRGTSGERGRGRYGANRG 1243

Query: 900  GDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGN 721
             ++ + W                       RNQ DNS                 GS++G 
Sbjct: 1244 RNQDNSWRG--------------------GRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG- 1281

Query: 720  KFDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEK 607
            K D   +S+  G                +WG    N+   D+    +N    W N  EEK
Sbjct: 1282 KSDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK 1341

Query: 606  KGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEF 427
               +SW+   A    ++  E+N+ G  +  G  S           G +S         E 
Sbjct: 1342 ---NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEA 1398

Query: 426  AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                 DQG  WDKAAG+W      + SKGGW
Sbjct: 1399 EGGGADQGSCWDKAAGAWGGAKGGSSSKGGW 1429



 Score =  112 bits (281), Expect = 1e-21
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 400  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 457

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 458  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKISNLDNSKTGGDNAWD 513

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 514  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 559

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 560  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 619

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 620  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 671

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 672  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 729

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 730  KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 779

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 780  RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 839

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 840  GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 889

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 890  DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 946

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 947  NASKSSSWDK 956



 Score = 74.7 bits (182), Expect = 7e-10
 Identities = 143/701 (20%), Positives = 240/701 (34%), Gaps = 152/701 (21%)
 Frame = -3

Query: 1980 NWDKG---HCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN------NLPQ 1828
            +WDK       T++ NW     S      N +D   K KSF G  +S+WN      +   
Sbjct: 680  SWDKAAKEKTETESGNWNKAGVSNQ----NPNDNWYKPKSFGGDSMSNWNKGEDKADRDN 735

Query: 1827 ETDTRTDTKFVDGG--------SNWEKE--------ARTPKDSNSDWER---LQTCKNSE 1705
            +TD+    K  DGG          W K         A   K    +W R       K S 
Sbjct: 736  QTDSWNKPKSFDGGDWAKSDKQGGWNKPSGNYGNNGAGGEKHEERNWNRKGDFDGSKGSS 795

Query: 1704 WNNDGERGTESSGWQQSSFKDTSREKTVD-----------GGWDKPR----VDEPRNILK 1570
            WN  G  G    G   + F D SR+ +VD           GG+ + R      + RN  +
Sbjct: 796  WNRGGRYGGRGRGCDNNEFGD-SRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCRNERQ 854

Query: 1569 AAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSN---EADAWDNKGKGTIADEDSW 1399
            ++ E  ++               +KSS++  ++  + N   + DA +  GK       SW
Sbjct: 855  SSGEG-TYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGK-------SW 906

Query: 1398 GKANNSQERKFDVDDNWAGNSNQ----NEERSSLGCG-----NQSSCWDAATKSLHQVDE 1246
            G  + S+ +K D D NW  + ++      +RS  G G     ++SS WD  +      D 
Sbjct: 907  GAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKWNASKSSSWDKFSSENKSADA 966

Query: 1245 ------WGTA-------KDSFAGKS----DQWKGISEMDTEPGAWNQTQFSNQSGNNNWN 1117
                  W ++          F+GK+    D   G  E + +P A   ++ ++++GN++++
Sbjct: 967  SVPTSGWNSSNSLQDKQSSGFSGKTFAAEDAGAG-QECEADPWA---SKVTSKAGNDSFD 1022

Query: 1116 RPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCS 937
                         GWNKA                                 P    +  +
Sbjct: 1023 A------------GWNKA-------------STKSGTNFDLLEKTKHASSDPAANDKSDA 1057

Query: 936  WGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXX 757
            W + +GR    G + +  W                       + Q D SL          
Sbjct: 1058 W-NAKGRKSTLGSEEEDAWGKASKPQENITTETNVGNSSTWNKEQ-DTSLNSGSKWESAA 1115

Query: 756  XXXXXXGSNYGN-------------------KFDGARTS------NDSG------SWGPG 670
                   S + N                    FDG   S      N  G        G G
Sbjct: 1116 SQRSQSESQWNNWEKTKDKGATPTDSWSKCSSFDGGNESTWDKPRNSEGRGFGGFGGGRG 1175

Query: 669  RGNFS---LVDSRDN------------RDNWANEEKKGWSSWS---NDEAGKASNNDQ-- 550
            RG +S      SRDN            R +W  +E  G S+W+   + ++G+ ++ ++  
Sbjct: 1176 RGRYSGEGGYRSRDNDWNKPADRGNDHRSSWNRDENNGSSNWNQRRDSDSGRGTSGERGR 1235

Query: 549  ----------EENNW--GRTKDPG-----------SSSHSVADKWSTGTGDVSKAAETWS 439
                      ++N+W  GR +D             +S +S    W  G  D   +++   
Sbjct: 1236 GRYGANRGRNQDNSWRGGRNQDNSWRGGRGNFGDRTSQNSQGSSW--GKSDAVNSSDQQG 1293

Query: 438  NIEFAQ---AAGDQGYSWDKAAGSWNPNN---ETNGSKGGW 334
            N ++++   AAG+   +W K + +W  ++   + N +   W
Sbjct: 1294 NNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSW 1334


>ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isoform X3 [Ananas comosus]
          Length = 1714

 Score =  140 bits (352), Expect = 4e-30
 Identities = 171/751 (22%), Positives = 268/751 (35%), Gaps = 87/751 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 1023 DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 1075

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 1076 SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 1135

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 1136 NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 1195

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 1196 LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASVP 1254

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVDEP---RNILKAAAETCSWXXXXXX 1528
            +SGW  S S +D        KT    D G  +    +P   +   KA  ++         
Sbjct: 1255 TSGWNSSNSLQDKQSSGFSGKTFAAEDAGAGQECEADPWASKVTSKAGNDSFDAGWNKAS 1314

Query: 1527 XXXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVD 1357
                    L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     +
Sbjct: 1315 TKSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTE 1373

Query: 1356 DNWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGIS 1189
             N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S
Sbjct: 1374 TNVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCS 1431

Query: 1188 EMD-TEPGAWNQTQFSN----------------------QSGNNNWNRPKSFGEEADNRD 1078
              D      W++ + S                       +S +N+WN+P   G   D+R 
Sbjct: 1432 SFDGGNESTWDKPRNSEGRGFGGFGGGRGRGRYSGEGGYRSRDNDWNKPADRGN--DHRS 1489

Query: 1077 GWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGR-NDETG 901
             WN+                                 R  D  R  S   GRGR     G
Sbjct: 1490 SWNR---------------------DENNGSSNWNQRRDSDSGRGTSGERGRGRYGANRG 1528

Query: 900  GDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGN 721
             ++ + W                       RNQ DNS                 GS++G 
Sbjct: 1529 RNQDNSWRG--------------------GRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG- 1566

Query: 720  KFDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEK 607
            K D   +S+  G                +WG    N+   D+    +N    W N  EEK
Sbjct: 1567 KSDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK 1626

Query: 606  KGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEF 427
               +SW+   A    ++  E+N+ G  +  G  S           G +S         E 
Sbjct: 1627 ---NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEA 1683

Query: 426  AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                 DQG  WDKAAG+W      + SKGGW
Sbjct: 1684 EGGGADQGSCWDKAAGAWGGAKGGSSSKGGW 1714



 Score =  112 bits (281), Expect = 1e-21
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 685  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 742

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 743  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKISNLDNSKTGGDNAWD 798

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 799  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 844

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 845  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 904

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 905  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 956

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 957  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 1014

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 1015 KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 1064

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 1065 RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 1124

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 1125 GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 1174

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 1175 DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 1231

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 1232 NASKSSSWDK 1241



 Score = 74.7 bits (182), Expect = 7e-10
 Identities = 143/701 (20%), Positives = 240/701 (34%), Gaps = 152/701 (21%)
 Frame = -3

Query: 1980 NWDKG---HCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN------NLPQ 1828
            +WDK       T++ NW     S      N +D   K KSF G  +S+WN      +   
Sbjct: 965  SWDKAAKEKTETESGNWNKAGVSNQ----NPNDNWYKPKSFGGDSMSNWNKGEDKADRDN 1020

Query: 1827 ETDTRTDTKFVDGG--------SNWEKE--------ARTPKDSNSDWER---LQTCKNSE 1705
            +TD+    K  DGG          W K         A   K    +W R       K S 
Sbjct: 1021 QTDSWNKPKSFDGGDWAKSDKQGGWNKPSGNYGNNGAGGEKHEERNWNRKGDFDGSKGSS 1080

Query: 1704 WNNDGERGTESSGWQQSSFKDTSREKTVD-----------GGWDKPR----VDEPRNILK 1570
            WN  G  G    G   + F D SR+ +VD           GG+ + R      + RN  +
Sbjct: 1081 WNRGGRYGGRGRGCDNNEFGD-SRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCRNERQ 1139

Query: 1569 AAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSN---EADAWDNKGKGTIADEDSW 1399
            ++ E  ++               +KSS++  ++  + N   + DA +  GK       SW
Sbjct: 1140 SSGEG-TYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGK-------SW 1191

Query: 1398 GKANNSQERKFDVDDNWAGNSNQ----NEERSSLGCG-----NQSSCWDAATKSLHQVDE 1246
            G  + S+ +K D D NW  + ++      +RS  G G     ++SS WD  +      D 
Sbjct: 1192 GAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKWNASKSSSWDKFSSENKSADA 1251

Query: 1245 ------WGTA-------KDSFAGKS----DQWKGISEMDTEPGAWNQTQFSNQSGNNNWN 1117
                  W ++          F+GK+    D   G  E + +P A   ++ ++++GN++++
Sbjct: 1252 SVPTSGWNSSNSLQDKQSSGFSGKTFAAEDAGAG-QECEADPWA---SKVTSKAGNDSFD 1307

Query: 1116 RPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCS 937
                         GWNKA                                 P    +  +
Sbjct: 1308 A------------GWNKA-------------STKSGTNFDLLEKTKHASSDPAANDKSDA 1342

Query: 936  WGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXX 757
            W + +GR    G + +  W                       + Q D SL          
Sbjct: 1343 W-NAKGRKSTLGSEEEDAWGKASKPQENITTETNVGNSSTWNKEQ-DTSLNSGSKWESAA 1400

Query: 756  XXXXXXGSNYGN-------------------KFDGARTS------NDSG------SWGPG 670
                   S + N                    FDG   S      N  G        G G
Sbjct: 1401 SQRSQSESQWNNWEKTKDKGATPTDSWSKCSSFDGGNESTWDKPRNSEGRGFGGFGGGRG 1460

Query: 669  RGNFS---LVDSRDN------------RDNWANEEKKGWSSWS---NDEAGKASNNDQ-- 550
            RG +S      SRDN            R +W  +E  G S+W+   + ++G+ ++ ++  
Sbjct: 1461 RGRYSGEGGYRSRDNDWNKPADRGNDHRSSWNRDENNGSSNWNQRRDSDSGRGTSGERGR 1520

Query: 549  ----------EENNW--GRTKDPG-----------SSSHSVADKWSTGTGDVSKAAETWS 439
                      ++N+W  GR +D             +S +S    W  G  D   +++   
Sbjct: 1521 GRYGANRGRNQDNSWRGGRNQDNSWRGGRGNFGDRTSQNSQGSSW--GKSDAVNSSDQQG 1578

Query: 438  NIEFAQ---AAGDQGYSWDKAAGSWNPNN---ETNGSKGGW 334
            N ++++   AAG+   +W K + +W  ++   + N +   W
Sbjct: 1579 NNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSW 1619


>ref|XP_020091602.1| protein RNA-directed DNA methylation 3 isoform X1 [Ananas comosus]
          Length = 1715

 Score =  140 bits (352), Expect = 4e-30
 Identities = 171/751 (22%), Positives = 268/751 (35%), Gaps = 87/751 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 1024 DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 1076

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 1077 SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 1136

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 1137 NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 1196

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 1197 LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASVP 1255

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVDEP---RNILKAAAETCSWXXXXXX 1528
            +SGW  S S +D        KT    D G  +    +P   +   KA  ++         
Sbjct: 1256 TSGWNSSNSLQDKQSSGFSGKTFAAEDAGAGQECEADPWASKVTSKAGNDSFDAGWNKAS 1315

Query: 1527 XXXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVD 1357
                    L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     +
Sbjct: 1316 TKSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTE 1374

Query: 1356 DNWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGIS 1189
             N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S
Sbjct: 1375 TNVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCS 1432

Query: 1188 EMD-TEPGAWNQTQFSN----------------------QSGNNNWNRPKSFGEEADNRD 1078
              D      W++ + S                       +S +N+WN+P   G   D+R 
Sbjct: 1433 SFDGGNESTWDKPRNSEGRGFGGFGGGRGRGRYSGEGGYRSRDNDWNKPADRGN--DHRS 1490

Query: 1077 GWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGR-NDETG 901
             WN+                                 R  D  R  S   GRGR     G
Sbjct: 1491 SWNR---------------------DENNGSSNWNQRRDSDSGRGTSGERGRGRYGANRG 1529

Query: 900  GDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGN 721
             ++ + W                       RNQ DNS                 GS++G 
Sbjct: 1530 RNQDNSWRG--------------------GRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG- 1567

Query: 720  KFDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEK 607
            K D   +S+  G                +WG    N+   D+    +N    W N  EEK
Sbjct: 1568 KSDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK 1627

Query: 606  KGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEF 427
               +SW+   A    ++  E+N+ G  +  G  S           G +S         E 
Sbjct: 1628 ---NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEA 1684

Query: 426  AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                 DQG  WDKAAG+W      + SKGGW
Sbjct: 1685 EGGGADQGSCWDKAAGAWGGAKGGSSSKGGW 1715



 Score =  112 bits (281), Expect = 1e-21
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 686  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 743

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 744  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKISNLDNSKTGGDNAWD 799

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 800  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 845

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 846  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 905

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 906  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 957

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 958  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 1015

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 1016 KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 1065

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 1066 RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 1125

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 1126 GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 1175

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 1176 DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 1232

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 1233 NASKSSSWDK 1242



 Score = 74.7 bits (182), Expect = 7e-10
 Identities = 143/701 (20%), Positives = 240/701 (34%), Gaps = 152/701 (21%)
 Frame = -3

Query: 1980 NWDKG---HCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN------NLPQ 1828
            +WDK       T++ NW     S      N +D   K KSF G  +S+WN      +   
Sbjct: 966  SWDKAAKEKTETESGNWNKAGVSNQ----NPNDNWYKPKSFGGDSMSNWNKGEDKADRDN 1021

Query: 1827 ETDTRTDTKFVDGG--------SNWEKE--------ARTPKDSNSDWER---LQTCKNSE 1705
            +TD+    K  DGG          W K         A   K    +W R       K S 
Sbjct: 1022 QTDSWNKPKSFDGGDWAKSDKQGGWNKPSGNYGNNGAGGEKHEERNWNRKGDFDGSKGSS 1081

Query: 1704 WNNDGERGTESSGWQQSSFKDTSREKTVD-----------GGWDKPR----VDEPRNILK 1570
            WN  G  G    G   + F D SR+ +VD           GG+ + R      + RN  +
Sbjct: 1082 WNRGGRYGGRGRGCDNNEFGD-SRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCRNERQ 1140

Query: 1569 AAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSN---EADAWDNKGKGTIADEDSW 1399
            ++ E  ++               +KSS++  ++  + N   + DA +  GK       SW
Sbjct: 1141 SSGEG-TYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGK-------SW 1192

Query: 1398 GKANNSQERKFDVDDNWAGNSNQ----NEERSSLGCG-----NQSSCWDAATKSLHQVDE 1246
            G  + S+ +K D D NW  + ++      +RS  G G     ++SS WD  +      D 
Sbjct: 1193 GAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKWNASKSSSWDKFSSENKSADA 1252

Query: 1245 ------WGTA-------KDSFAGKS----DQWKGISEMDTEPGAWNQTQFSNQSGNNNWN 1117
                  W ++          F+GK+    D   G  E + +P A   ++ ++++GN++++
Sbjct: 1253 SVPTSGWNSSNSLQDKQSSGFSGKTFAAEDAGAG-QECEADPWA---SKVTSKAGNDSFD 1308

Query: 1116 RPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCS 937
                         GWNKA                                 P    +  +
Sbjct: 1309 A------------GWNKA-------------STKSGTNFDLLEKTKHASSDPAANDKSDA 1343

Query: 936  WGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXX 757
            W + +GR    G + +  W                       + Q D SL          
Sbjct: 1344 W-NAKGRKSTLGSEEEDAWGKASKPQENITTETNVGNSSTWNKEQ-DTSLNSGSKWESAA 1401

Query: 756  XXXXXXGSNYGN-------------------KFDGARTS------NDSG------SWGPG 670
                   S + N                    FDG   S      N  G        G G
Sbjct: 1402 SQRSQSESQWNNWEKTKDKGATPTDSWSKCSSFDGGNESTWDKPRNSEGRGFGGFGGGRG 1461

Query: 669  RGNFS---LVDSRDN------------RDNWANEEKKGWSSWS---NDEAGKASNNDQ-- 550
            RG +S      SRDN            R +W  +E  G S+W+   + ++G+ ++ ++  
Sbjct: 1462 RGRYSGEGGYRSRDNDWNKPADRGNDHRSSWNRDENNGSSNWNQRRDSDSGRGTSGERGR 1521

Query: 549  ----------EENNW--GRTKDPG-----------SSSHSVADKWSTGTGDVSKAAETWS 439
                      ++N+W  GR +D             +S +S    W  G  D   +++   
Sbjct: 1522 GRYGANRGRNQDNSWRGGRNQDNSWRGGRGNFGDRTSQNSQGSSW--GKSDAVNSSDQQG 1579

Query: 438  NIEFAQ---AAGDQGYSWDKAAGSWNPNN---ETNGSKGGW 334
            N ++++   AAG+   +W K + +W  ++   + N +   W
Sbjct: 1580 NNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSW 1620


>gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas comosus]
          Length = 1701

 Score =  136 bits (343), Expect = 4e-29
 Identities = 170/750 (22%), Positives = 266/750 (35%), Gaps = 86/750 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 1020 DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 1072

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 1073 SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 1132

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 1133 NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 1192

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 1193 LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASLP 1251

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVD--EPRNILKAAAETCSWXXXXXXX 1525
            +SGW  S S +D        KT    D G  +   D    +   KA  ++          
Sbjct: 1252 TSGWNSSNSLQDKQSSGFSGKTFAAEDAGGQECEADPWASKVTSKAGNDSFDAGWNKAST 1311

Query: 1524 XXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVDD 1354
                   L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     + 
Sbjct: 1312 KSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTET 1370

Query: 1353 NWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGISE 1186
            N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S 
Sbjct: 1371 NVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCSS 1428

Query: 1185 MD-TEPGAWNQTQFSNQ-----------------------SGNNNWNRPKSFGEEADNRD 1078
             D      W++ + S +                       S +N+WN+P   G   D R 
Sbjct: 1429 FDGGNESTWDKPRNSEEGRGFGGFGRGRGRGRYSGEGGYRSRDNDWNKPADRGN--DYRS 1486

Query: 1077 GWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGG 898
             WN+                                    +  +R    SGRG + E G 
Sbjct: 1487 SWNR-----------------------------DENNGSSNWNQRRDSDSGRGTSGERGR 1517

Query: 897  DRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNK 718
             R                         R RNQ DNS                 GS++G K
Sbjct: 1518 GRYG---------------------ANRGRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG-K 1554

Query: 717  FDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEKK 604
             D   +S+  G                +WG    N+   D+    +N    W N  EEK 
Sbjct: 1555 SDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK- 1613

Query: 603  GWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEFA 424
              +SW+   A    ++  E+N+ G  +  G  S           G +S         E  
Sbjct: 1614 --NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEAE 1671

Query: 423  QAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
              + DQG  WDKAAG+W      + SKGGW
Sbjct: 1672 GGSADQGSCWDKAAGAWGGAKGGSSSKGGW 1701



 Score =  113 bits (283), Expect = 7e-22
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 682  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 739

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 740  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKTSNLDNSKTGGDNAWD 795

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 796  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 841

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 842  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 901

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 902  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 953

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 954  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 1011

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 1012 KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 1061

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 1062 RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 1121

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 1122 GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 1171

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 1172 DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 1228

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 1229 NASKSSSWDK 1238


>ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isoform X4 [Ananas comosus]
          Length = 1705

 Score =  136 bits (343), Expect = 4e-29
 Identities = 170/750 (22%), Positives = 267/750 (35%), Gaps = 86/750 (11%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGTWSNNHDQGQTATWERGWQR------NDDGRDPGHHENNWNGQKNFDG 2164
            ++WNK   F  G W+ +  QG       GW +      N+      H E NWN + +FDG
Sbjct: 1024 DSWNKPKSFDGGDWAKSDKQG-------GWNKPSGNYGNNGAGGEKHEERNWNRKGDFDG 1076

Query: 2163 ERQSSW-VGGRGDHRVGGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRD--DSF 1993
             + SSW  GGR   R  G    + GD     +              +G+  G  D  D  
Sbjct: 1077 SKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCR 1136

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSG--------TGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
            N+ ++  +G  +   S+W   Q +G            P  + I+ K+ + +  +     +
Sbjct: 1137 NERQSSGEGTYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGKSWGAKS 1196

Query: 1836 LPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEW------NNDGERGTE 1675
            L +     TDT +    S W    ++ +  +   ++    K+S W      N   +    
Sbjct: 1197 LSEPKKDDTDTNWTSSDSKWNL-GQSKRSEDGGGDKWNASKSSSWDKFSSENKSADASVP 1255

Query: 1674 SSGWQQS-SFKDTSRE----KTV---DGGWDKPRVDEP---RNILKAAAETCSWXXXXXX 1528
            +SGW  S S +D        KT    D G  +    +P   +   KA  ++         
Sbjct: 1256 TSGWNSSNSLQDKQSSGFSGKTFAAEDAGAGQECEADPWASKVTSKAGNDSFDAGWNKAS 1315

Query: 1527 XXXXXRVSLNKSSNWTDSQTISSNEADAWDNKG-KGTIA--DEDSWGKANNSQERKFDVD 1357
                    L + +    S   +++++DAW+ KG K T+   +ED+WGKA+  QE     +
Sbjct: 1316 TKSGTNFDLLEKTKHASSDPAANDKSDAWNAKGRKSTLGSEEEDAWGKASKPQE-NITTE 1374

Query: 1356 DNWAGNSNQNEERSSLGCGNQSSCWDAA----TKSLHQVDEWGTAKDSFAGKSDQWKGIS 1189
             N   +S  N+E+ +    N  S W++A    ++S  Q + W   KD  A  +D W   S
Sbjct: 1375 TNVGNSSTWNKEQDT--SLNSGSKWESAASQRSQSESQWNNWEKTKDKGATPTDSWSKCS 1432

Query: 1188 EMD-TEPGAWNQTQFSN----------------------QSGNNNWNRPKSFGEEADNRD 1078
              D      W++ + S                       +S +N+WN+P   G   D+R 
Sbjct: 1433 SFDGGNESTWDKPRNSEGRGFGGFGGGRGRGRYSGEGGYRSRDNDWNKPADRGN--DHRS 1490

Query: 1077 GWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGG 898
             WN+                                    +  +R    SGRG + E G 
Sbjct: 1491 SWNR-----------------------------DENNGSSNWNQRRDSDSGRGTSGERGR 1521

Query: 897  DRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNK 718
             R                         R RNQ DNS                 GS++G K
Sbjct: 1522 GRYG---------------------ANRGRNQ-DNSWRGGRGNFGDRTSQNSQGSSWG-K 1558

Query: 717  FDGARTSNDSG----------------SWGPGRGNFSLVDSRDNRDN----WAN--EEKK 604
             D   +S+  G                +WG    N+   D+    +N    W N  EEK 
Sbjct: 1559 SDAVNSSDQQGNNDWSRGKPAAGESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEK- 1617

Query: 603  GWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEFA 424
              +SW+   A    ++  E+N+ G  +  G  S           G +S         E  
Sbjct: 1618 --NSWNTGRASGVESSGWEKNSTGSGRASGDQSAGWEKSSPGNVGAMSGGGSREKPKEAE 1675

Query: 423  QAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                DQG  WDKAAG+W      + SKGGW
Sbjct: 1676 GGGADQGSCWDKAAGAWGGAKGGSSSKGGW 1705



 Score =  112 bits (281), Expect = 1e-21
 Identities = 132/610 (21%), Positives = 212/610 (34%), Gaps = 51/610 (8%)
 Frame = -3

Query: 2019 SGGTRDDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
            + G  D+  + +  W     + Q+++ T    +   G  N    +S   +  G +  +W 
Sbjct: 686  AAGNTDNKTDDVDPWGSKVKSDQSAD-TWANAAAPSGDQNSSWDKSTTNAASG-QADTWQ 743

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQ 1660
            N   +   +   K       WEKE     DS   W       N   N D  +    + W 
Sbjct: 744  NNSNDWSNKGSQKSTSDAGGWEKEKTLASDSGGSWGT----GNKISNLDNSKTGGDNAWD 799

Query: 1659 QSSFKDTSREKTVDGGWDKPRVDEPRNILKAAA---ETCSWXXXXXXXXXXXRVSLNKSS 1489
            ++S     ++K     W+     EP N  K+ A   +T SW            ++++   
Sbjct: 800  KAS---NDKDKGKGSSWN-----EPNNWTKSEAVTSKTDSWDVKGKA------IAMDDGD 845

Query: 1488 NW--TDSQTISSNEADAWDN-KGKG-TIADEDSWGKANNS---------------QERKF 1366
             W     + I  NE D+WD  KGKG  I ++DSWGKA                  +  + 
Sbjct: 846  TWGKAKGKGIVINEDDSWDKAKGKGIVIKEDDSWGKATGKGIVINDDDTWGKAKGKGIEM 905

Query: 1365 DVDDNW---------AGNSNQN------EERSSLGCGNQSSCWDAATKSLHQVDEWGTAK 1231
            + DD W         +GN +QN      +E+     GNQS  WDAA KS        T  
Sbjct: 906  NEDDPWGRAATNQSKSGNESQNWGSSQSQEKDGAFKGNQSGGWDAAAKS--------TQS 957

Query: 1230 DSFAGKSDQWKGISE--MDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXX 1057
             +  G +  W   ++   +TE G WN+   SNQ+ N+NW +PKSFG   D+   WNK   
Sbjct: 958  SAAGGNTSSWDKAAKEKTETESGNWNKAGVSNQNPNDNWYKPKSFG--GDSMSNWNKGED 1015

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCSWG--SGRGRNDETGGDR--Q 889
                                                ++  W   SG   N+  GG++  +
Sbjct: 1016 KADRDNQTDSWNKPKSFDGGDW----------AKSDKQGGWNKPSGNYGNNGAGGEKHEE 1065

Query: 888  SKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDG 709
              WN +                        DN+                 G   G  F  
Sbjct: 1066 RNWNRKGDFDGSKGSSWNRGGRYGGRGRGCDNNEFGDSRDNSVDYRPFGRGGGRGGGFGR 1125

Query: 708  ARTSNDSGS-----WGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQEE 544
             R   DS          G G +S   S     +WA+++  GW     D++     N++  
Sbjct: 1126 GRGRGDSSDCRNERQSSGEGTYSKAPS-----SWASDQGAGW-----DKSSSFRRNEKPT 1175

Query: 543  NNWGRTKDPGSSSHSVADKWSTGTGDVSKAAET---WSNIEFAQAAGDQGYSWDKAAGSW 373
            +N+ + KD   +++     W   +    K  +T   W++ +     G    S D     W
Sbjct: 1176 DNFIQDKD---AANEAGKSWGAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKW 1232

Query: 372  NPNNETNGSK 343
            N +  ++  K
Sbjct: 1233 NASKSSSWDK 1242



 Score = 74.7 bits (182), Expect = 7e-10
 Identities = 141/698 (20%), Positives = 226/698 (32%), Gaps = 153/698 (21%)
 Frame = -3

Query: 1980 NWDKG---HCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN------NLPQ 1828
            +WDK       T++ NW     S      N +D   K KSF G  +S+WN      +   
Sbjct: 966  SWDKAAKEKTETESGNWNKAGVSNQ----NPNDNWYKPKSFGGDSMSNWNKGEDKADRDN 1021

Query: 1827 ETDTRTDTKFVDGG--------SNWEKE--------ARTPKDSNSDWER---LQTCKNSE 1705
            +TD+    K  DGG          W K         A   K    +W R       K S 
Sbjct: 1022 QTDSWNKPKSFDGGDWAKSDKQGGWNKPSGNYGNNGAGGEKHEERNWNRKGDFDGSKGSS 1081

Query: 1704 WNNDGERGTESSGWQQSSFKDTSREKTVD-----------GGWDKPR----VDEPRNILK 1570
            WN  G  G    G   + F D SR+ +VD           GG+ + R      + RN  +
Sbjct: 1082 WNRGGRYGGRGRGCDNNEFGD-SRDNSVDYRPFGRGGGRGGGFGRGRGRGDSSDCRNERQ 1140

Query: 1569 AAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSN---EADAWDNKGKGTIADEDSW 1399
            ++ E  ++               +KSS++  ++  + N   + DA +  GK       SW
Sbjct: 1141 SSGEG-TYSKAPSSWASDQGAGWDKSSSFRRNEKPTDNFIQDKDAANEAGK-------SW 1192

Query: 1398 GKANNSQERKFDVDDNWAGNSNQ----NEERSSLGCG-----NQSSCWDAATKSLHQVDE 1246
            G  + S+ +K D D NW  + ++      +RS  G G     ++SS WD  +      D 
Sbjct: 1193 GAKSLSEPKKDDTDTNWTSSDSKWNLGQSKRSEDGGGDKWNASKSSSWDKFSSENKSADA 1252

Query: 1245 ------WGTA-------KDSFAGKS----DQWKGISEMDTEPGAWNQTQFSNQSGNNNWN 1117
                  W ++          F+GK+    D   G  E + +P A   ++ ++++GN++++
Sbjct: 1253 SVPTSGWNSSNSLQDKQSSGFSGKTFAAEDAGAG-QECEADPWA---SKVTSKAGNDSFD 1308

Query: 1116 RPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGARRCS 937
                         GWNKA                                 P    +  +
Sbjct: 1309 A------------GWNKA-------------STKSGTNFDLLEKTKHASSDPAANDKSDA 1343

Query: 936  WGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXX 757
            W + +GR    G + +  W                       + Q D SL          
Sbjct: 1344 W-NAKGRKSTLGSEEEDAWGKASKPQENITTETNVGNSSTWNKEQ-DTSLNSGSKWESAA 1401

Query: 756  XXXXXXGSNYGN-------------------KFDGARTS------NDSG------SWGPG 670
                   S + N                    FDG   S      N  G        G G
Sbjct: 1402 SQRSQSESQWNNWEKTKDKGATPTDSWSKCSSFDGGNESTWDKPRNSEGRGFGGFGGGRG 1461

Query: 669  RGNFS---LVDSRDN------------RDNWANEEKKGWSSWS---NDEAGKASNNDQ-- 550
            RG +S      SRDN            R +W  +E  G S+W+   + ++G+ ++ ++  
Sbjct: 1462 RGRYSGEGGYRSRDNDWNKPADRGNDHRSSWNRDENNGSSNWNQRRDSDSGRGTSGERGR 1521

Query: 549  ------------------------------EENNWGRTKDPGSSSHSVADKWSTGTGDVS 460
                                          + ++WG++    SS     + WS G     
Sbjct: 1522 GRYGANRGRNQDNSWRGGRGNFGDRTSQNSQGSSWGKSDAVNSSDQQGNNDWSRGKPAAG 1581

Query: 459  KAAETWSNIEFAQAAGDQGYSWDKAAGSWNPNNETNGS 346
            ++A  W          D     + A  SWN N E   S
Sbjct: 1582 ESASAWGKQSSNWGKDDTEIKGNNAPSSWNNNTEEKNS 1619


>ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylation 3 [Phoenix
            dactylifera]
          Length = 2039

 Score =  134 bits (336), Expect = 3e-28
 Identities = 176/779 (22%), Positives = 259/779 (33%), Gaps = 127/779 (16%)
 Frame = -3

Query: 2298 PDGTWSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRV 2119
            P   W+ N   G   +   G+   ++  +   H+   NG+K+FD    S W G   D + 
Sbjct: 1234 PSSGWAGNKTPGSGKS--EGFSEIEESTENVDHQGGLNGRKSFDTGCSSGWGGQSSDWKK 1291

Query: 2118 GGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQ---- 1951
              +           W                G +    + S      WDK     +    
Sbjct: 1292 DEAGNNSRSSPNSNWKKEASVKDAAGG----GDNWNMSNRSGRNQSGWDKWSSGNEQVGK 1347

Query: 1950 ----------TSNWTDKQTSGTGGPPN---QDDIRSKNKSFDGHRLSSWNN---LPQETD 1819
                      +S  +DK+    G        ++   K      H    W +        D
Sbjct: 1348 AGAGSMEGWNSSRPSDKKQYCVGADKTLAGNEEACRKTVGGQEHEADPWGSKVAYGARGD 1407

Query: 1818 TRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNS-EWNNDGERGTESSGWQQSSFKD 1642
                 K  D   NW K      +  S   +    + + +   DG+   ++ GW ++ FK 
Sbjct: 1408 AWNSRKAAD---NWGKATGLCIEEISPLSKATVGERAIDVGQDGDCPKDADGWNRT-FKS 1463

Query: 1641 TSREKTVDGGWDKPRVD--EPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQT 1468
                         P +D  E   +L +     SW            VS +K S+W   + 
Sbjct: 1464 G------------PGIDGCEKAEVLPSMDAGQSWDKAETSKDKGKGVSWDKPSSWACPE- 1510

Query: 1467 ISSNEADAWDNKGKGTIADE-DSWGKANNSQERKFDVDDNWAGNSNQNEERSSLGCGNQS 1291
            +S+++AD WD K KG + +E D WGK++  QE   +  D W  NS+QN E +    GN++
Sbjct: 1511 VSNDKADVWDIKDKGLVRNEVDVWGKSSKCQENNNETKD-WGSNSSQNREDNKFIGGNKA 1569

Query: 1290 SCWDAATKSLHQVDEWGTAKDSF--AGKSDQW-KGISEMDTEPGAWNQTQFSNQSGNNNW 1120
            +  DAA     Q    G    S+   G++D W K   + + E G W++T FS+Q  N  W
Sbjct: 1570 NNLDAAASHGTQSAARGGQSSSWDHCGQTDNWGKAREKNEAEAGGWSKTGFSSQIQNARW 1629

Query: 1119 NRPKSFGEE--------ADNRDG--------WNKAXXXXXXXXXXXXXXXXXXXXXXXXX 988
            +  KSFG +         DN D         WNK                          
Sbjct: 1630 DETKSFGGDNASNWSKGIDNEDAFRNGRPDNWNKPRNFEGGCGFGRGRGRGRNAGASGNK 1689

Query: 987  XXXXXXXRPMD--GARRCSWGSGRGRNDETGGDR--QSKWNSQXXXXXXXXXXXXXXXXX 820
                   +P+D  G +R SWG GR  N+E GG R  +S WN Q                 
Sbjct: 1690 DLDGNWNKPLDREGGQRSSWGRGRDGNNEAGGGRGQESNWNRQRDFGGGGGGRGSSWGRG 1749

Query: 819  XRE------RNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSG--SWGPGRG 664
                     R Q D                   G  +G    G   ++  G  S+G GRG
Sbjct: 1750 SGRTGARGGRGQGDK---WNEPEDKEWGLGSSRGGGWGRNGAGDERNDSDGRQSYGRGRG 1806

Query: 663  NFSLV------DSRDN----------RDNWANEEKKGW--------------SSWSNDEA 574
                +      + ++N            NWAN++  GW              S WS   +
Sbjct: 1807 GRDYIRFSNRNEEQENFGDGTFPKASTSNWANDQSPGWGKLDKGKSFDAGGSSGWSKQSS 1866

Query: 573  GKASNNDQEENNWG----------------------RTKDPGSSSHSVADKWSTG---TG 469
                N D   NNW                          DPG S  S  DKWS+G    G
Sbjct: 1867 D--GNKDGASNNWNSPDSSWNHGASVKKPAGGGDNWNVSDPGGSHSSDRDKWSSGNEQAG 1924

Query: 468  DVSKAAE-TW-----SNIEFAQAAGDQGYSWDKAAG-----------SWNPNNETNGSK 343
                AAE  W     S  E +   GD+  + D+ AG           +WN      GS+
Sbjct: 1925 RAGVAAEGGWNGSKPSGKEHSFGRGDKTLAGDEEAGKKTVGSNNGGNNWNTTKAAGGSR 1983



 Score =  127 bits (319), Expect = 4e-26
 Identities = 150/668 (22%), Positives = 229/668 (34%), Gaps = 129/668 (19%)
 Frame = -3

Query: 1959 ATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVDGGSN 1780
            A   SN++D   +G       D     +K   G R  +W++          +K +DG   
Sbjct: 660  AFPASNFSDVDNNGHKADEGHDADPWGSKVISGARADAWHS----------SKAMDG--- 706

Query: 1779 WEKEARTPKDSNSDW----------ERLQTCKNSE--WNN----------DGERGTE--- 1675
            W K A +  + +S W          ++ + C      WN           DG + ++   
Sbjct: 707  WGKAASSSGEQDSQWNMTAAGEKVTDQARNCIEDADGWNGKALAKTSTEIDGSKKSKPQS 766

Query: 1674 --SSGWQQSSF---KDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXR 1510
                GW + +F    +    + V G WDK R D   + LK +     W            
Sbjct: 767  GGDGGWGRGNFGSGNNLDPSENVTGNWDKQRADNLGDSLKNSDGVSGWDRAATSKDKGKD 826

Query: 1509 VSLNKSSNWTDSQTISSNEADAWDNKGKGTIADED-SWGKANNSQERKFDVDDNW----- 1348
            +S ++S+NWT  + +S+++  +WD KGK  I++ED SWGKA ++QE+  + ++NW     
Sbjct: 827  LSWDRSNNWTRPEVVSNDKVSSWDVKGKAIISNEDDSWGKAASTQEK--NTNENWGKFSV 884

Query: 1347 ---------AGNSNQNEE------------RSSLGCGNQSSCWDAATKSLH--QVDEWGT 1237
                     A  S+  E+            +S++  G QSS WD A ++LH  ++D WG 
Sbjct: 885  GSGQIKEKDATRSDGGEQADRWDAAASNWTQSAVQHGGQSSSWDKA-RNLHAGRLDNWGK 943

Query: 1236 ----------------------------------------------AKDSFAGKSDQWKG 1195
                                                          AKD   G+SD W  
Sbjct: 944  SNDKSEAETRDWNKSGFSSQSQNARREEPKSFGGDKPGGLSSSWDKAKDPHGGQSDNWGE 1003

Query: 1194 ISEM-DTEPGAWNQTQFSNQSGNNNWNRPK--------SFG-----------EEADNRDG 1075
            ++E  + E G W++  FSNQS N  W+ P+        SFG           +  D  D 
Sbjct: 1004 VNETSEAETGGWSKAGFSNQSENVRWDEPQNARWDGSTSFGGDNAFNWRKAVDGGDRMDN 1063

Query: 1074 WNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPM--DGARRCSWGSGRGRNDETG 901
            W K                                   +  DG+++ SWG G  RN E G
Sbjct: 1064 WKKPRNFEGGHGFGQGRGRGWNAGESGNKDRDGSWNTTVSSDGSQKSSWGKGWDRNIEAG 1123

Query: 900  GD--RQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNY 727
            GD  +++ WN Q                                                
Sbjct: 1124 GDGGQENNWNQQRGS--------------------------------------------- 1138

Query: 726  GNKFDGARTSNDSGSWGPGRGNFSLVDSRDNRDNWANEEKKGWSSWSNDEAGKASNNDQE 547
                DG R S     WG GRG +     R   DNW     +G   W +   G    N   
Sbjct: 1139 ----DGGRGSR----WGGGRGRYGSRGGRGQDDNWNGPGPRG--GWGSARGGGRGRNGGG 1188

Query: 546  ENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAETWSNIEFAQAAGDQGYSWDKAAGSWNP 367
            +N         +SS      +  G G        W  ++ +    DQGY WD  A   NP
Sbjct: 1189 DN---------ASSFDGTRSFDRGRG--RGRGHGW--VQSSNLKDDQGYCWD-GAFQKNP 1234

Query: 366  NNETNGSK 343
            ++   G+K
Sbjct: 1235 SSGWAGNK 1242



 Score =  102 bits (254), Expect = 2e-18
 Identities = 146/724 (20%), Positives = 230/724 (31%), Gaps = 71/724 (9%)
 Frame = -3

Query: 2295 DGTWSN--NHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHR 2122
            DG+W+   + D  Q ++W +GW RN +    G  ENNWN Q+  DG R S W GGRG + 
Sbjct: 1095 DGSWNTTVSSDGSQKSSWGKGWDRNIEAGGDGGQENNWNQQRGSDGGRGSRWGGGRGRYG 1154

Query: 2121 VGGSVGLDDG----DEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWD------ 1972
              G  G DD        G W S                 GG    SF+  R++D      
Sbjct: 1155 SRGGRGQDDNWNGPGPRGGWGSARGGGRGR-------NGGGDNASSFDGTRSFDRGRGRG 1207

Query: 1971 KGHCATQTSN--------------------WTDKQTSGTGGPPNQDDIRSKNKSFDGHRL 1852
            +GH   Q+SN                    W   +T G+G      +I    ++ D    
Sbjct: 1208 RGHGWVQSSNLKDDQGYCWDGAFQKNPSSGWAGNKTPGSGKSEGFSEIEESTENVDH--- 1264

Query: 1851 SSWNNLPQETDTRTDTKFVDGGSNWEKEA---RTPKDSNSDWERLQTCKNS-----EWNN 1696
                N  +  DT   + +    S+W+K+     +    NS+W++  + K++      WN 
Sbjct: 1265 QGGLNGRKSFDTGCSSGWGGQSSDWKKDEAGNNSRSSPNSNWKKEASVKDAAGGGDNWNM 1324

Query: 1695 DGERGTESSGWQQSSFKDTSREKTVDG---GWDKPRVDEPRNILKAAAETCSWXXXXXXX 1525
                G   SGW + S  +    K   G   GW+  R  + +     A +T +        
Sbjct: 1325 SNRSGRNQSGWDKWSSGNEQVGKAGAGSMEGWNSSRPSDKKQYCVGADKTLAGNEEACRK 1384

Query: 1524 XXXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWA 1345
                    +++  W  S+       DAW+++        D+WGKA      +        
Sbjct: 1385 TVGG--QEHEADPW-GSKVAYGARGDAWNSRKAA-----DNWGKATGLCIEEISPLSKAT 1436

Query: 1344 GNSNQNEERSSLGCGNQSSCWDAATKSLHQVD-----------EWGTAKDSFAGKSDQWK 1198
                  +      C   +  W+   KS   +D           + G + D      D+ K
Sbjct: 1437 VGERAIDVGQDGDCPKDADGWNRTFKSGPGIDGCEKAEVLPSMDAGQSWDKAETSKDKGK 1496

Query: 1197 GISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXX 1018
            G+S    +P +W   + SN    + W+  K  G   +  D W K+               
Sbjct: 1497 GVSW--DKPSSWACPEVSNDKA-DVWD-IKDKGLVRNEVDVWGKSSKCQENNNETKDWGS 1552

Query: 1017 XXXXXXXXXXXXXXXXXRPMDGARRCSWGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXX 838
                               +D A      +  G      G + S W+             
Sbjct: 1553 NSSQNREDNKFIGGNKANNLDAA------ASHGTQSAARGGQSSSWD------------- 1593

Query: 837  XXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPGRGNF 658
                       Q DN                   + + ++   AR        G    N+
Sbjct: 1594 --------HCGQTDN--WGKAREKNEAEAGGWSKTGFSSQIQNARWDETKSFGGDNASNW 1643

Query: 657  SLVDSRDNRDNWANEEKKGWSSWSNDEAG-------------KASNNDQEENNWGRTKDP 517
            S     DN D + N     W+   N E G              AS N   + NW +  D 
Sbjct: 1644 S--KGIDNEDAFRNGRPDNWNKPRNFEGGCGFGRGRGRGRNAGASGNKDLDGNWNKPLDR 1701

Query: 516  GSSSHSVADKWSTGTGDVSKAAETWSN----IEFAQAAGDQGYSWDKAAGSWNPNNETNG 349
                 S   +   G  +        SN     +F    G +G SW + +G         G
Sbjct: 1702 EGGQRSSWGRGRDGNNEAGGGRGQESNWNRQRDFGGGGGGRGSSWGRGSG-------RTG 1754

Query: 348  SKGG 337
            ++GG
Sbjct: 1755 ARGG 1758



 Score = 77.0 bits (188), Expect = 1e-10
 Identities = 91/396 (22%), Positives = 140/396 (35%), Gaps = 36/396 (9%)
 Frame = -3

Query: 2295 DGTWSNNHDQ--GQTATWERGWQRNDDGRDPGHHENNWNGQKNF---DGERQSSWVGGRG 2131
            DG W+   D+  GQ ++W RG   N++       E+NWN Q++F    G R SSW  GRG
Sbjct: 1692 DGNWNKPLDREGGQRSSWGRGRDGNNEAGGGRGQESNWNRQRDFGGGGGGRGSSW--GRG 1749

Query: 2130 DHRVGGSVGLDDGD-----EEGKW------------ISXXXXXXXXXXXACYGQSGGTRD 2002
              R G   G   GD     E+ +W                           YG+  G RD
Sbjct: 1750 SGRTGARGGRGQGDKWNEPEDKEWGLGSSRGGGWGRNGAGDERNDSDGRQSYGRGRGGRD 1809

Query: 2001 DSFNQIRNWDKGHCA------TQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWN 1840
                  RN ++ +          TSNW + Q+ G G          K KSFD    S W+
Sbjct: 1810 YIRFSNRNEEQENFGDGTFPKASTSNWANDQSPGWGK-------LDKGKSFDAGGSSGWS 1862

Query: 1839 NLPQETDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCK-----NSEWNNDGERGTE 1675
               Q +D   D       +NW          +S W    + K        WN     G+ 
Sbjct: 1863 K--QSSDGNKD----GASNNW-------NSPDSSWNHGASVKKPAGGGDNWNVSDPGGSH 1909

Query: 1674 SSG---WQQSSFKDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVS 1504
            SS    W   + +        +GGW+  +     +      +T +              S
Sbjct: 1910 SSDRDKWSSGNEQAGRAGVAAEGGWNGSKPSGKEHSFGRGDKTLAGDEEAGKKTVG---S 1966

Query: 1503 LNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNE 1324
             N  +NW  ++    + + AWD   K +  +E++     +S+ ++ +             
Sbjct: 1967 NNGGNNWNTTKAAGGSRSSAWD---KSSAGNEEAVAAEISSKAKEDE------------- 2010

Query: 1323 ERSSLGCGNQSSCWDAATKSLHQVDEWGTAKDSFAG 1216
                 G G + S W+ A+ +      W  AKD  AG
Sbjct: 2011 -----GSGRRGSGWEKASAA------WAEAKDGSAG 2035



 Score = 64.7 bits (156), Expect = 9e-07
 Identities = 99/469 (21%), Positives = 160/469 (34%), Gaps = 48/469 (10%)
 Frame = -3

Query: 2325 ENWNKSSYFPDGT---WSNNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQ 2155
            +NW KS+   +     W+ +    Q+    R   ++  G  PG   ++W+  K+  G + 
Sbjct: 939  DNWGKSNDKSEAETRDWNKSGFSSQSQNARREEPKSFGGDKPGGLSSSWDKAKDPHGGQS 998

Query: 2154 SSW--VGGRGDHRVGG--SVGLD--------DGDEEGKWISXXXXXXXXXXXACYGQSGG 2011
             +W  V    +   GG    G          D  +  +W                   GG
Sbjct: 999  DNWGEVNETSEAETGGWSKAGFSNQSENVRWDEPQNARWDGSTSFGGDNAFNWRKAVDGG 1058

Query: 2010 TRDDSFNQIRNWDKGHCATQ--TSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNN 1837
             R D++ + RN++ GH   Q     W     +G  G  ++D   +   S DG + SSW  
Sbjct: 1059 DRMDNWKKPRNFEGGHGFGQGRGRGW----NAGESGNKDRDGSWNTTVSSDGSQKSSWG- 1113

Query: 1836 LPQETDTRTDTKFVDGG--SNWEKEARTPKDSNSDW--------ERLQTCKNSEWNNDGE 1687
               +   R      DGG  +NW ++  +     S W         R    ++  WN  G 
Sbjct: 1114 ---KGWDRNIEAGGDGGQENNWNQQRGSDGGRGSRWGGGRGRYGSRGGRGQDDNWNGPGP 1170

Query: 1686 RGTESSGWQQSSFKDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRV 1507
            RG    GW  +      R     GG +    D  R+  +                     
Sbjct: 1171 RG----GWGSARGGGRGRN---GGGDNASSFDGTRSFDRGRGR----------------- 1206

Query: 1506 SLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNS-------------QERKF 1366
               +   W  S  +  ++   WD    G      S G A N              +E   
Sbjct: 1207 --GRGHGWVQSSNLKDDQGYCWD----GAFQKNPSSGWAGNKTPGSGKSEGFSEIEESTE 1260

Query: 1365 DVDDNWAGNSNQN-EERSSLGCGNQSSCWDAATKSLHQVDEWGTAKDSFAGKSDQWKGIS 1189
            +VD     N  ++ +   S G G QSS W        + DE G   +S +  +  WK  +
Sbjct: 1261 NVDHQGGLNGRKSFDTGCSSGWGGQSSDW--------KKDEAG--NNSRSSPNSNWKKEA 1310

Query: 1188 EMDTEPGAWNQTQFSNQSGNN--NWNRPKSFGEE-----ADNRDGWNKA 1063
             +    G  +    SN+SG N   W++  S  E+     A + +GWN +
Sbjct: 1311 SVKDAAGGGDNWNMSNRSGRNQSGWDKWSSGNEQVGKAGAGSMEGWNSS 1359


>ref|XP_019198592.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Ipomoea
            nil]
          Length = 1703

 Score =  118 bits (296), Expect = 2e-23
 Identities = 163/730 (22%), Positives = 240/730 (32%), Gaps = 67/730 (9%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG-----------RDPGHHENNWNG 2182
            +WNK    P      N D G     E G  W + D G             PG  E +W  
Sbjct: 1021 SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKKEDKSSWNKPGG-ETSWGQ 1079

Query: 2181 QKNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTR 2005
            Q + DG   S   GG      GG  G  DG D++G W                G+ GG  
Sbjct: 1080 QGDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRG 1137

Query: 2004 DDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQE 1825
             D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   
Sbjct: 1138 RDNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSS 1191

Query: 1824 TDTRTDTKFVDGGSNWEKEARTPKDSNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFK 1645
            T  +TD      GS +           + W+  Q     +  ++ E    SSGW  +  +
Sbjct: 1192 TSWKTDQSEKQEGSGFA-------GGQTSWKSSQESSWGKVTSNDENNKASSGWGSTQSE 1244

Query: 1644 DTSREKTVDG-GWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQT 1468
             T   K     GW   + ++  +  KA + +                + NKSS+W     
Sbjct: 1245 KTESNKAGSSLGWGSNQSEKTESN-KAGSNSGWGSNQSEKTERDKDTAFNKSSDWQSE-- 1301

Query: 1467 ISSNEADAWDNKGKGTIADEDSWG-KANNSQERKFDVDDNWA-GNSNQNEERSSLGCGNQ 1294
                    W+       +   SW  KA+ + E+     D W+ G  + +E   S G   +
Sbjct: 1302 ------GGWNAAKPSGESQSSSWNRKASTNDEKNTSGADGWSTGKGSGSETNQSSGWNKK 1355

Query: 1293 SS----CWDAATKSLHQVDEWGTAKDSFAGKSDQWKGISEMDTEPGAWNQTQFSNQSGNN 1126
            SS      DA +   +    W T+  S   +S  WK  SE   +P AW        S  +
Sbjct: 1356 SSDGGGIGDAVSSWGNNEQSWKTSNSSAGNQSSGWK--SEGSQDPNAW--------SSKS 1405

Query: 1125 NWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGA- 949
            NWN    F  +    DG N+                                     G  
Sbjct: 1406 NWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSDRGGFRGRGRSDRGGFQGRGGSDRGGF 1465

Query: 948  -------RRCSWGSGRGRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNS 790
                   R    G GRGR D++G     +WN++                       +D S
Sbjct: 1466 RGRGGFDRGGFGGRGRGRRDQSG-----EWNNRNDFGDGKPSWSNGSGSDPASWKASDGS 1520

Query: 789  LXXXXXXXXXXXXXXXXGSNYGNKFDGARTS-------NDSG-----SWGPGRG-NFSLV 649
                                  +K DG  +        NDSG     SW  G G +    
Sbjct: 1521 GSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGGWNNRNDSGDGKPPSWKNGSGSDAGGW 1580

Query: 648  DSRDNRDNW----ANEEKKGWSSWSNDEAGKASNND---QEENNWGRTKDPGSSSHSV-- 496
             S DN+ +W    +  EK    SWS   AG  S  D    E   W +    GSS+++   
Sbjct: 1581 KSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSKTDGHVSEAGGWNK----GSSTNAAGG 1634

Query: 495  ---ADKWSTGTGDVSKAAETWSNIEF-------------AQAAGDQGYSWDKAAGSWNPN 364
               A KWST        + +W++ +              A  +G    +W KA+ SW   
Sbjct: 1635 DASASKWSTQENTSGNLSSSWNSSQSTASGLEKSKEACGATESGGPADAWGKASSSWGKG 1694

Query: 363  NETNGSKGGW 334
            ++  G KGGW
Sbjct: 1695 SDGAG-KGGW 1703


>ref|XP_019198594.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X5 [Ipomoea
            nil]
          Length = 1696

 Score =  115 bits (288), Expect = 2e-22
 Identities = 167/753 (22%), Positives = 243/753 (32%), Gaps = 90/753 (11%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG----------RDPGHHENNWNGQ 2179
            +WNK    P      N D G     E G  W + D G            PG  E +W  Q
Sbjct: 984  SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKQDKSSWNKPGG-ETSWGQQ 1042

Query: 2178 KNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTRD 2002
             + DG   S   GG      GG  G  DG D++G W                G+ GG   
Sbjct: 1043 GDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRGR 1100

Query: 2001 DSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQET 1822
            D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   T
Sbjct: 1101 DNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSST 1154

Query: 1821 DTRTDTKFVDGGS---------------NWEKEARTPKDSNSDWERLQTCKNSEWNNDGE 1687
              +TD      GS               +W K     +++   W  L      +     E
Sbjct: 1155 SWKTDQSEKQEGSGFAGGQTSWKSSQESSWGKVTSNDENNKDGWGNLNASGKKQGCGTVE 1214

Query: 1686 RGTESSGW----QQSSFKDTSREKTVDG------GWDKPRVDEPRNILKAAAETCSWXXX 1537
               ES+ W      S +  T  EKT         GW   + ++  +  KA + +      
Sbjct: 1215 EAGESNKWLSNKPSSGWGSTQSEKTESNKAGSSLGWGSNQSEKTESN-KAGSNSGWGSNQ 1273

Query: 1536 XXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWG-KANNSQERKFDV 1360
                      + NKSS+W             W+       +   SW  KA+ + E+    
Sbjct: 1274 SEKTERDKDTAFNKSSDWQSE--------GGWNAAKPSGESQSSSWNRKASTNDEKNTSG 1325

Query: 1359 DDNWA-GNSNQNEERSSLGCGNQSS----CWDAATKSLHQVDEWGTAKDSFAGKSDQWKG 1195
             D W+ G  + +E   S G   +SS      DA +   +    W T+  S   +S  WK 
Sbjct: 1326 ADGWSTGKGSGSETNQSSGWNKKSSDGGGIGDAVSSWGNNEQSWKTSNSSAGNQSSGWK- 1384

Query: 1194 ISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXX 1015
             SE   +P AW        S  +NWN    F  +    DG N+                 
Sbjct: 1385 -SEGSQDPNAW--------SSKSNWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSDRGG 1435

Query: 1014 XXXXXXXXXXXXXXXXRPMDGA--------RRCSWGSGRGRNDETGGDRQSKWNSQXXXX 859
                                G         R    G GRGR D++G     +WN++    
Sbjct: 1436 FRGRGRSDRGGFQGRGGSDRGGFRGRGGFDRGGFGGRGRGRRDQSG-----EWNNRNDFG 1490

Query: 858  XXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTS------ 697
                               +D S                      +K DG  +       
Sbjct: 1491 DGKPSWSNGSGSDPASWKASDGSGSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGGWNN 1550

Query: 696  -NDSG-----SWGPGRG-NFSLVDSRDNRDNW----ANEEKKGWSSWSNDEAGKASNND- 553
             NDSG     SW  G G +     S DN+ +W    +  EK    SWS   AG  S  D 
Sbjct: 1551 RNDSGDGKPPSWKNGSGSDAGGWKSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSKTDG 1608

Query: 552  --QEENNWGRTKDPGSSSHSV-----ADKWSTGTGDVSKAAETWSNIEF----------- 427
               E   W +    GSS+++      A KWST        + +W++ +            
Sbjct: 1609 HVSEAGGWNK----GSSTNAAGGDASASKWSTQENTSGNLSSSWNSSQSTASGLEKSKEA 1664

Query: 426  --AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
              A  +G    +W KA+ SW   ++  G KGGW
Sbjct: 1665 CGATESGGPADAWGKASSSWGKGSDGAG-KGGW 1696


>ref|XP_019198593.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Ipomoea
            nil]
          Length = 1697

 Score =  115 bits (287), Expect = 2e-22
 Identities = 167/754 (22%), Positives = 243/754 (32%), Gaps = 91/754 (12%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG-----------RDPGHHENNWNG 2182
            +WNK    P      N D G     E G  W + D G             PG  E +W  
Sbjct: 984  SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKKEDKSSWNKPGG-ETSWGQ 1042

Query: 2181 QKNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTR 2005
            Q + DG   S   GG      GG  G  DG D++G W                G+ GG  
Sbjct: 1043 QGDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRG 1100

Query: 2004 DDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQE 1825
             D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   
Sbjct: 1101 RDNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSS 1154

Query: 1824 TDTRTDTKFVDGGS---------------NWEKEARTPKDSNSDWERLQTCKNSEWNNDG 1690
            T  +TD      GS               +W K     +++   W  L      +     
Sbjct: 1155 TSWKTDQSEKQEGSGFAGGQTSWKSSQESSWGKVTSNDENNKDGWGNLNASGKKQGCGTV 1214

Query: 1689 ERGTESSGW----QQSSFKDTSREKTVDG------GWDKPRVDEPRNILKAAAETCSWXX 1540
            E   ES+ W      S +  T  EKT         GW   + ++  +  KA + +     
Sbjct: 1215 EEAGESNKWLSNKPSSGWGSTQSEKTESNKAGSSLGWGSNQSEKTESN-KAGSNSGWGSN 1273

Query: 1539 XXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWG-KANNSQERKFD 1363
                       + NKSS+W             W+       +   SW  KA+ + E+   
Sbjct: 1274 QSEKTERDKDTAFNKSSDWQSE--------GGWNAAKPSGESQSSSWNRKASTNDEKNTS 1325

Query: 1362 VDDNWA-GNSNQNEERSSLGCGNQSS----CWDAATKSLHQVDEWGTAKDSFAGKSDQWK 1198
              D W+ G  + +E   S G   +SS      DA +   +    W T+  S   +S  WK
Sbjct: 1326 GADGWSTGKGSGSETNQSSGWNKKSSDGGGIGDAVSSWGNNEQSWKTSNSSAGNQSSGWK 1385

Query: 1197 GISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXX 1018
              SE   +P AW        S  +NWN    F  +    DG N+                
Sbjct: 1386 --SEGSQDPNAW--------SSKSNWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSDRG 1435

Query: 1017 XXXXXXXXXXXXXXXXXRPMDGA--------RRCSWGSGRGRNDETGGDRQSKWNSQXXX 862
                                 G         R    G GRGR D++G     +WN++   
Sbjct: 1436 GFRGRGRSDRGGFQGRGGSDRGGFRGRGGFDRGGFGGRGRGRRDQSG-----EWNNRNDF 1490

Query: 861  XXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTS----- 697
                                +D S                      +K DG  +      
Sbjct: 1491 GDGKPSWSNGSGSDPASWKASDGSGSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGGWN 1550

Query: 696  --NDSG-----SWGPGRG-NFSLVDSRDNRDNW----ANEEKKGWSSWSNDEAGKASNND 553
              NDSG     SW  G G +     S DN+ +W    +  EK    SWS   AG  S  D
Sbjct: 1551 NRNDSGDGKPPSWKNGSGSDAGGWKSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSKTD 1608

Query: 552  ---QEENNWGRTKDPGSSSHSV-----ADKWSTGTGDVSKAAETWSNIEF---------- 427
                E   W +    GSS+++      A KWST        + +W++ +           
Sbjct: 1609 GHVSEAGGWNK----GSSTNAAGGDASASKWSTQENTSGNLSSSWNSSQSTASGLEKSKE 1664

Query: 426  ---AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
               A  +G    +W KA+ SW   ++  G KGGW
Sbjct: 1665 ACGATESGGPADAWGKASSSWGKGSDGAG-KGGW 1697


>ref|XP_019198591.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Ipomoea
            nil]
          Length = 1713

 Score =  115 bits (287), Expect = 2e-22
 Identities = 167/754 (22%), Positives = 243/754 (32%), Gaps = 91/754 (12%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG-----------RDPGHHENNWNG 2182
            +WNK    P      N D G     E G  W + D G             PG  E +W  
Sbjct: 1000 SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKKEDKSSWNKPGG-ETSWGQ 1058

Query: 2181 QKNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTR 2005
            Q + DG   S   GG      GG  G  DG D++G W                G+ GG  
Sbjct: 1059 QGDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRG 1116

Query: 2004 DDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQE 1825
             D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   
Sbjct: 1117 RDNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSS 1170

Query: 1824 TDTRTDTKFVDGGS---------------NWEKEARTPKDSNSDWERLQTCKNSEWNNDG 1690
            T  +TD      GS               +W K     +++   W  L      +     
Sbjct: 1171 TSWKTDQSEKQEGSGFAGGQTSWKSSQESSWGKVTSNDENNKDGWGNLNASGKKQGCGTV 1230

Query: 1689 ERGTESSGW----QQSSFKDTSREKTVDG------GWDKPRVDEPRNILKAAAETCSWXX 1540
            E   ES+ W      S +  T  EKT         GW   + ++  +  KA + +     
Sbjct: 1231 EEAGESNKWLSNKPSSGWGSTQSEKTESNKAGSSLGWGSNQSEKTESN-KAGSNSGWGSN 1289

Query: 1539 XXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWG-KANNSQERKFD 1363
                       + NKSS+W             W+       +   SW  KA+ + E+   
Sbjct: 1290 QSEKTERDKDTAFNKSSDWQSE--------GGWNAAKPSGESQSSSWNRKASTNDEKNTS 1341

Query: 1362 VDDNWA-GNSNQNEERSSLGCGNQSS----CWDAATKSLHQVDEWGTAKDSFAGKSDQWK 1198
              D W+ G  + +E   S G   +SS      DA +   +    W T+  S   +S  WK
Sbjct: 1342 GADGWSTGKGSGSETNQSSGWNKKSSDGGGIGDAVSSWGNNEQSWKTSNSSAGNQSSGWK 1401

Query: 1197 GISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXX 1018
              SE   +P AW        S  +NWN    F  +    DG N+                
Sbjct: 1402 --SEGSQDPNAW--------SSKSNWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSDRG 1451

Query: 1017 XXXXXXXXXXXXXXXXXRPMDGA--------RRCSWGSGRGRNDETGGDRQSKWNSQXXX 862
                                 G         R    G GRGR D++G     +WN++   
Sbjct: 1452 GFRGRGRSDRGGFQGRGGSDRGGFRGRGGFDRGGFGGRGRGRRDQSG-----EWNNRNDF 1506

Query: 861  XXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTS----- 697
                                +D S                      +K DG  +      
Sbjct: 1507 GDGKPSWSNGSGSDPASWKASDGSGSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGGWN 1566

Query: 696  --NDSG-----SWGPGRG-NFSLVDSRDNRDNW----ANEEKKGWSSWSNDEAGKASNND 553
              NDSG     SW  G G +     S DN+ +W    +  EK    SWS   AG  S  D
Sbjct: 1567 NRNDSGDGKPPSWKNGSGSDAGGWKSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSKTD 1624

Query: 552  ---QEENNWGRTKDPGSSSHSV-----ADKWSTGTGDVSKAAETWSNIEF---------- 427
                E   W +    GSS+++      A KWST        + +W++ +           
Sbjct: 1625 GHVSEAGGWNK----GSSTNAAGGDASASKWSTQENTSGNLSSSWNSSQSTASGLEKSKE 1680

Query: 426  ---AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
               A  +G    +W KA+ SW   ++  G KGGW
Sbjct: 1681 ACGATESGGPADAWGKASSSWGKGSDGAG-KGGW 1713


>ref|XP_019198590.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Ipomoea
            nil]
          Length = 1734

 Score =  115 bits (287), Expect = 2e-22
 Identities = 167/754 (22%), Positives = 243/754 (32%), Gaps = 91/754 (12%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG-----------RDPGHHENNWNG 2182
            +WNK    P      N D G     E G  W + D G             PG  E +W  
Sbjct: 1021 SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKKEDKSSWNKPGG-ETSWGQ 1079

Query: 2181 QKNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTR 2005
            Q + DG   S   GG      GG  G  DG D++G W                G+ GG  
Sbjct: 1080 QGDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRG 1137

Query: 2004 DDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQE 1825
             D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   
Sbjct: 1138 RDNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSS 1191

Query: 1824 TDTRTDTKFVDGGS---------------NWEKEARTPKDSNSDWERLQTCKNSEWNNDG 1690
            T  +TD      GS               +W K     +++   W  L      +     
Sbjct: 1192 TSWKTDQSEKQEGSGFAGGQTSWKSSQESSWGKVTSNDENNKDGWGNLNASGKKQGCGTV 1251

Query: 1689 ERGTESSGW----QQSSFKDTSREKTVDG------GWDKPRVDEPRNILKAAAETCSWXX 1540
            E   ES+ W      S +  T  EKT         GW   + ++  +  KA + +     
Sbjct: 1252 EEAGESNKWLSNKPSSGWGSTQSEKTESNKAGSSLGWGSNQSEKTESN-KAGSNSGWGSN 1310

Query: 1539 XXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWG-KANNSQERKFD 1363
                       + NKSS+W             W+       +   SW  KA+ + E+   
Sbjct: 1311 QSEKTERDKDTAFNKSSDWQSE--------GGWNAAKPSGESQSSSWNRKASTNDEKNTS 1362

Query: 1362 VDDNWA-GNSNQNEERSSLGCGNQSS----CWDAATKSLHQVDEWGTAKDSFAGKSDQWK 1198
              D W+ G  + +E   S G   +SS      DA +   +    W T+  S   +S  WK
Sbjct: 1363 GADGWSTGKGSGSETNQSSGWNKKSSDGGGIGDAVSSWGNNEQSWKTSNSSAGNQSSGWK 1422

Query: 1197 GISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXX 1018
              SE   +P AW        S  +NWN    F  +    DG N+                
Sbjct: 1423 --SEGSQDPNAW--------SSKSNWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSDRG 1472

Query: 1017 XXXXXXXXXXXXXXXXXRPMDGA--------RRCSWGSGRGRNDETGGDRQSKWNSQXXX 862
                                 G         R    G GRGR D++G     +WN++   
Sbjct: 1473 GFRGRGRSDRGGFQGRGGSDRGGFRGRGGFDRGGFGGRGRGRRDQSG-----EWNNRNDF 1527

Query: 861  XXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTS----- 697
                                +D S                      +K DG  +      
Sbjct: 1528 GDGKPSWSNGSGSDPASWKASDGSGSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGGWN 1587

Query: 696  --NDSG-----SWGPGRG-NFSLVDSRDNRDNW----ANEEKKGWSSWSNDEAGKASNND 553
              NDSG     SW  G G +     S DN+ +W    +  EK    SWS   AG  S  D
Sbjct: 1588 NRNDSGDGKPPSWKNGSGSDAGGWKSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSKTD 1645

Query: 552  ---QEENNWGRTKDPGSSSHSV-----ADKWSTGTGDVSKAAETWSNIEF---------- 427
                E   W +    GSS+++      A KWST        + +W++ +           
Sbjct: 1646 GHVSEAGGWNK----GSSTNAAGGDASASKWSTQENTSGNLSSSWNSSQSTASGLEKSKE 1701

Query: 426  ---AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
               A  +G    +W KA+ SW   ++  G KGGW
Sbjct: 1702 ACGATESGGPADAWGKASSSWGKGSDGAG-KGGW 1734


>ref|XP_019198595.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X6 [Ipomoea
            nil]
          Length = 1690

 Score =  110 bits (275), Expect = 7e-21
 Identities = 169/756 (22%), Positives = 246/756 (32%), Gaps = 93/756 (12%)
 Frame = -3

Query: 2322 NWNKSSYFPDGTWSNNHDQGQTATWERG--WQRNDDG-----------RDPGHHENNWNG 2182
            +WNK    P      N D G     E G  W + D G             PG  E +W  
Sbjct: 1021 SWNKQGGGPSSGQQANKDGGSWNKQEGGSSWGKQDGGSWNKKEDKSSWNKPGG-ETSWGQ 1079

Query: 2181 QKNFDGERQSSWVGGRGDHRVGGSVGLDDG-DEEGKWISXXXXXXXXXXXACYGQSGGTR 2005
            Q + DG   S   GG      GG  G  DG D++G W                G+ GG  
Sbjct: 1080 QGDKDGGSWSKQEGGSSWK--GGEFGNKDGSDQQGSWGRESTFDGGRGSGGRRGRGGGRG 1137

Query: 2004 DDSFNQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQE 1825
             D+F + R   +     ++S+W      G  G  N     +   S+   + SSW  +   
Sbjct: 1138 RDNFGRGRGRGRSFDRGESSSW------GKEGEDNNGSGFAGGSSWKSSQESSWGKVTSS 1191

Query: 1824 TDTRTDTK-------FVDGGSNWEKEAR------TPKDSN----SDWERLQTCKNSE--- 1705
            T  +TD         F  G ++W+          T  D N    S W   Q+ K      
Sbjct: 1192 TSWKTDQSEKQEGSGFAGGQTSWKSSQESSWGKVTSNDENNKASSGWGSTQSEKTESNKA 1251

Query: 1704 -----WNNDGERGTES------SGWQQSSFKDTSREKTVDGGWDKPRVDEPRNILKAAAE 1558
                 W ++    TES      SGW  +  + T R+   +GGW+  +           ++
Sbjct: 1252 GSSLGWGSNQSEKTESNKAGSNSGWGSNQSEKTERD---EGGWNAAKPS-------GESQ 1301

Query: 1557 TCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWDN-KGKGTIADEDS-WGKANN 1384
            + SW               N+ ++  D +  S   AD W   KG G+  ++ S W K ++
Sbjct: 1302 SSSW---------------NRKASTNDEKNTSG--ADGWSTGKGSGSETNQSSGWNKKSS 1344

Query: 1383 SQERKFDVDDNWAGNSNQNEERSSLGCGNQSSCWDAATKSLHQVDEWGTAKDSFAGKSDQ 1204
                  D   +W GN+ Q+ + S+   GNQSS W                          
Sbjct: 1345 DGGGIGDAVSSW-GNNEQSWKTSNSSAGNQSSGWK------------------------- 1378

Query: 1203 WKGISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXX 1024
                SE   +P AW        S  +NWN    F  +    DG N+              
Sbjct: 1379 ----SEGSQDPNAW--------SSKSNWNSGSGFAGDEQQPDGSNERGRGGWRGGRGGSD 1426

Query: 1023 XXXXXXXXXXXXXXXXXXXRPMDGA--------RRCSWGSGRGRNDETGGDRQSKWNSQX 868
                                   G         R    G GRGR D++G     +WN++ 
Sbjct: 1427 RGGFRGRGRSDRGGFQGRGGSDRGGFRGRGGFDRGGFGGRGRGRRDQSG-----EWNNRN 1481

Query: 867  XXXXXXXXXXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTS--- 697
                                  +D S                      +K DG  +    
Sbjct: 1482 DFGDGKPSWSNGSGSDPASWKASDGSGSWNEGGSGKGQWQSWSAGGSTSKADGHSSEAGG 1541

Query: 696  ----NDSG-----SWGPGRG-NFSLVDSRDNRDNW----ANEEKKGWSSWSNDEAGKASN 559
                NDSG     SW  G G +     S DN+ +W    +  EK    SWS   AG  S 
Sbjct: 1542 WNNRNDSGDGKPPSWKNGSGSDAGGWKSSDNKGSWGGSESGSEKGQGQSWS--AAGSTSK 1599

Query: 558  ND---QEENNWGRTKDPGSSSHSV-----ADKWSTGTGDVSKAAETWSNIEF-------- 427
             D    E   W +    GSS+++      A KWST        + +W++ +         
Sbjct: 1600 TDGHVSEAGGWNK----GSSTNAAGGDASASKWSTQENTSGNLSSSWNSSQSTASGLEKS 1655

Query: 426  -----AQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
                 A  +G    +W KA+ SW   ++  G KGGW
Sbjct: 1656 KEACGATESGGPADAWGKASSSWGKGSDGAG-KGGW 1690


>ref|XP_002311988.1| KOW domain-containing transcription factor family protein [Populus
            trichocarpa]
 gb|PNT22445.1| hypothetical protein POPTR_008G032800v3 [Populus trichocarpa]
          Length = 1853

 Score =  108 bits (270), Expect = 3e-20
 Identities = 165/764 (21%), Positives = 254/764 (33%), Gaps = 120/764 (15%)
 Frame = -3

Query: 2265 GQTATWERG-------WQRNDDGRDPGHHENNWNGQKNFDGER-------QSSWVGGRGD 2128
            GQT++W  G        + N DG    +  ++WN  K F  +R       +SSW  G+ +
Sbjct: 969  GQTSSWGNGKIFSEDATEWNKDGSSDQNQTDSWNKPKAFGSDRGSWNKQGESSW--GKQE 1026

Query: 2127 HRVGGSVGLDDGDEE-GKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIRNWDKGHCATQ 1951
                G+    DGD+E G W                G   G RD  F + R+   G    Q
Sbjct: 1027 GGSWGNGNRPDGDQEFGGWNKTSDGGHGSGGSRGRGGGRGGRDQ-FGRGRSSGDG----Q 1081

Query: 1950 TSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVDGGSNWEK 1771
            +S W   + + TG   +Q     K+K F+G R   W ++    D+         GS W K
Sbjct: 1082 SSGWKGGENNSTGN--DQGGGWGKSKGFEGSREGGWKSVSSGGDS---------GSGWNK 1130

Query: 1770 EARTPKDSNSDWERLQTCKNSEWNNDGERG------------------------------ 1681
                 K++    ++  +   S WNND  +G                              
Sbjct: 1131 SGEADKETGGSVDKWNSGNKSSWNNDQTQGHNGSKGFVSNLSSEGQNDGASWRAPKSSGM 1190

Query: 1680 TESSGWQQSSFKDTSREKTVDGG--WDKPRVDEPRN-------ILKAAAETCSWXXXXXX 1528
              SSGW  +S  D     +  GG  W+  +     N       +  A  +   W      
Sbjct: 1191 NSSSGWNSASAVDEVPGGSWGGGSKWNSGKASTGDNTTGWKTGMSGAGTQPSDWGAPKAS 1250

Query: 1527 XXXXXRVSLNKSSNWTDSQT--ISSNEADAWDNKG----KGTIADED---------SWGK 1393
                     ++SS+W D++T  + +N++  W +K     K    ++D         SWGK
Sbjct: 1251 KG-------DQSSSW-DNKTGHVDANQSSGWGSKSCWNQKSPELEKDSEIDGNRNSSWGK 1302

Query: 1392 ANNSQERKFDV----DDNWAGNSNQNEERSSLGCGNQ------SSCWDAATKSLHQVDEW 1243
             +N +    DV    D +W    N N E S+   GNQ       S W++ +K  +Q   W
Sbjct: 1303 KSNLKSESSDVGGNADSDWGKKGNWNSE-SNNADGNQDSGWANKSNWNSGSKDANQGSSW 1361

Query: 1242 GTAKDSFAGKSD-----QWKGISEMDTEPGAWNQ------------TQFSNQSGNNNWNR 1114
                +  +G SD      W   S   +  G  NQ                N++G  NW R
Sbjct: 1362 AKKSNWNSGSSDVNQESGWDKKSSWSSRYGDGNQDASVACDDENQTETCGNRAGGGNW-R 1420

Query: 1113 PKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDGA----- 949
                G +  +R G+                                    P  G      
Sbjct: 1421 GGFGGRDGSDRGGFRGRGDRGGFGGRNGSDRGGFGGRGRSDRGGFGGRGGPDRGGFRGRG 1480

Query: 948  -RRCSWGSGRGRNDETGG--------DRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQND 796
             R    G GRGR D+ GG        D+   W +                   R      
Sbjct: 1481 DRGGFGGRGRGRRDQNGGWSDNNSAEDKTFDWKNGANNSSGGWKNNGGGSSWNRGGGDRG 1540

Query: 795  NSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDS------GSWGPGR-GNFSLVDSRD 637
            +                   S+ G+ ++ +RT+ DS      G W  G   N  +   + 
Sbjct: 1541 HQQNSWNSGSGGTSNEGGGWSSQGSGWNQSRTAKDSGGSDLAGGWNKGTCANSDVAWGQG 1600

Query: 636  NRDNWANEEKKGWSSWSNDEAGKASNNDQEENNWGRTKDPGSSSHSVADKWSTGTG--DV 463
            N    +N   +GWS  S +  G       E+   G  K P  ++   A  W  G      
Sbjct: 1601 NSWKSSNPSGEGWSKSSKEIKG------SEDQGGGWNKGPSGANSDAA--WGQGNSWKSS 1652

Query: 462  SKAAETWS-NIEFAQAAGDQGYSWDKAAGSWNPNNETNGSKGGW 334
            + + E WS + +  + + DQG  W+K  GS       +   GGW
Sbjct: 1653 NPSGEGWSQSSKEIKGSEDQGGGWNKGPGS-------SAQGGGW 1689



 Score = 97.1 bits (240), Expect = 1e-16
 Identities = 133/587 (22%), Positives = 195/587 (33%), Gaps = 34/587 (5%)
 Frame = -3

Query: 1992 NQIRNWDKGHCATQTSNWTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTR 1813
            NQ+ +W K + A +  +W   ++SGTG    +D + +K         + WN         
Sbjct: 856  NQVGSWGKCNDAVEAGSWEKNKSSGTG----EDCLSNKT--------TGWN--------- 894

Query: 1812 TDTKFVDGGSNWEKEARTPKD---SNSDWERLQTCKNSEWNNDGERGTESSGWQQSSFKD 1642
               K  DGG  W K A         N  W +    +  E  N  E+ TE  GW ++    
Sbjct: 895  -QQKSQDGGDPWGKAAEEQDKGAAQNDSWGK--AAEKRESKNGAEKPTE--GWGKAGRSS 949

Query: 1641 TSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTIS 1462
            T  E     GW K + D       +A +T SW           ++    ++ W    +  
Sbjct: 950  TQPEADKGSGWMKDKAD-------SAGQTSSW--------GNGKIFSEDATEWNKDGSSD 994

Query: 1461 SNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAGNSNQNEERSSLGCGNQSSCW 1282
             N+ D+W NK K   +D  SW K   S   K +   +W GN N+ +     G  N++S  
Sbjct: 995  QNQTDSW-NKPKAFGSDRGSWNKQGESSWGKQE-GGSW-GNGNRPDGDQEFGGWNKTSDG 1051

Query: 1281 DAATKSLH-------QVDEWGTAKDSFAGKSDQWKGISEMDT---EPGAWNQTQFSNQSG 1132
               +             D++G  + S  G+S  WKG     T   + G W +++    S 
Sbjct: 1052 GHGSGGSRGRGGGRGGRDQFGRGRSSGDGQSSGWKGGENNSTGNDQGGGWGKSKGFEGSR 1111

Query: 1131 NNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMDG 952
               W   KS     D+  GWNK+                                    G
Sbjct: 1112 EGGW---KSVSSGGDSGSGWNKSGEADKE-----------------------------TG 1139

Query: 951  ARRCSWGSGR---GRNDETGGDRQSKWNSQXXXXXXXXXXXXXXXXXXRERNQNDNSLXX 781
                 W SG      ND+T G   SK                          QND +   
Sbjct: 1140 GSVDKWNSGNKSSWNNDQTQGHNGSK----------------GFVSNLSSEGQNDGA--- 1180

Query: 780  XXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSWGPG-RGNFSLVDSRDNRDNWANEEKK 604
                           S+ G     A      GSWG G + N     + DN   W      
Sbjct: 1181 ----SWRAPKSSGMNSSSGWNSASAVDEVPGGSWGGGSKWNSGKASTGDNTTGWKTGMSG 1236

Query: 603  GWSSWSNDEAGKASNNDQE---ENNWGRTKDPGSSSHSVADKWSTGTGDVSKAAE----- 448
              +  S+  A KAS  DQ    +N  G      SS       W+  + ++ K +E     
Sbjct: 1237 AGTQPSDWGAPKASKGDQSSSWDNKTGHVDANQSSGWGSKSCWNQKSPELEKDSEIDGNR 1296

Query: 447  --TW---SNI--EFAQAAGDQGYSWDKAAGSWN--PNNETNGSKGGW 334
              +W   SN+  E +   G+    W K  G+WN   NN       GW
Sbjct: 1297 NSSWGKKSNLKSESSDVGGNADSDWGK-KGNWNSESNNADGNQDSGW 1342



 Score = 74.7 bits (182), Expect = 7e-10
 Identities = 125/604 (20%), Positives = 194/604 (32%), Gaps = 56/604 (9%)
 Frame = -3

Query: 1977 WDKGHCATQTSNWTD------------KQTSGTGGPPNQDDI-----RSKNKSFDGHRLS 1849
            W+ G  +T+ ++W+               +S     PN+DD      ++K  S  G   +
Sbjct: 715  WNVGGLSTERTSWSSPGFTLQPETNPVNPSSSVDNEPNKDDTWGSQAKAKQTSSRGAAAA 774

Query: 1848 -SWNNLPQETDTRTDTKFVDGGSNWEKE--ARTPKDSNSDWER--LQTCKNS------EW 1702
             SWN       + +      G +    E    + + S  +W +  L+  K+S       W
Sbjct: 775  DSWNKAASNIGSSSGASVGWGKATLSNEDLPGSSRGSGDNWGQGILRDEKSSFDAAASAW 834

Query: 1701 NNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPRVDEPRNILKAAAETCSWXXXXXXXX 1522
                ++G    G Q  S+ + +  K   G W K            A E  SW        
Sbjct: 835  ----DKGKTVIGNQNGSWGEAATGKNQVGSWGK---------CNDAVEAGSWEK------ 875

Query: 1521 XXXRVSLNKSSNWTDSQTISSNEADAWDNKGKGTIADEDSWGKANNSQERKFDVDDNWAG 1342
                   NKSS     +   SN+   W+ +        D WGKA   Q++    +D+W  
Sbjct: 876  -------NKSSG--TGEDCLSNKTTGWNQQKSQD--GGDPWGKAAEEQDKGAAQNDSWGK 924

Query: 1341 NSNQNEERSSLGCGNQSSCWDAATKSLHQVDE-----WGTAKDSFAGKSDQWKGISEMDT 1177
             + + E ++  G    +  W  A +S  Q +      W   K   AG++  W        
Sbjct: 925  AAEKRESKN--GAEKPTEGWGKAGRSSTQPEADKGSGWMKDKADSAGQTSSWGNGKIFSE 982

Query: 1176 EPGAWNQTQFSNQSGNNNWNRPKSFGEEADNRDGWNKAXXXXXXXXXXXXXXXXXXXXXX 997
            +   WN+   S+Q+  ++WN+PK+FG +   R  WNK                       
Sbjct: 983  DATEWNKDGSSDQNQTDSWNKPKAFGSD---RGSWNKQGESSWGKQEGGSWGNGNRPDGD 1039

Query: 996  XXXXXXXXXXRPMDGARRC-SWGSGRGRNDETG-----GDRQS---KWNSQXXXXXXXXX 844
                          G+      G GRG  D+ G     GD QS   K             
Sbjct: 1040 QEFGGWNKTSDGGHGSGGSRGRGGGRGGRDQFGRGRSSGDGQSSGWKGGENNSTGNDQGG 1099

Query: 843  XXXXXXXXXRERNQNDNSLXXXXXXXXXXXXXXXXGSNYGNKFDGARTSNDSGSW----- 679
                       R     S+                    G   D   + N S SW     
Sbjct: 1100 GWGKSKGFEGSREGGWKSVSSGGDSGSGWNKSGEADKETGGSVDKWNSGNKS-SWNNDQT 1158

Query: 678  ---GPGRGNFSLVDSRDNRD--NWANEEKKGWSSWSNDEAGKASNNDQEENNWGRTKDPG 514
                  +G  S + S    D  +W   +  G +S S   +  A  ++    +WG      
Sbjct: 1159 QGHNGSKGFVSNLSSEGQNDGASWRAPKSSGMNSSSGWNSASAV-DEVPGGSWGGGSKWN 1217

Query: 513  SSSHSVADK---WSTGTGDVSKAAETWSNIEFAQAAGDQGYSWDKAAGSWNPNNETN-GS 346
            S   S  D    W TG          W   + ++  GDQ  SWD   G  + N  +  GS
Sbjct: 1218 SGKASTGDNTTGWKTGMSGAGTQPSDWGAPKASK--GDQSSSWDNKTGHVDANQSSGWGS 1275

Query: 345  KGGW 334
            K  W
Sbjct: 1276 KSCW 1279



 Score = 72.4 bits (176), Expect = 4e-09
 Identities = 92/427 (21%), Positives = 146/427 (34%), Gaps = 19/427 (4%)
 Frame = -3

Query: 2295 DGTWS-NNHDQGQTATWERGWQRNDDGRDPGHHENNWNGQKNFDGERQSSWVGGRGDHRV 2119
            +G WS NN  + +T  W+ G   +  G       ++WN      G +Q+SW  G G    
Sbjct: 1496 NGGWSDNNSAEDKTFDWKNGANNSSGGWKNNGGGSSWNRGGGDRGHQQNSWNSGSG---- 1551

Query: 2118 GGSVGLDDGDEEGKWISXXXXXXXXXXXACYGQSGGTRDDSFNQIR-NWDKGHCATQTSN 1942
                     +E G W S             + QS   +D   + +   W+KG CA     
Sbjct: 1552 ------GTSNEGGGWSSQGSG---------WNQSRTAKDSGGSDLAGGWNKGTCANSDVA 1596

Query: 1941 WTDKQTSGTGGPPNQDDIRSKNKSFDGHRLSSWNNLPQETDTRTDTKFVDGGSNWEKEAR 1762
            W      G G     +  +S N S +G     W+   +E     D      G  W K   
Sbjct: 1597 W------GQG-----NSWKSSNPSGEG-----WSKSSKEIKGSEDQ-----GGGWNK--- 1632

Query: 1761 TPKDSNSD--WERLQTCKNSEWNNDGERGTESSGWQQSSFKDTSREKTVDGGWDKPRVDE 1588
             P  +NSD  W +  + K+S  N  GE      GW QSS K+    +   GGW+K     
Sbjct: 1633 GPSGANSDAAWGQGNSWKSS--NPSGE------GWSQSS-KEIKGSEDQGGGWNKGP--- 1680

Query: 1587 PRNILKAAAETCSWXXXXXXXXXXXRVSLNKSSNWTDSQTISSNEADAWD---------N 1435
                  ++A+   W                 +  W  S      ++  W          N
Sbjct: 1681 -----GSSAQGGGWGTKGAGSGEAGMTG-GDAMTWNQSGASGRGQSSGWSGSTEGKEGTN 1734

Query: 1434 KGK------GTIADEDSWGKANNSQERKFDVDDNWAGNSNQNEERSSLGCGNQSSCWDAA 1273
             G+      G  +   SW +++   E   D    W    + N +    G           
Sbjct: 1735 TGRELTDPCGKASSTSSWNQSSKDVEGSDDQGSGWNKGPSSNAQAGGWGDKGAGLGDGGD 1794

Query: 1272 TKSLHQVDEWGTAKDSFAGKSDQWKGISEMDTEPGAWNQTQFSNQSGNNNWNRPKSFGEE 1093
             K+ +Q   +G  + S  G+S + KG +E       W      N++  ++W      G +
Sbjct: 1795 AKTWNQSSAFGGGQSSGWGQSSEVKGANETGKPADPW-----GNKASTSSWGNE---GND 1846

Query: 1092 ADNRDGW 1072
              ++ GW
Sbjct: 1847 GSSKGGW 1853