BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00017261
         (1729 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007761644.1| reverse transcriptase [Rose yellow vein viru...    84   5e-13

>ref|YP_007761644.1| reverse transcriptase [Rose yellow vein virus]
 gb|AFO54491.1| reverse transcriptase [Rose yellow vein virus]
          Length = 819

 Score = 83.6 bits (205), Expect = 5e-13
 Identities = 45/93 (48%), Positives = 63/93 (67%)
 Frame = +3

Query: 3   GV*SDSQQK*STFDKVLRSIVKALKKFRIFLFKPFELMCDNTAVVGFLHKDNIDETRSAK 182
           G  + ++Q  STF K LR+I  AL+KF++FLF+PF L  DN AV+ FL KD ++E RS +
Sbjct: 724 GTWNQTEQNWSTFGKELRAIKLALQKFKLFLFEPFTLYSDNLAVINFLKKD-LNEKRSQR 782

Query: 183 QLHNKQSINSYLDRMKITYISGTKNFLADALSR 281
           ++ +K  I  Y   M + +I GTKN LADAL+R
Sbjct: 783 EIRDKLDILQYQGWMTLKHIPGTKNVLADALTR 815