BLASTX nr result

ID: Cheilocostus21_contig00015144 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00015144
         (611 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_018681817.1| PREDICTED: nuclear pore complex protein NUP2...   148   2e-37
ref|XP_020085929.1| nuclear pore complex protein NUP214 isoform ...    60   4e-07
ref|XP_020085928.1| nuclear pore complex protein NUP214 isoform ...    60   4e-07
ref|XP_020085927.1| nuclear pore complex protein NUP214 isoform ...    60   4e-07
ref|XP_020085926.1| nuclear pore complex protein NUP214 isoform ...    60   4e-07

>ref|XP_018681817.1| PREDICTED: nuclear pore complex protein NUP214 [Musa acuminata subsp.
            malaccensis]
          Length = 1784

 Score =  148 bits (373), Expect = 2e-37
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
 Frame = -1

Query: 611  TFATIQQKASGNSKYVTPSLTREVQPEIHTLSKDIRGMPSQQISKSPASSVFKWAKEPSV 432
            +FA IQQKA+     +T SLT +VQPE++ +SKDI+  PSQQ SKS +S+VF+W    S 
Sbjct: 1059 SFAVIQQKATEKPASLTESLTGKVQPEVYRVSKDIQEKPSQQTSKSQSSTVFRW----SG 1114

Query: 431  LPQSLGSKSHPTEEIKKTPSQSSAILSPTSSLFPPGSLKAQEPKSNQFENMKNSTTLSSI 252
             PQ L SKSHPTEEI+   +++S  ++P SSL  PG+L   E KSN    ++ ST L+S+
Sbjct: 1115 SPQPLVSKSHPTEEIRNHMTETSVAMAPASSLLSPGTL---ESKSNPMREIRKSTPLTSV 1171

Query: 251  DMIPSSSLFN--XXXXXXXXXXXXXXXXSNLSIKSVSPPKLMSNMPKEAPKSTISSLNTA 78
             M P+SSLFN                  SN S+KSVS PK+  N+  EAP +  +S+   
Sbjct: 1172 AMSPTSSLFNSASSGAKENTGSDVVTHISNSSVKSVSFPKMTPNVQMEAPNTVATSIKFP 1231

Query: 77   SGVSPTKITSKEL-VQGNKQLNLKAL 3
            SG S  K  SKE   Q  KQL+LK L
Sbjct: 1232 SGTSTPKSISKEAKTQVEKQLSLKTL 1257


>ref|XP_020085929.1| nuclear pore complex protein NUP214 isoform X4 [Ananas comosus]
          Length = 1701

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
 Frame = -1

Query: 605  ATIQQKASG--NSKYVTPSLTREVQPEIHTLS--KDIRGMPSQQISKSPASSVFKWAKEP 438
            A IQ+K SG  ++    PS+T+  +P+ +TL+  +  +  PS Q   S  SSVFKWA++ 
Sbjct: 939  ALIQKKDSGTLSASSSEPSITK-FKPQTYTLTLNEGAQEKPSNQGFGSQPSSVFKWARDL 997

Query: 437  SVLPQSLGSKSHPTEEIKKTPSQSSAILSPTSSLFPPGSLKAQEPKSNQFENMKNSTTLS 258
            S   Q++  KS P EE  K+  QSS    P+  LF    + AQ       EN+  S+ + 
Sbjct: 998  SASSQTMELKSPPLEEGPKSAIQSSEFKVPSRPLF----INAQTVVK---ENIP-SSGIK 1049

Query: 257  SIDMIPSSSLFNXXXXXXXXXXXXXXXXSNLSIKSVSPPKLMSNMPKEAPKSTISSLNTA 78
            S  +  + S  N                 + +++++S PK  SN+  E   ST  SLN  
Sbjct: 1050 STGITQTGSQLN-----------------SSTVENISKPKAFSNLQLEKSTST-PSLNFL 1091

Query: 77   SGVSPTKITSKE 42
            S V P K  + E
Sbjct: 1092 SNVPPMKTLTTE 1103


>ref|XP_020085928.1| nuclear pore complex protein NUP214 isoform X3 [Ananas comosus]
          Length = 1775

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
 Frame = -1

Query: 605  ATIQQKASG--NSKYVTPSLTREVQPEIHTLS--KDIRGMPSQQISKSPASSVFKWAKEP 438
            A IQ+K SG  ++    PS+T+  +P+ +TL+  +  +  PS Q   S  SSVFKWA++ 
Sbjct: 1044 ALIQKKDSGTLSASSSEPSITK-FKPQTYTLTLNEGAQEKPSNQGFGSQPSSVFKWARDL 1102

Query: 437  SVLPQSLGSKSHPTEEIKKTPSQSSAILSPTSSLFPPGSLKAQEPKSNQFENMKNSTTLS 258
            S   Q++  KS P EE  K+  QSS    P+  LF    + AQ       EN+  S+ + 
Sbjct: 1103 SASSQTMELKSPPLEEGPKSAIQSSEFKVPSRPLF----INAQTVVK---ENIP-SSGIK 1154

Query: 257  SIDMIPSSSLFNXXXXXXXXXXXXXXXXSNLSIKSVSPPKLMSNMPKEAPKSTISSLNTA 78
            S  +  + S  N                 + +++++S PK  SN+  E   ST  SLN  
Sbjct: 1155 STGITQTGSQLN-----------------SSTVENISKPKAFSNLQLEKSTST-PSLNFL 1196

Query: 77   SGVSPTKITSKE 42
            S V P K  + E
Sbjct: 1197 SNVPPMKTLTTE 1208


>ref|XP_020085927.1| nuclear pore complex protein NUP214 isoform X2 [Ananas comosus]
          Length = 1800

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
 Frame = -1

Query: 605  ATIQQKASG--NSKYVTPSLTREVQPEIHTLS--KDIRGMPSQQISKSPASSVFKWAKEP 438
            A IQ+K SG  ++    PS+T+  +P+ +TL+  +  +  PS Q   S  SSVFKWA++ 
Sbjct: 1038 ALIQKKDSGTLSASSSEPSITK-FKPQTYTLTLNEGAQEKPSNQGFGSQPSSVFKWARDL 1096

Query: 437  SVLPQSLGSKSHPTEEIKKTPSQSSAILSPTSSLFPPGSLKAQEPKSNQFENMKNSTTLS 258
            S   Q++  KS P EE  K+  QSS    P+  LF    + AQ       EN+  S+ + 
Sbjct: 1097 SASSQTMELKSPPLEEGPKSAIQSSEFKVPSRPLF----INAQTVVK---ENIP-SSGIK 1148

Query: 257  SIDMIPSSSLFNXXXXXXXXXXXXXXXXSNLSIKSVSPPKLMSNMPKEAPKSTISSLNTA 78
            S  +  + S  N                 + +++++S PK  SN+  E   ST  SLN  
Sbjct: 1149 STGITQTGSQLN-----------------SSTVENISKPKAFSNLQLEKSTST-PSLNFL 1190

Query: 77   SGVSPTKITSKE 42
            S V P K  + E
Sbjct: 1191 SNVPPMKTLTTE 1202


>ref|XP_020085926.1| nuclear pore complex protein NUP214 isoform X1 [Ananas comosus]
          Length = 1806

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
 Frame = -1

Query: 605  ATIQQKASG--NSKYVTPSLTREVQPEIHTLS--KDIRGMPSQQISKSPASSVFKWAKEP 438
            A IQ+K SG  ++    PS+T+  +P+ +TL+  +  +  PS Q   S  SSVFKWA++ 
Sbjct: 1044 ALIQKKDSGTLSASSSEPSITK-FKPQTYTLTLNEGAQEKPSNQGFGSQPSSVFKWARDL 1102

Query: 437  SVLPQSLGSKSHPTEEIKKTPSQSSAILSPTSSLFPPGSLKAQEPKSNQFENMKNSTTLS 258
            S   Q++  KS P EE  K+  QSS    P+  LF    + AQ       EN+  S+ + 
Sbjct: 1103 SASSQTMELKSPPLEEGPKSAIQSSEFKVPSRPLF----INAQTVVK---ENIP-SSGIK 1154

Query: 257  SIDMIPSSSLFNXXXXXXXXXXXXXXXXSNLSIKSVSPPKLMSNMPKEAPKSTISSLNTA 78
            S  +  + S  N                 + +++++S PK  SN+  E   ST  SLN  
Sbjct: 1155 STGITQTGSQLN-----------------SSTVENISKPKAFSNLQLEKSTST-PSLNFL 1196

Query: 77   SGVSPTKITSKE 42
            S V P K  + E
Sbjct: 1197 SNVPPMKTLTTE 1208


Top