BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00017808
         (2021 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009141853.1| DNA-directed RNA polymerase beta' chain (chl...    64   9e-07
ref|YP_009247823.1| RNA polymerase beta' subunit (plastid) [Piga...    62   3e-06
ref|YP_007475865.1| RNA polymerase beta' subunit [Calamus caryot...    62   5e-06
gb|AKF01364.1| RNA polymerase beta' subunit (chloroplast) [Drymo...    61   8e-06

>ref|YP_009141853.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Xerophyllum
            tenax]
 gb|AIW56407.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Xerophyllum
            tenax]
          Length = 1380

 Score = 64.3 bits (155), Expect = 9e-07
 Identities = 45/94 (47%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
 Frame = -1

Query: 1898 VHTIQVIAEIHAETSTFSF*REGTKTYLF*RIDLE-------YQCQPCT*IYIL*CSSII 1740
            V + QVIAEI AETSTF F  E  + +++   + E       Y     T   +     + 
Sbjct: 413  VESEQVIAEIRAETSTFHF-TERVRKHIYSESEGEMHWSNNVYHAPEYTYGNV---HLLP 468

Query: 1739 KKSYLWILARGPSRSSRVSFSLHKDLDQINVHFF 1638
            K S+LWILA GP RSS VSFSLHKD DQINVH F
Sbjct: 469  KTSHLWILAGGPRRSSIVSFSLHKDQDQINVHSF 502


>ref|YP_009247823.1| RNA polymerase beta' subunit (plastid) [Pigafetta elata]
 gb|AMW65789.1| RNA polymerase beta' subunit (plastid) [Pigafetta elata]
          Length = 1372

 Score = 62.4 bits (150), Expect = 3e-06
 Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
 Frame = -1

Query: 1898 VHTIQVIAEIHAETSTFSF*REGTKTYLF*RIDLEYQCQPCT*IYIL*------CSSIIK 1737
            V + QVIAEI A TSTF F +E  + +++   + E +    T ++            + K
Sbjct: 413  VESEQVIAEIRAGTSTFHF-KEKVRKHIY--SESEGEMHWSTDVHHASEYTHGNVHLLPK 469

Query: 1736 KSYLWILARGPSRSSRVSFSLHKDLDQINVHFFF**ISCLYRSVSTLSM--HRAATS 1572
             S+LWILA GP RSS VSFSLHKD DQ+NVH F    S   R +  LSM  HRA+ S
Sbjct: 470  TSHLWILAGGPCRSSIVSFSLHKDQDQMNVHSF----SFEERYIFDLSMTNHRASGS 522


>ref|YP_007475865.1| RNA polymerase beta' subunit [Calamus caryotoides]
 gb|AGE92930.1| RNA polymerase beta' subunit (plastid) [Calamus caryotoides]
          Length = 1372

 Score = 62.0 bits (149), Expect = 5e-06
 Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
 Frame = -1

Query: 1898 VHTIQVIAEIHAETSTFSF*REGTKTYLF*R--------IDLEYQCQPCT*IYIL*CSSI 1743
            V + QVIAEI A TSTF F +E  + +++           D+ +  +       L    +
Sbjct: 413  VESEQVIAEIRAGTSTFHF-KEKVRKHIYSESKGEMHWSTDVHHASEYTHGNVHL----L 467

Query: 1742 IKKSYLWILARGPSRSSRVSFSLHKDLDQINVHFFF**ISCLYRSVSTLSM--HRAATS 1572
             K S+LWILA GP RSS VSFSLHKD DQ+NVH F    S   R +  LSM  HRA+ S
Sbjct: 468  PKTSHLWILAGGPCRSSIVSFSLHKDQDQVNVHSF----SFEERYIFDLSMTNHRASGS 522


>gb|AKF01364.1| RNA polymerase beta' subunit (chloroplast) [Drymophloeus litigiosus]
          Length = 1371

 Score = 61.2 bits (147), Expect = 8e-06
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
 Frame = -1

Query: 1898 VHTIQVIAEIHAETSTFSF*REGTKTYLF*RIDLEYQCQPCT*IYIL*------CSSIIK 1737
            V + QVIAEI A TSTF F +E  + +++   + E +    T ++            + K
Sbjct: 413  VESEQVIAEIRARTSTFRF-KEKVRKHIY--SESEGEMHWSTDVHHASEYTHGNVHLLPK 469

Query: 1736 KSYLWILARGPSRSSRVSFSLHKDLDQINVHFF 1638
             S+LWILA GP RSS VSFSLHKD DQ+NVH F
Sbjct: 470  TSHLWILAGGPCRSSIVSFSLHKDQDQMNVHSF 502