BLASTX nr result

ID: Cheilocostus21_contig00019682 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00019682
         (635 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009405492.1| PREDICTED: SWI/SNF complex component SNF12 h...    81   4e-14
ref|XP_009415926.1| PREDICTED: SWI/SNF complex component SNF12 h...    78   5e-13
ref|XP_010929776.1| PREDICTED: SWI/SNF complex component SNF12 h...    57   4e-06
ref|XP_008788860.1| PREDICTED: SWI/SNF complex component SNF12 h...    57   8e-06

>ref|XP_009405492.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Musa acuminata
           subsp. malaccensis]
 ref|XP_009405493.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Musa acuminata
           subsp. malaccensis]
          Length = 517

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 46/79 (58%), Positives = 48/79 (60%)
 Frame = -3

Query: 351 MASNSNNQPRAVGGLPSLISPGMVSPASAXXXXXXXXXXXXXXXXXXXXXXSQTQSQGQP 172
           MASNSNNQPRAVGG PSL + GM  PASA                      SQTQSQ QP
Sbjct: 1   MASNSNNQPRAVGGSPSLANSGMGLPASANPPSHLRPPPAPGPSPFQGLFHSQTQSQAQP 60

Query: 171 QVHSPFQIQMGAQSQLGHL 115
           QVHSPFQI MG+QS LG L
Sbjct: 61  QVHSPFQIHMGSQSHLGPL 79


>ref|XP_009415926.1| PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Musa
           acuminata subsp. malaccensis]
 ref|XP_009415927.1| PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Musa
           acuminata subsp. malaccensis]
          Length = 519

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 43/79 (54%), Positives = 47/79 (59%)
 Frame = -3

Query: 351 MASNSNNQPRAVGGLPSLISPGMVSPASAXXXXXXXXXXXXXXXXXXXXXXSQTQSQGQP 172
           MASN+NNQPR VGG P L +PGM SPASA                      SQ   Q QP
Sbjct: 1   MASNNNNQPRGVGGPPPLGNPGMASPASANQPPHLRPPPPPGSSPFQGLFHSQAHPQAQP 60

Query: 171 QVHSPFQIQMGAQSQLGHL 115
           QVHSPFQIQMG+QSQ+G L
Sbjct: 61  QVHSPFQIQMGSQSQVGLL 79


>ref|XP_010929776.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Elaeis
           guineensis]
          Length = 521

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 33/75 (44%), Positives = 40/75 (53%)
 Frame = -3

Query: 351 MASNSNNQPRAVGGLPSLISPGMVSPASAXXXXXXXXXXXXXXXXXXXXXXSQTQSQGQP 172
           MASNSNNQ RA+GG P L +PGM SPA+                        QT  Q   
Sbjct: 1   MASNSNNQSRAIGGPPPLGNPGMASPAANQPSHLRPPSLPQASGGSPFQGLFQTPPQS-- 58

Query: 171 QVHSPFQIQMGAQSQ 127
           QVHSPFQ+Q+ +Q+Q
Sbjct: 59  QVHSPFQVQLSSQTQ 73


>ref|XP_008788860.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Phoenix
           dactylifera]
 ref|XP_008788861.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Phoenix
           dactylifera]
          Length = 521

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 33/75 (44%), Positives = 40/75 (53%)
 Frame = -3

Query: 351 MASNSNNQPRAVGGLPSLISPGMVSPASAXXXXXXXXXXXXXXXXXXXXXXSQTQSQGQP 172
           MASNSNNQ RA+GG   L +PGM SPA+                        QT  Q   
Sbjct: 1   MASNSNNQSRAIGGPSPLGNPGMASPATNQPSHLRPPSLPQASGGSPFQGLFQTPPQS-- 58

Query: 171 QVHSPFQIQMGAQSQ 127
           QVHSPFQ+Q+G+Q+Q
Sbjct: 59  QVHSPFQVQLGSQAQ 73


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