BLASTX nr result

ID: Cheilocostus21_contig00016329 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00016329
         (636 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020875049.1| peptide chain release factor PrfB1, chloropl...    61   2e-07
gb|ACF83924.1| unknown [Zea mays]                                      57   1e-06
emb|CCQ57726.1| Peptide chain release factor 2; programmed frame...    56   2e-06
dbj|BAW96298.1| peptide chain release factor 2 [Synechococcus sp...    58   2e-06
gb|AMA08031.1| peptide chain release factor 2 [Synechococcus sp....    58   2e-06
gb|ANV89346.1| peptide chain release factor 2 [Synechococcus sp....    58   2e-06
gb|ANV86169.1| peptide chain release factor 2 [Synechococcus sp....    58   2e-06
ref|WP_051352868.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_012305825.1| MULTISPECIES: peptide chain release factor 2...    58   2e-06
ref|WP_072007995.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_071932312.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_071925373.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_071884890.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_065715149.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_099240473.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|WP_096418966.1| peptide chain release factor 2 [Synechococcu...    58   2e-06
ref|XP_019088905.1| PREDICTED: peptide chain release factor PrfB...    58   2e-06
ref|XP_019086070.1| PREDICTED: peptide chain release factor PrfB...    58   2e-06
ref|XP_019088904.1| PREDICTED: peptide chain release factor PrfB...    58   2e-06
ref|XP_010435495.1| PREDICTED: peptide chain release factor PrfB...    58   2e-06

>ref|XP_020875049.1| peptide chain release factor PrfB1, chloroplastic isoform X3
           [Arabidopsis lyrata subsp. lyrata]
          Length = 368

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTGLS 92
           KGGQNVNKVETAVRI H+PTGVAVRCTGLS
Sbjct: 330 KGGQNVNKVETAVRITHIPTGVAVRCTGLS 359


>gb|ACF83924.1| unknown [Zea mays]
          Length = 174

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/29 (82%), Positives = 29/29 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTGL 89
           KGGQNVNKVETAVR+VH+PTG+AVRC+G+
Sbjct: 136 KGGQNVNKVETAVRMVHIPTGIAVRCSGI 164


>emb|CCQ57726.1| Peptide chain release factor 2; programmed frameshift-containing
           [Crocosphaera watsonii WH 0005]
 emb|CCQ70050.1| Peptide chain release factor 2; programmed frameshift-containing
           [Crocosphaera watsonii WH 0402]
          Length = 149

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVR+VH+PTG+AVRCT
Sbjct: 28  KGGQNVNKVETAVRVVHVPTGIAVRCT 54


>dbj|BAW96298.1| peptide chain release factor 2 [Synechococcus sp. NIES-970]
          Length = 319

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 196 KGGQNVNKVETAVRIVHLPTGVAVRCT 222


>gb|AMA08031.1| peptide chain release factor 2 [Synechococcus sp. PCC 73109]
          Length = 338

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 217 KGGQNVNKVETAVRIVHLPTGVAVRCT 243


>gb|ANV89346.1| peptide chain release factor 2 [Synechococcus sp. PCC 8807]
          Length = 348

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 227 KGGQNVNKVETAVRIVHLPTGVAVRCT 253


>gb|ANV86169.1| peptide chain release factor 2 [Synechococcus sp. PCC 7117]
          Length = 348

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 227 KGGQNVNKVETAVRIVHLPTGVAVRCT 253


>ref|WP_051352868.1| peptide chain release factor 2 [Synechococcus sp. NKBG15041c]
          Length = 350

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 227 KGGQNVNKVETAVRIVHLPTGVAVRCT 253


>ref|WP_012305825.1| MULTISPECIES: peptide chain release factor 2 [Synechococcus]
 gb|ACA98201.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_072007995.1| peptide chain release factor 2 [Synechococcus sp. NKBG042902]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_071932312.1| peptide chain release factor 2 [Synechococcus sp. PCC 8807]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_071925373.1| peptide chain release factor 2 [Synechococcus sp. PCC 7117]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_071884890.1| peptide chain release factor 2 [Synechococcus sp. PCC 73109]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_065715149.1| peptide chain release factor 2 [Synechococcus sp. PCC 7003]
 gb|ANV85465.1| peptide chain release factor 2 [Synechococcus sp. PCC 7003]
          Length = 359

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 238 KGGQNVNKVETAVRIVHLPTGVAVRCT 264


>ref|WP_099240473.1| peptide chain release factor 2 [Synechococcus sp. BDU 130192]
          Length = 370

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 249 KGGQNVNKVETAVRIVHLPTGVAVRCT 275


>ref|WP_096418966.1| peptide chain release factor 2 [Synechococcus sp. NIES-970]
          Length = 372

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCT 83
           KGGQNVNKVETAVRIVHLPTGVAVRCT
Sbjct: 249 KGGQNVNKVETAVRIVHLPTGVAVRCT 275


>ref|XP_019088905.1| PREDICTED: peptide chain release factor PrfB1, chloroplastic
           isoform X4 [Camelina sativa]
          Length = 393

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTG 86
           KGGQNVNKVETAVRI H+PTGVAVRCTG
Sbjct: 331 KGGQNVNKVETAVRITHIPTGVAVRCTG 358


>ref|XP_019086070.1| PREDICTED: peptide chain release factor PrfB1, chloroplastic
           isoform X5 [Camelina sativa]
          Length = 393

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTG 86
           KGGQNVNKVETAVRI H+PTGVAVRCTG
Sbjct: 331 KGGQNVNKVETAVRITHIPTGVAVRCTG 358


>ref|XP_019088904.1| PREDICTED: peptide chain release factor PrfB1, chloroplastic
           isoform X3 [Camelina sativa]
          Length = 394

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTG 86
           KGGQNVNKVETAVRI H+PTGVAVRCTG
Sbjct: 332 KGGQNVNKVETAVRITHIPTGVAVRCTG 359


>ref|XP_010435495.1| PREDICTED: peptide chain release factor PrfB1, chloroplastic
           isoform X4 [Camelina sativa]
          Length = 394

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +3

Query: 3   KGGQNVNKVETAVRIVHLPTGVAVRCTG 86
           KGGQNVNKVETAVRI H+PTGVAVRCTG
Sbjct: 332 KGGQNVNKVETAVRITHIPTGVAVRCTG 359


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