BLASTX nr result

ID: Cheilocostus21_contig00020604 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00020604
         (894 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_018676238.1| PREDICTED: double-stranded RNA-binding prote...    69   2e-09
ref|XP_009384665.1| PREDICTED: double-stranded RNA-binding prote...    69   2e-09
ref|XP_009381975.1| PREDICTED: double-stranded RNA-binding prote...    60   3e-06

>ref|XP_018676238.1| PREDICTED: double-stranded RNA-binding protein 6-like isoform X2
           [Musa acuminata subsp. malaccensis]
          Length = 391

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = +2

Query: 8   PLSSVQKRESSILPKDCPPVKPLIQMEDAADDQEAKDLAESESTALESLKQLDI 169
           PLSS+Q  E SI    CP VKPL Q+ED  D ++AKDL ESESTA+ESLK+LDI
Sbjct: 337 PLSSIQTHEPSISSLACPAVKPLSQIEDFVDGRDAKDLEESESTAMESLKRLDI 390


>ref|XP_009384665.1| PREDICTED: double-stranded RNA-binding protein 6-like isoform X1
           [Musa acuminata subsp. malaccensis]
 ref|XP_018676237.1| PREDICTED: double-stranded RNA-binding protein 6-like isoform X1
           [Musa acuminata subsp. malaccensis]
          Length = 467

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = +2

Query: 8   PLSSVQKRESSILPKDCPPVKPLIQMEDAADDQEAKDLAESESTALESLKQLDI 169
           PLSS+Q  E SI    CP VKPL Q+ED  D ++AKDL ESESTA+ESLK+LDI
Sbjct: 413 PLSSIQTHEPSISSLACPAVKPLSQIEDFVDGRDAKDLEESESTAMESLKRLDI 466


>ref|XP_009381975.1| PREDICTED: double-stranded RNA-binding protein 6 [Musa acuminata
           subsp. malaccensis]
          Length = 470

 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = +2

Query: 2   EAPLSSVQKRESSILPKDCPPVKPLIQMEDAADDQEAKDLAESESTALESLKQLDI 169
           E PL SV+  E SI    CPP+ PLI + D  D  +AKDL ESE TA+ESLK+L+I
Sbjct: 415 EQPLPSVKTLEPSIKLMACPPMLPLIGLMDTVDGDDAKDLEESECTAMESLKRLEI 470


Top