BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00019412
         (1366 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   347   e-114
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...   348   e-108
gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japo...   351   e-107
dbj|BAB03249.1| polyprotein [Oryza sativa]                            351   e-106
gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subc...   350   e-105
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc...   351   e-105
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   347   e-105
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     350   e-105
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   351   e-105
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   351   e-105
gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group...   345   e-105
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   348   e-105
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]        348   e-105
gb|ABA96959.2| retrotransposon protein, putative, Ty1-copia subc...   341   e-105
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...   349   e-105
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   348   e-104
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   348   e-104
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        348   e-104
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         348   e-104
gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subc...   347   e-104

>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 304

 Score =  347 bits (890), Expect = e-114
 Identities = 169/299 (56%), Positives = 227/299 (75%)
 Frame = +3

Query: 3   DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
           DDILIF +NL +I D+K +LS +F+MKD+G  D+ILG+K++++ + I L+Q+HY++K+L 
Sbjct: 6   DDILIFGSNLHVINDVKSFLSSNFEMKDLGLVDVILGIKLIKNHDGIVLTQSHYIEKILK 65

Query: 183 KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
           KF +    P+STPFDPSI + KN G+SV    YS+ IGSLL L+N +RPDIAYAV RL R
Sbjct: 66  KFNYFDVKPVSTPFDPSIKLKKNIGESVSPLKYSQIIGSLLHLSNFSRPDIAYAVGRLGR 125

Query: 363 YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
           YT NP   HW AL+R+FRYLKGT  Y + ++ YP V+EGFCDANWISDS++ KSTSGYVF
Sbjct: 126 YTHNPDHSHWLALERLFRYLKGTVNYGIHYACYPVVIEGFCDANWISDSDETKSTSGYVF 185

Query: 543 TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
           TL GGA++W+S KQTII+RSTMEAE++ALD A SEAE++KNL   +P+     PPIS++C
Sbjct: 186 TLAGGAVAWKSAKQTIISRSTMEAEIIALDTASSEAEFLKNLLYDLPLLNKPIPPISMHC 245

Query: 723 DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
           D+  AII    K  N K  RH++IR K IR L +H V+S+ ++++ +NLAD LTKGL +
Sbjct: 246 DSQVAIIKVTSKNFNEK-RRHLRIRHKFIRNLITHGVISVDFIRSENNLADPLTKGLTR 303


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score =  348 bits (893), Expect = e-108
 Identities = 169/314 (53%), Positives = 229/314 (72%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 490  DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 549

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DP++ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 550  SRFGYSDCKPAPTPYDPNVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 609

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD+N++K+ SGY 
Sbjct: 610  RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDANEIKAISGYA 669

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 670  FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 729

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 730  CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 789

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 790  NVIDSASREMGLIP 803


>gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japonica Group]
          Length = 1028

 Score =  351 bits (901), Expect = e-107
 Identities = 171/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 714  DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 773

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 774  SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 833

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 834  RFVSNPEDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 893

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 894  FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 953

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 954  CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSEVIALDYVQTARNLADQFTKGLPR 1013

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1014 NVIDSASREMGLIP 1027


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  351 bits (901), Expect = e-106
 Identities = 171/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 954  DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1013

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1014 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1073

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1074 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1133

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1134 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1193

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1194 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1253

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1254 NVIDSASREMGLIP 1267


>gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1286

 Score =  350 bits (899), Expect = e-105
 Identities = 170/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS +F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 972  DDILIFGTSLNVIEEVKDYLSKNFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1031

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1032 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1091

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGY 
Sbjct: 1092 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYA 1151

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1152 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1211

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1212 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1271

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1272 NVIDSASREMGLIP 1285


>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1357

 Score =  351 bits (901), Expect = e-105
 Identities = 171/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 1043 DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1102

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1103 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1162

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1163 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1222

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1223 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1282

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1283 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1342

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1343 NVIDSASREMGLIP 1356


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  347 bits (890), Expect = e-105
 Identities = 167/313 (53%), Positives = 232/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 782  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 841

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 842  RFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 901

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 902  FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 961

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 962  TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1021

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1022 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1081

Query: 903  KVEAASRGMGISP 941
             +  AS+ MG+ P
Sbjct: 1082 VINNASKEMGLRP 1094


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  350 bits (897), Expect = e-105
 Identities = 170/314 (54%), Positives = 230/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 954  DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1013

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1014 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1073

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1074 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1133

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTME EL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1134 FTLGGGAVSWKSCKQTILTRSTMETELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1193

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1194 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVITLDYVQTARNLADQFTKGLPR 1253

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1254 NVIDSASREMGLIP 1267


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  351 bits (901), Expect = e-105
 Identities = 171/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 1080 DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1139

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1140 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1199

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1200 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1259

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1260 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMN 1319

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1320 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1379

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1380 NVIDSASREMGLIP 1393


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  351 bits (901), Expect = e-105
 Identities = 171/314 (54%), Positives = 231/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 1099 DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1158

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1159 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1218

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1219 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1278

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1279 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMN 1338

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1339 CDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1398

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1399 NVIDSASREMGLIP 1412


>gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAV44157.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1046

 Score =  345 bits (884), Expect = e-105
 Identities = 165/313 (52%), Positives = 231/313 (73%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL MK++R +N I+L Q+HYV+K+L+
Sbjct: 733  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNMKLIRSENGITLLQSHYVEKILN 792

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++A+S+LSR
Sbjct: 793  RFGYIDNKPSPTPYDPSLLLRKNKRIARNQLQYSQIIGSLMYLASATRPDISFAMSKLSR 852

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +    +SGYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 853  FTSNPGDDHWRALERVMRYLKGTMELGFHYSGYPTVLEGYSDSNWISDMDEIKATSGYVF 912

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S  QTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 913  TLGGGAVSWRSCNQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAILMNC 972

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K + KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 973  DNQTVILKVNSSKDNMKSSRHVKRQVKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1032

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1033 VIDNASKEMGLRP 1045


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  348 bits (894), Expect = e-105
 Identities = 167/313 (53%), Positives = 233/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 989  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 1048

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 1049 RFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1288

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1289 VIDNASKEMGLRP 1301


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  348 bits (894), Expect = e-105
 Identities = 170/314 (54%), Positives = 230/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 1007 DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1066

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1067 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1126

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1127 RFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1186

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGG +SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1187 FTLGGGDVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1246

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 1247 CDNQTMIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 1306

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1307 NVIDSASREMGLIP 1320


>gb|ABA96959.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 920

 Score =  341 bits (875), Expect = e-105
 Identities = 166/314 (52%), Positives = 227/314 (72%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 584  DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 643

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TR DI++AVS+LS
Sbjct: 644  SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRTDISFAVSKLS 703

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV  YLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TS YV
Sbjct: 704  RFVSNPGDDHWQALERVMHYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSEYV 763

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++     +P+     P I +N
Sbjct: 764  FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLREFLMDLPVVEKPVPAILMN 823

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRH+K R KS+R   +  V++L YV+T  NLAD  TKGL +
Sbjct: 824  CDNQTVIIKVNSSKDNMKSSRHVKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPR 883

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 884  NVIDSASREMGLIP 897


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score =  349 bits (896), Expect = e-105
 Identities = 171/314 (54%), Positives = 230/314 (73%), Gaps = 1/314 (0%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILR-DQNSISLSQTHYVDKLL 179
            DDILIF  +L +I+++K+YLS  F+MKD+GEAD+IL +K+ R D+  I+L Q+HYVDK+L
Sbjct: 1094 DDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVL 1153

Query: 180  DKFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLS 359
             +F ++ C P  TP+DPS+ + KN+  + DQ  YS+ IGSL++LA+ TRPDI++AVS+LS
Sbjct: 1154 SRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLS 1213

Query: 360  RYTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYV 539
            R+ SNP D HW AL+RV RYLKGT  Y + ++GYP VLEG+ D+NWISD++++K+TSGYV
Sbjct: 1214 RFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYV 1273

Query: 540  FTLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISIN 719
            FTLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW++ L   +P+     P I +N
Sbjct: 1274 FTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMN 1333

Query: 720  CDNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQ 899
            CDN   II       N K SRHIK R KS+R   +  V++L YV+T  NLAD  TKGL  
Sbjct: 1334 CDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPC 1393

Query: 900  TKVEAASRGMGISP 941
              +++ASR MG+ P
Sbjct: 1394 NVIDSASREMGLIP 1407


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  348 bits (892), Expect = e-104
 Identities = 167/313 (53%), Positives = 233/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 989  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 1048

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 1049 RFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1288

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1289 VIDNASKEMGLRP 1301


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  348 bits (892), Expect = e-104
 Identities = 166/313 (53%), Positives = 233/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  N+E+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 989  DDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 1048

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 1049 RFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1229 DNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1288

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1289 VIDNASKEMGLRP 1301


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  348 bits (892), Expect = e-104
 Identities = 167/313 (53%), Positives = 233/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 961  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 1020

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 1021 RFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1080

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1081 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1140

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 1141 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1200

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1201 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1260

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1261 VIDNASKEMGLRP 1273


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  348 bits (892), Expect = e-104
 Identities = 167/313 (53%), Positives = 233/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 989  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILN 1048

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 1049 RFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L   +P+     P I +NC
Sbjct: 1169 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNC 1228

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  TKGL++ 
Sbjct: 1229 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRN 1288

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1289 VIDNASKEMGLRP 1301


>gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1235

 Score =  347 bits (889), Expect = e-104
 Identities = 166/313 (53%), Positives = 234/313 (74%)
 Frame = +3

Query: 3    DDILIFSNNLEMIKDIKEYLSLHFDMKDIGEADIILGMKILRDQNSISLSQTHYVDKLLD 182
            DDILIF  NLE+I ++K +LS +FDMKD+G AD+IL +K++R +N I+L Q+HYV+K+L+
Sbjct: 922  DDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILN 981

Query: 183  KFKFNSCSPLSTPFDPSIHIFKNQGKSVDQELYSKAIGSLLFLANRTRPDIAYAVSRLSR 362
            +F +    P  TP+DPS+ + KN+  + +Q  YS+ IGSL++LA+ TRPDI++AVS+LSR
Sbjct: 982  RFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1041

Query: 363  YTSNPSDLHWTALKRVFRYLKGTSKYTLTFSGYPSVLEGFCDANWISDSNDVKSTSGYVF 542
            +TSNP D HW AL+RV RYLKGT +  L ++GYP+VLEG+ D+NWISD +++K+TSGYVF
Sbjct: 1042 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1101

Query: 543  TLGGGAISWQSTKQTIIARSTMEAELVALDLACSEAEWIKNLCASIPMAVSINPPISINC 722
            TLGGGA+SW+S KQTI+ RSTMEAEL ALD A  EAEW+++L  ++P+     P I +NC
Sbjct: 1102 TLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMNLPVVEKPVPAILMNC 1161

Query: 723  DNNAAIIFCKKKLVNTKLSRHIKIRQKSIRWLSSHNVVSLSYVKTTDNLADCLTKGLNQT 902
            DN   I+       N K SRH+K R KS+R L +  V++L Y++T  NLAD  T+GL++ 
Sbjct: 1162 DNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTEGLSRN 1221

Query: 903  KVEAASRGMGISP 941
             ++ AS+ MG+ P
Sbjct: 1222 VIDNASKEMGLRP 1234