BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00014871
         (1855 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   617   0.0  
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   614   0.0  
ref|XP_015866800.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   585   0.0  
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo...   563   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     577   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   579   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                        578   0.0  
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     574   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   573   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   575   0.0  
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   563   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   568   0.0  
gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposo...   528   0.0  
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   554   0.0  
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   546   0.0  
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...   546   e-180
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen...   521   e-177
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   542   e-176
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   539   e-176
gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]       536   e-174

>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  617 bits (1592), Expect(2) = 0.0
 Identities = 302/409 (73%), Positives = 353/409 (86%), Gaps = 2/409 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEETIYM+QPEGF +  K+D+VCLLK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 1431 EQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFM 1490

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            I H Y+R  YD+CVY R+L DGS IYLLLYVDDMLIA+K+M EINKLKS L+GEFEMKDL
Sbjct: 1491 IQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDL 1550

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGM+I R+R AGKL +SQK++IEKVL RFGM  AK+VSTPLA HF+LSA +SPQ
Sbjct: 1551 GAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGMDKAKTVSTPLAPHFKLSAELSPQ 1610

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            SDE+ + MSH+PYS AVGS+MYAMVCTRPDI+HAVSVVSR+M+ PGKEHWQAVKWILRYL
Sbjct: 1611 SDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYMSCPGKEHWQAVKWILRYL 1670

Query: 1081 QGTINSCLEFKRSE--STVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVA 1254
            +G+ + CL + +S+  S+VTGYVDSDYAGDLDKRRS+TGY+FT    AISWKA LQSTVA
Sbjct: 1671 RGSADLCLVYDQSDCTSSVTGYVDSDYAGDLDKRRSLTGYVFTYSGGAISWKAVLQSTVA 1730

Query: 1255 LSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHI 1434
            LSTTEAEYMA+ EA+KEA+W++GL+  L    +   V CDSQSAIHLTK+QMFHERTKHI
Sbjct: 1731 LSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIHLTKNQMFHERTKHI 1790

Query: 1435 DVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            DVRYHFVR+ V+QG+I + K+ T  NP+DMLTK +   KFKHCL+LIGI
Sbjct: 1791 DVRYHFVREHVTQGDIVISKVATEKNPADMLTKVIPAYKFKHCLDLIGI 1839



 Score =  129 bits (323), Expect(2) = 0.0
 Identities = 58/92 (63%), Positives = 78/92 (84%)
 Frame = +2

Query: 44   ETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKK 223
            E+ GI EPS+Y+EA++C +S++W +AM EEIESLHKN TW LVKP  ++K++G KWVFKK
Sbjct: 1316 ESIGI-EPSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKK 1374

Query: 224  KDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            K+G  G+E T+FKARLVAKG++Q EGID+N+V
Sbjct: 1375 KEGILGVEATRFKARLVAKGFTQKEGIDYNEV 1406


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  614 bits (1583), Expect(2) = 0.0
 Identities = 303/413 (73%), Positives = 354/413 (85%), Gaps = 4/413 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEETIYM+QPEGF +  K+D+VCLLK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 1410 EQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFM 1469

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            I H Y+R  YD+CVY R+L DGS IYLLLYVDDMLIA+K+M EINKLKS L+GEFEMKDL
Sbjct: 1470 IQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMSEINKLKSQLSGEFEMKDL 1529

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGM+I R+R AGKL +SQK++IEKVL RFGM  AK+VSTPLA HF+LSA +SPQ
Sbjct: 1530 GAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGMDKAKTVSTPLAPHFKLSAELSPQ 1589

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            SDE+ + MSH+PYS AVGS+MYAMVCTRPDI+HAVSVVSR+M+ PGKEHWQAVKWILRYL
Sbjct: 1590 SDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYMSCPGKEHWQAVKWILRYL 1649

Query: 1081 QGTINSCLEFKRSE--STVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVA 1254
            +G+ + CL + +S+  S+VTGYVDSDYAGDLDKRRS+TGY+FT    AISWKA LQSTVA
Sbjct: 1650 RGSADLCLVYDQSDCTSSVTGYVDSDYAGDLDKRRSLTGYVFTYSGGAISWKAVLQSTVA 1709

Query: 1255 LSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHI 1434
            LSTTEAEYMA+ EA+KEA+W++GL+  L    +   V CDSQSAIHLTK+QMFHERTKHI
Sbjct: 1710 LSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIHLTKNQMFHERTKHI 1769

Query: 1435 DVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIG--ISH 1587
            DVRYHFVR+ V+QG+I + K+ T  NP+DMLTK +   KFKHCL+LI   ISH
Sbjct: 1770 DVRYHFVREHVTQGDIVISKVATEKNPADMLTKVIPAYKFKHCLDLIERFISH 1822



 Score =  129 bits (323), Expect(2) = 0.0
 Identities = 58/92 (63%), Positives = 78/92 (84%)
 Frame = +2

Query: 44   ETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKK 223
            E+ GI EPS+Y+EA++C +S++W +AM EEIESLHKN TW LVKP  ++K++G KWVFKK
Sbjct: 1295 ESIGI-EPSSYNEAVTCDESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKK 1353

Query: 224  KDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            K+G  G+E T+FKARLVAKG++Q EGID+N+V
Sbjct: 1354 KEGILGVEATRFKARLVAKGFTQKEGIDYNEV 1385


>ref|XP_015866800.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107404367,
            partial [Ziziphus jujuba]
          Length = 807

 Score =  585 bits (1509), Expect = 0.0
 Identities = 287/360 (79%), Positives = 320/360 (88%), Gaps = 8/360 (2%)
 Frame = +1

Query: 385  FLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFMISHNYSRS 564
            FLHGE EETIYMQQPEGFE+E K+D+VCLLKRSLYGLKQSP QWYKRFD FM SH YSRS
Sbjct: 1    FLHGEREETIYMQQPEGFEVEGKEDHVCLLKRSLYGLKQSPHQWYKRFDGFMFSHGYSRS 60

Query: 565  QYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDLGAAKKILG 744
            QYDSCVYFR+L DGSFIYLLLYVDDMLI AK   +IN+LK++L+GEFEMKDLGAAKKILG
Sbjct: 61   QYDSCVYFRKLEDGSFIYLLLYVDDMLIVAKKKSDINRLKAELSGEFEMKDLGAAKKILG 120

Query: 745  MEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQSDEDIEYM 924
            MEI+R+R+AGKL L+Q+SF+EKVL RFGMKNAK VSTPLATHFRLSA MSPQSD DIEYM
Sbjct: 121  MEIERDRSAGKLFLTQRSFVEKVLERFGMKNAKPVSTPLATHFRLSADMSPQSDRDIEYM 180

Query: 925  SHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWI--------LRYL 1080
            SHVPYS AVGSLMYAMVCTRPDIAHAVSVVSR+MANPGK+HWQAVKWI        LRYL
Sbjct: 181  SHVPYSSAVGSLMYAMVCTRPDIAHAVSVVSRYMANPGKQHWQAVKWITXEALERHLRYL 240

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT N+CLEF  S+  V GYVD+D+AGDLD+RRS TGY+FTLGDT+ISWK+ LQ+TVALS
Sbjct: 241  RGTTNTCLEFGGSKEGVNGYVDADFAGDLDRRRSTTGYVFTLGDTSISWKSVLQATVALS 300

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA+KEAIWLR L+GEL+S  E   ++CDSQSAI+LTKDQMFHERTKHIDV
Sbjct: 301  TTEAEYMAIAEAVKEAIWLRALIGELSSEQESTVINCDSQSAIYLTKDQMFHERTKHIDV 360


>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 503

 Score =  563 bits (1452), Expect = 0.0
 Identities = 269/410 (65%), Positives = 338/410 (82%), Gaps = 3/410 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+  VC LK+SLYGLKQ+PRQWYK+FDSFM
Sbjct: 91   EQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFM 150

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            I   YSRS+YD C+YF++  DG+FIYLLLYVDDMLIA++D   I+KLK+ LN EFEMK+L
Sbjct: 151  IGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKEL 210

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R+R  GKL LSQ+ +IE++L RF M N K VSTPLA HF+LS+ + PQ
Sbjct: 211  GAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQ 270

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            + E++E MSHVPY+ AVGSLMYAMVCTRPD+A+AVS+VSR+M NPGK+HW AVKWI RYL
Sbjct: 271  TKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYL 330

Query: 1081 QGTINSCLEFKRSEST---VTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTV 1251
            +GT N  L F R+++T   V G+VDSDY GDLD+RRS++GYIFTL ++AISWKA+LQS  
Sbjct: 331  KGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIA 390

Query: 1252 ALSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKH 1431
            ALSTTEAEY++  E +KEA+W+RGL+ EL    + +TV CDSQSAIHLTK+  +H++TKH
Sbjct: 391  ALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTKH 450

Query: 1432 IDVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            IDV++HF+RDIV+ G + ++K+ T++NP+DMLTK L   KF+HCL L+G+
Sbjct: 451  IDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKPLPNAKFQHCLGLVGL 500



 Score = 87.8 bits (216), Expect = 2e-14
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +2

Query: 122 MQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKKKDGFPGIENTKFKARLVAKGYSQVEG 301
           M EEIESLHKN TW L K  + K+ +  KW++KKKDG PG+E+ + KARLV KG+ Q EG
Sbjct: 1   MNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEG 60

Query: 302 IDFNDV 319
           IDFN++
Sbjct: 61  IDFNEI 66


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  577 bits (1488), Expect = 0.0
 Identities = 284/408 (69%), Positives = 337/408 (82%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQ+DVKTAFLHGELEE IYM+QPEGF +  K++ VC LK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 834  EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 893

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +S  + RS YDSCVY + + DGS IYLLLYVDDMLIAAKD  EI KLK+ L+ EFEMKDL
Sbjct: 894  LSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 952

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R R +GKL LSQK +IEKVL RF M +AK VST LA HFRLS+ + PQ
Sbjct: 953  GAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQ 1012

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S  DIEYMS VPYS AV SLMYAMVC+RPD++HA+SVVSR+MANPGKEHW+AV+WI RYL
Sbjct: 1013 SAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYL 1072

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT ++CL+F RS   + GYVDSD+AGDLD+RRS+TGY+FT+G  A+SWKA+LQ+TVALS
Sbjct: 1073 RGTSSACLQFGRSSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALS 1132

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE IWLRGL  EL  V   I + CDSQSAI LTKDQMFHERTKHID+
Sbjct: 1133 TTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDL 1192

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGIS 1584
            RYHF+R ++++G++ V KI T DNP DM+TK +   KF+ C +L+G++
Sbjct: 1193 RYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGVT 1240



 Score =  110 bits (275), Expect = 3e-21
 Identities = 50/93 (53%), Positives = 69/93 (74%)
 Frame = +2

Query: 41  QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
           +E +G +EPSTYS+AI   D ++W+ AM +E+ESL KN +W L K  ++KK I  KW+FK
Sbjct: 717 EEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFK 776

Query: 221 KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
           +K+G    +  ++KARLVAKGYSQ+ GIDFNDV
Sbjct: 777 RKEGMSPSDEARYKARLVAKGYSQIPGIDFNDV 809


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  579 bits (1492), Expect = 0.0
 Identities = 279/407 (68%), Positives = 340/407 (83%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+ YVC LKRSLYGLKQSPRQW KRFDSFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH++ RS+YDSCVY + + +GS IYLLLYVDDMLIAAK   EI KLK  L+ EF+MKDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G+AKKILGMEI R+R +G L LSQ ++I+KVL RF M+NAK+VSTP+A HF+LSA   P 
Sbjct: 1045 GSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPS 1104

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
             D +IEYMS VPYS AVGSLMYAMVC+RPD+++A+S+VSR+M+NPGKEHW+AV+WI RYL
Sbjct: 1105 IDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYL 1164

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT  SCL+F R++  + GYVDSDYA DLD+RRS+TGY+FT+G  A+SW+ATLQS VALS
Sbjct: 1165 RGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE IWL+GL  EL+ V   I++HCDSQSAI+LTKDQMFHERTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1284

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +YHFVRD++ +G + V KI T DNP+DM+TK + V KF+ C +L+G+
Sbjct: 1285 KYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGL 1331



 Score =  110 bits (275), Expect = 3e-21
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            ++ + + EP+TY EA+ C DS  W+ AM EE++SL KN TW +V   + KK I  KW+FK
Sbjct: 809  EQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFK 868

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+G    E  K+KARLVA+GYSQ+ G+D+NDV
Sbjct: 869  RKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score =  578 bits (1489), Expect = 0.0
 Identities = 278/407 (68%), Positives = 341/407 (83%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+ YVC LKRSLYGLKQSPRQW KRFDSFM
Sbjct: 928  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 987

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH++ RS+YDSCVY + + +GS IYLLLYVDDMLIAAK   EI KLK  L+ EF+MKDL
Sbjct: 988  LSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1046

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G+AKKILGMEI R+R +G L LSQ ++I+KVL RF M+NAK+VSTP+A HF+LSA   P 
Sbjct: 1047 GSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPS 1106

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            +D +IEYMS VPYS AVGSLMYAMVC+RPD+++A+S+VSR+M+NPGKEHW+A++WI RYL
Sbjct: 1107 TDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYL 1166

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT  SCL+F R++  + GYVDSDYA DLD+RRS+TGY+FT+G  A+SW+ATLQS VALS
Sbjct: 1167 RGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1226

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE IWL+GL  EL+ V   I++HCDSQSAI+LTKDQMFHERTKHID+
Sbjct: 1227 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1286

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +YHFVRD++ +G + V KI T DNP+DM+TK + V KF+ C +L+G+
Sbjct: 1287 KYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGL 1333



 Score =  106 bits (265), Expect = 5e-20
 Identities = 46/93 (49%), Positives = 65/93 (69%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            ++ + + EP+TY EA+ C DS  W+ AM EE++SL KN TW +V   + KK I  KW+FK
Sbjct: 811  EQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFK 870

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+     E  K+KARLVA+GYSQ+ G+D+NDV
Sbjct: 871  RKEALSLSEPPKYKARLVARGYSQIPGVDYNDV 903


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  574 bits (1479), Expect = 0.0
 Identities = 281/408 (68%), Positives = 334/408 (81%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQ+DVKTAFLHGELEE IYM+QPEGF +  K++ V  LK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 804  EQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFM 863

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
             S  + RS YDSCVY + + DGS IYLLLYVDDMLIAAKD  EI KLK+ L+ EFEMKDL
Sbjct: 864  FSQKFRRSNYDSCVYLK-VVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDL 922

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R R +GKL LSQK +IEKVL RF M +AK VSTPLA HFRLS+ + PQ
Sbjct: 923  GAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQ 982

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            SD DIEYMS VPY   VGSLMYAMVC+R D++HA+SVVSR+MANPGKEHW+ V+WI +YL
Sbjct: 983  SDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYL 1042

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT ++CL+F RS   + GYVDSD+AGDLD+RRS+TGY+FT+G  A+SWKA+LQ+TVALS
Sbjct: 1043 RGTSSACLQFGRSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALS 1102

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTE EYMAI EA KEAIWLRGL  EL  V   I + CDSQSAI  TKDQMFHERTKHIDV
Sbjct: 1103 TTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFHERTKHIDV 1162

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGIS 1584
            RYHF+R ++++G++ V KI T DNP+DM+TK +   KF+ C +L+G++
Sbjct: 1163 RYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGVT 1210



 Score =  111 bits (278), Expect = 1e-21
 Identities = 52/93 (55%), Positives = 68/93 (73%)
 Frame = +2

Query: 41  QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
           +E +G +EPSTYSEAI     ++W+ AM +E+ESL KN TW LVK  ++KK I  KW+FK
Sbjct: 687 EEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFK 746

Query: 221 KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
           +K G    +  ++KARLVAKGYSQ+ GIDFNDV
Sbjct: 747 RKKGMSPSDEARYKARLVAKGYSQIPGIDFNDV 779


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  573 bits (1478), Expect(2) = 0.0
 Identities = 282/408 (69%), Positives = 337/408 (82%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQ+DVKTAFLHGELEE IYM+QP+GF +  K++ VC LK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 1132 EQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFM 1191

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +S  + RS YDSCVY + + DGS IYLLLYVDDMLIAAKD  EI KLK+ L+ EFEMKDL
Sbjct: 1192 LSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDL 1250

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R R + KL LSQK +IEKVL RF M +AK VSTPLA HFRLS+ + PQ
Sbjct: 1251 GAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQ 1310

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            SD DIEYMS VPYS AVGSLMYAMVC+RPD++HA+SVVSR+MANPGKEHW+AV+WI RYL
Sbjct: 1311 SDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYL 1370

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT ++CL+F RS   + GYVDSD+AGDLD+ RS+ GY+FT+G  A+SWKA+LQ+TVALS
Sbjct: 1371 RGTSSACLQFGRSRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALS 1430

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KEAIWLRGL   L +V   I + CDSQSAI LTKDQMFHERTKHIDV
Sbjct: 1431 TTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDV 1490

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGIS 1584
            RYHF+R ++++G++ + KI   DNP+DM+TK +   KF+ C +L+ +S
Sbjct: 1491 RYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLVILS 1538



 Score =  115 bits (289), Expect(2) = 0.0
 Identities = 52/93 (55%), Positives = 70/93 (75%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            +E +G +EPSTYSEAI   D ++W+ AM +E+ESL KN TW LVK  ++KK I  KW+FK
Sbjct: 1015 EEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFK 1074

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+G    +  ++KARL+AKGYSQ+ GIDFNDV
Sbjct: 1075 RKEGISSSDEARYKARLIAKGYSQIPGIDFNDV 1107


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  575 bits (1482), Expect = 0.0
 Identities = 277/407 (68%), Positives = 339/407 (83%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+ YVC LKRSLYGLKQSPRQW KRFDSFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH++ RS+YDSCVY + + +GS IYLLLYVDDMLIAAK   EI KLK  L+ EF+MKDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G+AKKIL MEI R+R +G L LSQ ++I+KVL RF M+NAK+VSTP+A HF+LSA   P 
Sbjct: 1045 GSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPS 1104

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            +D +IEYMS VPYS AVGSLMYAMVC+RPD+++A+S+VSR+M+NPGKEHW+ V+WI RYL
Sbjct: 1105 TDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYL 1164

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT  SCL+F R++  + GYVDSDYA DLD+RRS+TGY+FT+G  A+SW+ATLQS VALS
Sbjct: 1165 RGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE IWL+GL  EL+ V   I++HCDSQSAI+LTKDQMFHERTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1284

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +YHFVRD++ +G + V KI T DNP+DM+TK + V KF+ C +L+G+
Sbjct: 1285 KYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGL 1331



 Score =  110 bits (275), Expect = 3e-21
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            ++ + + EP+TY EA+ C DS  W+ AM EE++SL KN TW +V   + KK I  KW+FK
Sbjct: 809  EQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFK 868

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+G    E  K+KARLVA+GYSQ+ G+D+NDV
Sbjct: 869  RKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  563 bits (1452), Expect(2) = 0.0
 Identities = 269/410 (65%), Positives = 338/410 (82%), Gaps = 3/410 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+  VC LK+SLYGLKQ+PRQWYK+FDSFM
Sbjct: 620  EQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFM 679

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            I   YSRS+YD C+YF++  DG+FIYLLLYVDDMLIA++D   I+KLK+ LN EFEMK+L
Sbjct: 680  IGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKEL 739

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R+R  GKL LSQ+ +IE++L RF M N K VSTPLA HF+LS+ + PQ
Sbjct: 740  GAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQ 799

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            + E++E MSHVPY+ AVGSLMYAMVCTRPD+A+AVS+VSR+M NPGK+HW AVKWI RYL
Sbjct: 800  TKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYL 859

Query: 1081 QGTINSCLEFKRSEST---VTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTV 1251
            +GT N  L F R+++T   V G+VDSDY GDLD+RRS++GYIFTL ++AISWKA+LQS  
Sbjct: 860  KGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIA 919

Query: 1252 ALSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKH 1431
            ALSTTEAEY++  E +KEA+W+RGL+ EL    + +TV CDSQSAIHLTK+  +H++TKH
Sbjct: 920  ALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTKH 979

Query: 1432 IDVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            IDV++HF+RDIV+ G + ++K+ T++NP+DMLTK L   KF+HCL L+G+
Sbjct: 980  IDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTKPLPNAKFQHCLGLVGL 1029



 Score =  123 bits (308), Expect(2) = 0.0
 Identities = 56/93 (60%), Positives = 72/93 (77%)
 Frame = +2

Query: 41  QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
           QE +   EP++YSEA+SC DS+KWLVAM EEIESLHKN TW L K  + K+ +  KW++K
Sbjct: 503 QEVNDDVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYK 562

Query: 221 KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
           KKDG PG+E+ + KARLV KG+ Q EGIDFN++
Sbjct: 563 KKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEI 595


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  568 bits (1464), Expect = 0.0
 Identities = 277/407 (68%), Positives = 332/407 (81%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKT FLHGELEE IYM QPEGF +  K+DYVC LKRSLYGLKQSPRQWYKRFDSFM
Sbjct: 915  EQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFM 974

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH + RS++DSCVY +   +GS IYLLLYVDDMLIAAK   +I  LK  L+ EF+MKDL
Sbjct: 975  LSHGFKRSEFDSCVYIK-FVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDL 1033

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R+R +G L LSQ+S+I+KVL RF M +AK VSTP+A HF+LSA     
Sbjct: 1034 GAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCAS 1093

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            +DED+EYMS VPYS AVGSLMYAMVC+ PD++HA+S+VSR+MANPGKEHW+AV+WI RYL
Sbjct: 1094 TDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYL 1153

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT ++CL+F R +  + GYVDSD+A DLDKRRS+TGY+FT+G  A+SWKATLQ  VA S
Sbjct: 1154 RGTADACLKFGRIDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQS 1213

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE++WL+GL  EL  V   I + CDSQSAI LTKDQMFHERTKHID+
Sbjct: 1214 TTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDI 1273

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +YH+VRDIV+QG + V KI   DNP+DM+TK + V KF+ C +L+GI
Sbjct: 1274 KYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLVGI 1320



 Score =  101 bits (252), Expect = 2e-18
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            ++ +   EP+TY+EA+   D  KW+ A+QEE++SL KN TW LV   + KK +  KW+FK
Sbjct: 798  EQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFK 857

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+G    E  +FK RLVAKG+SQ+ G+D+NDV
Sbjct: 858  RKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDV 890


>gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 394

 Score =  528 bits (1361), Expect = 0.0
 Identities = 251/391 (64%), Positives = 320/391 (81%), Gaps = 3/391 (0%)
 Frame = +1

Query: 418  MQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFMISHNYSRSQYDSCVYFRRL 597
            M QPEGF +  K+  VC LK+SLYGLKQ+PRQWYK+FDSFMI   YSRS+YD C+YF++ 
Sbjct: 1    MDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQF 60

Query: 598  FDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDLGAAKKILGMEIQRNRAAGK 777
             DG+FIYLLLYVDDMLIA++D   I+KLK+ LN EFEMK+LGAAKKILGMEI R+R  GK
Sbjct: 61   PDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGK 120

Query: 778  LLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQSDEDIEYMSHVPYSCAVGS 957
            L LSQ+ +IE++L RF M N K VSTPLA HF+LS+ + PQ+ E++E MSHVPY+ AVGS
Sbjct: 121  LFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGS 180

Query: 958  LMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYLQGTINSCLEFKRSEST--- 1128
            LMYAMVCTRPD+A+AVS+VSR+M NPGK+HW AVKWI RYL+GT N  L F R+++T   
Sbjct: 181  LMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNN 240

Query: 1129 VTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALSTTEAEYMAIVEALKEA 1308
            V G+VDSDY GDLD+RRS++GYIFTL ++AISWKA+LQS  ALSTTEAEY++  E +KEA
Sbjct: 241  VAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEA 300

Query: 1309 IWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDVRYHFVRDIVSQGNISV 1488
            +W+RGL+ EL    + +TV CDSQSAIHLTK+  +H++TKHIDV++HF+RDIV+ G + +
Sbjct: 301  LWIRGLVKELGLTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLL 360

Query: 1489 KKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +K+ T++NP+DMLTK L   KF+HCL L+G+
Sbjct: 361  QKVHTSENPADMLTKPLPNAKFQHCLGLVGL 391


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score =  554 bits (1427), Expect = 0.0
 Identities = 271/407 (66%), Positives = 327/407 (80%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+DYVC LKRSLYGLKQSPRQWYKRFDSFM
Sbjct: 768  EQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFM 827

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH + RS++DSCVY +   + S IYLLLYVDDMLIAAK   +I  LK  L+ EF+MKDL
Sbjct: 828  LSHGFKRSEFDSCVYIK-FVNVSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDL 886

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
             AAKKILGMEI R+R +G L LSQ+S+I+KVL RF M + K VST +A HF+LSA     
Sbjct: 887  DAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQRFNMHDTKPVSTHIAPHFKLSALQCAS 946

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            +DED+EYMS VPYS  VGSLMYAMVC+R D++HA+S+VSR+MANPGKEHW+A++WI RYL
Sbjct: 947  TDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHAMSLVSRYMANPGKEHWKAIQWIFRYL 1006

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            + T N+CL+F R+   + GYVDSD+A DLDKRRS+TGY+FT+G  A+SWKATL+  VA S
Sbjct: 1007 RDTANACLKFGRTNKGLIGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLRHVVAQS 1066

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE++WL+GL  EL  V   I + CDSQSAI LTKDQMFHERTKHID+
Sbjct: 1067 TTEAEYMAIAEACKESVWLKGLFAELCGVYSCINLFCDSQSAICLTKDQMFHERTKHIDI 1126

Query: 1441 RYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            +YH+VRD+V+QG + V KI T DNP DM+TK + V KF+ C +L+GI
Sbjct: 1127 KYHYVRDVVAQGKLKVCKISTHDNPVDMMTKHVPVAKFELCSSLVGI 1173


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  546 bits (1408), Expect(2) = 0.0
 Identities = 272/408 (66%), Positives = 330/408 (80%), Gaps = 1/408 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            +QLDVKTAFLHG+LEETIYM QPEGF  E K+D+VC LK+SLYGLKQSPRQWYKRFD+FM
Sbjct: 1487 QQLDVKTAFLHGDLEETIYMDQPEGFLAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFM 1546

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
             +H +SRS +DSCVY +++   S IYLLLYVDDMLIAA ++ EIN LK  L+ EF+MKDL
Sbjct: 1547 TTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVDDMLIAANNITEINILKKLLSKEFDMKDL 1606

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G AKKILGMEI R    G + LSQK +I KVL RF M  +K VSTPLA+HF+LS    PQ
Sbjct: 1607 GVAKKILGMEISREN--GVVHLSQKRYIRKVLERFNMDMSKPVSTPLASHFKLSELQMPQ 1664

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S +++E+MS VPY+ AVGS+MYAMVCTRPDIA +VSVVS++MANPGK HW+AVKWILRYL
Sbjct: 1665 SMDEVEHMSKVPYASAVGSIMYAMVCTRPDIAQSVSVVSKYMANPGKRHWEAVKWILRYL 1724

Query: 1081 QGTINSCLEFKRSES-TVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVAL 1257
            +G  +  L F++SE  ++ GYVDSDYAGDLD+RRS TGYIFTL  +A+SWK+TLQS VAL
Sbjct: 1725 KGAPDVGLTFRKSEGISILGYVDSDYAGDLDRRRSTTGYIFTLVGSAVSWKSTLQSIVAL 1784

Query: 1258 STTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHID 1437
            STTEAEYMA  EA+KEAIWL+GL+ EL+S   K  + CDSQSAIHL K+Q FHERTKHID
Sbjct: 1785 STTEAEYMAATEAVKEAIWLKGLVAELSSAQLKSILKCDSQSAIHLIKNQRFHERTKHID 1844

Query: 1438 VRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            VR+HF+RD+V +G I V+K+ T DN +DMLTK + + KF HC +L G+
Sbjct: 1845 VRFHFIRDVVEKGAIKVEKVITDDNAADMLTKIVPLAKFAHCKDLAGV 1892



 Score =  120 bits (300), Expect(2) = 0.0
 Identities = 52/86 (60%), Positives = 70/86 (81%)
 Frame = +2

Query: 62   EPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKKKDGFPG 241
            EPS+Y EA SCKD+++W +AM EE+ESLH+N TWVLVK  +  + +G KWV+KKK+G P 
Sbjct: 1377 EPSSYIEATSCKDAAQWQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPE 1436

Query: 242  IENTKFKARLVAKGYSQVEGIDFNDV 319
            +E  +FKARLVAKG+SQ EGID+N++
Sbjct: 1437 VEAARFKARLVAKGFSQKEGIDYNEI 1462


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
            baccatum]
          Length = 1526

 Score =  546 bits (1408), Expect(2) = e-180
 Identities = 265/407 (65%), Positives = 326/407 (80%), Gaps = 3/407 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHG LEE IY+QQPEGF +  K+++VC LK+SLYGLKQSPRQWYKRFDSFM
Sbjct: 580  EQLDVKTAFLHGNLEEEIYIQQPEGFVVPGKENHVCRLKKSLYGLKQSPRQWYKRFDSFM 639

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
              H YSRS YD+CVYF++L DGS +YLLLYVDDMLIAA+D   ++KLK  LN EF+MKDL
Sbjct: 640  TGHGYSRSSYDNCVYFQKLSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDL 699

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G AKKILGMEI R+R AGKL LSQK ++ K+L RFGM++ K+V+TPLA HF+LS+   PQ
Sbjct: 700  GPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNTPLAAHFKLSSDQCPQ 759

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S+E+   MSHVPYS AVGSLMYAMVCTRPD+A+AVSVVSRFM NPGK+HW++VKWILRYL
Sbjct: 760  SEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYL 819

Query: 1081 QGTINSCLEFKRSEST---VTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTV 1251
            +G+ +  L F R  S    V GYVD+DY GDLD+RRS++ YIFTL  +AISW ++LQ+  
Sbjct: 820  KGSPDIGLVFDRQRSDPGGVVGYVDADYGGDLDRRRSLSAYIFTLCGSAISWYSSLQAIA 879

Query: 1252 ALSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKH 1431
            ALSTTEAEY+A  E +KEAIWLRGL+ EL      + + CDSQ+A+HL +++  H +TKH
Sbjct: 880  ALSTTEAEYIAATEGVKEAIWLRGLVAELGLQQHILVMFCDSQTAVHLARNRKHHSKTKH 939

Query: 1432 IDVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNL 1572
            ID++ HF+RDIV  G I+V+KI T +NP+DMLTK L   KF HCL+L
Sbjct: 940  IDIKCHFIRDIVDAGEITVEKIHTTENPADMLTKPLPAAKFDHCLDL 986



 Score =  117 bits (293), Expect(2) = e-180
 Identities = 55/93 (59%), Positives = 67/93 (72%)
 Frame = +2

Query: 41  QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
           QE     EP  YSEAIS  DS+KW  AMQEE+ESL KN TW LV   E K+VI  KW+FK
Sbjct: 463 QEMGEDGEPKNYSEAISGDDSAKWTAAMQEEVESLLKNETWDLVMLPEGKRVISCKWIFK 522

Query: 221 KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
           +K+G PG+EN ++KAR V +G+ Q EGIDFN+V
Sbjct: 523 RKEGIPGVENARYKARFVVRGFDQQEGIDFNEV 555


>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 502

 Score =  521 bits (1343), Expect = e-177
 Identities = 256/410 (62%), Positives = 314/410 (76%), Gaps = 2/410 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQ+DVKTAFLHG+LEE IYM QPEGF    K+D VC L++SLYGLKQSPRQWYKRFD++M
Sbjct: 91   EQMDVKTAFLHGDLEEDIYMSQPEGFVETGKEDLVCRLRKSLYGLKQSPRQWYKRFDTYM 150

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +   Y+R  YD CVY+    DG  I LLLYVDDMLIA KDM +I +LK  L  EF+MKDL
Sbjct: 151  LKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLIACKDMSKIEELKKKLGAEFDMKDL 210

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAA+ ILG+EI+R+R AGK+ LSQ+ +I +VL RF M  AK VS PLA H++LSA   P 
Sbjct: 211  GAAQNILGIEIRRDRKAGKIWLSQEKYILRVLERFNMDGAKVVSIPLAAHYQLSAKQRPS 270

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S ++I+ M  VPY+ AVG LMYAM+CTRPD+A A+SVVS++M+NPGK HW+AVKWILRYL
Sbjct: 271  SQKEIDAMKDVPYASAVGCLMYAMICTRPDLAQALSVVSKYMSNPGKPHWEAVKWILRYL 330

Query: 1081 QGTINSCLEFKRSE--STVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVA 1254
            +GT    + F+R +  + V G+VD+DYAGDLDKRRS TGY+FT G   +SWK+TLQ+  A
Sbjct: 331  KGTRQLGIMFERKQEVACVAGFVDADYAGDLDKRRSTTGYVFTCGGGPVSWKSTLQAVTA 390

Query: 1255 LSTTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHI 1434
            LSTTEAEYMA+ EA KEAIWL GL  E     E + V CDSQSAIHL K+Q+FH RTKHI
Sbjct: 391  LSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVKCDSQSAIHLAKNQVFHARTKHI 450

Query: 1435 DVRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGIS 1584
            DVRYH +RD V  GNI V+K+ T DN +D LTK ++V KFKHCLNL+ ++
Sbjct: 451  DVRYHRIRDWVESGNIIVEKVHTNDNAADCLTKPVAVEKFKHCLNLLSVT 500



 Score = 83.6 bits (205), Expect = 4e-13
 Identities = 36/66 (54%), Positives = 51/66 (77%)
 Frame = +2

Query: 122 MQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKKKDGFPGIENTKFKARLVAKGYSQVEG 301
           M EE+ESLHKN  W LV   +++K++G KWVF+KK+G    +  K+KARLVAKGYSQ EG
Sbjct: 1   MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGVHDADAIKYKARLVAKGYSQKEG 60

Query: 302 IDFNDV 319
           +D++++
Sbjct: 61  VDYDEI 66


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  542 bits (1397), Expect(2) = e-176
 Identities = 270/408 (66%), Positives = 326/408 (79%), Gaps = 1/408 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QP+GF++  K+++VC LK+SLYGLKQSPRQWYKRFDS+M
Sbjct: 900  EQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYM 959

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +   Y+RS YD CVY+ RL D SFIYL+LYVDDMLIAAK   +I KLK  L+ EFEMKDL
Sbjct: 960  VKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDL 1019

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAA+KILGMEI R+R   KL LSQ+S+I+KVL RFGM ++K + TP A +  L+A  +PQ
Sbjct: 1020 GAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQ 1079

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S+E+ EYMS VPY+ AVGSLMYAMVCTRPD+AHAVSVVSRFM  PG+EHWQAVK I RYL
Sbjct: 1080 SEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYL 1139

Query: 1081 QGTINSCLEF-KRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVAL 1257
            +GT +  L +   ++  VTGY DSDYAGD+D RRS+TGY+FTLG + +SWKATLQ TV L
Sbjct: 1140 RGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTL 1199

Query: 1258 STTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHID 1437
            STTEAEYMA+ EA KE IWL+GL+ +L    ++ TV+CDS SAI L KDQ+ HERTKHID
Sbjct: 1200 STTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHID 1259

Query: 1438 VRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            VRYHF+R   S+  I VKK+GTADNP+DM TK +   KF+HCL+L+ I
Sbjct: 1260 VRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304



 Score =  108 bits (269), Expect(2) = e-176
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = +2

Query: 59   SEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKKKDGFP 238
            SEPSTY EAI   DS KW  AM +E+ESLHKN+TW LV     +K+I  KWVFKKK+G  
Sbjct: 789  SEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGIS 848

Query: 239  GIENTKFKARLVAKGYSQVEGIDFNDV 319
              E  K+KAR+VA+G++Q EG+D+N++
Sbjct: 849  PAEGVKYKARVVARGFNQREGVDYNEI 875


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  539 bits (1389), Expect(2) = e-176
 Identities = 260/371 (70%), Positives = 314/371 (84%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHGELEE IYM QPEGF +  K+ YVC LKRSLYGLKQSPRQW KRFDSFM
Sbjct: 926  EQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFM 985

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH++ RS+YDSCVY + + +GS IYLLLYVDDMLIAAK   EI KLK  L+ EF+MKDL
Sbjct: 986  LSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDL 1044

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            G+AKKILGMEI R+R +G L LSQ ++I+KVL RF M+NAK+VSTP+A HF+LSA   P 
Sbjct: 1045 GSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPS 1104

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
             D +IEYMS VPYS AVGSLMYAMVC+RPD+++A+S+VSR+M+NPGKEHW+AV+WI RYL
Sbjct: 1105 IDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYL 1164

Query: 1081 QGTINSCLEFKRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVALS 1260
            +GT  SCL+F R++  + GYVDSDYA DLD+RRS+TGY+FT+G  A+SW+ATLQS VALS
Sbjct: 1165 RGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 1261 TTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHIDV 1440
            TTEAEYMAI EA KE IWL+GL  EL+ V   I++HCDS+SAI+LTKDQMFHERTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDI 1284

Query: 1441 RYHFVRDIVSQ 1473
            +YHFVRD++ +
Sbjct: 1285 KYHFVRDVIEE 1295



 Score =  110 bits (275), Expect(2) = e-176
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 41   QETDGISEPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFK 220
            ++ + + EP+TY EA+ C DS  W+ AM EE++SL KN TW +V   + KK I  KW+FK
Sbjct: 809  EQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFK 868

Query: 221  KKDGFPGIENTKFKARLVAKGYSQVEGIDFNDV 319
            +K+G    E  K+KARLVA+GYSQ+ G+D+NDV
Sbjct: 869  RKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901


>gb|OMO73383.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1212

 Score =  536 bits (1381), Expect = e-174
 Identities = 262/408 (64%), Positives = 323/408 (79%), Gaps = 1/408 (0%)
 Frame = +1

Query: 361  EQLDVKTAFLHGELEETIYMQQPEGFEIEDKKDYVCLLKRSLYGLKQSPRQWYKRFDSFM 540
            EQLDVKTAFLHG LEE IYM QPEGF   + +D+VCLL++ LYGLKQSPRQWYKRFDSFM
Sbjct: 802  EQLDVKTAFLHGNLEEQIYMSQPEGFIDSENEDHVCLLQKFLYGLKQSPRQWYKRFDSFM 861

Query: 541  ISHNYSRSQYDSCVYFRRLFDGSFIYLLLYVDDMLIAAKDMCEINKLKSDLNGEFEMKDL 720
            +SH+++R+QYD+CVY ++L DGS+IYLLLYVDDMLIAAKD+ EIN LK+ L+ EFEMKDL
Sbjct: 862  VSHDFARNQYDNCVYSKKLSDGSYIYLLLYVDDMLIAAKDLAEINSLKALLSSEFEMKDL 921

Query: 721  GAAKKILGMEIQRNRAAGKLLLSQKSFIEKVLGRFGMKNAKSVSTPLATHFRLSATMSPQ 900
            GAAKKILGMEI R+R  G L +SQ+ +IEKVL  F M  AK VSTPLA HF+L A+  P 
Sbjct: 922  GAAKKILGMEIWRDRKVGLLYVSQQKYIEKVLQSFQMDKAKPVSTPLAAHFKLDASALPS 981

Query: 901  SDEDIEYMSHVPYSCAVGSLMYAMVCTRPDIAHAVSVVSRFMANPGKEHWQAVKWILRYL 1080
            S++++  MS +PYS AVGSLMYAMVCTRPD+AHAVSV+SRFM+NPGK HW+AVKWI+RYL
Sbjct: 982  SNDEVNCMSIIPYSSAVGSLMYAMVCTRPDLAHAVSVISRFMSNPGKTHWEAVKWIMRYL 1041

Query: 1081 QGTINSCLEF-KRSESTVTGYVDSDYAGDLDKRRSITGYIFTLGDTAISWKATLQSTVAL 1257
             GT N CL +     S + GYVDSDYAGD  KRRS+  YIFTL   AI WKATLQ+TV L
Sbjct: 1042 NGTKNVCLVYGSDGNSGLIGYVDSDYAGDFIKRRSLACYIFTLYGCAIRWKATLQATVVL 1101

Query: 1258 STTEAEYMAIVEALKEAIWLRGLLGELNSVCEKITVHCDSQSAIHLTKDQMFHERTKHID 1437
            STTEAEYM++ E +KE +WL GL+  L     K  ++CDSQSA+ L K+ ++HER+KHID
Sbjct: 1102 STTEAEYMSLTEGIKEGMWLHGLVDSLGLDVSKPVIYCDSQSALSLAKNPVYHERSKHID 1161

Query: 1438 VRYHFVRDIVSQGNISVKKIGTADNPSDMLTKSLSVGKFKHCLNLIGI 1581
            VR +F+RD +     +++KI TA+NP+DMLTK L+  KFKH L+L+ +
Sbjct: 1162 VRLNFIRDALDNKVATIEKIPTANNPADMLTKPLTTDKFKHSLDLVNV 1209



 Score = 72.8 bits (177), Expect = 2e-09
 Identities = 33/82 (40%), Positives = 52/82 (63%)
 Frame = +2

Query: 62  EPSTYSEAISCKDSSKWLVAMQEEIESLHKNRTWVLVKPLEDKKVIGSKWVFKKKDGFPG 241
           EP +Y EAI  ++++ WL+AM EE++SL KN TW LV   +  + +G KWVFK+K+G PG
Sbjct: 717 EPRSYKEAIKSENAADWLLAMNEEMQSLAKNETWKLVPLPKGVRPVGCKWVFKRKEGIPG 776

Query: 242 IENTKFKARLVAKGYSQVEGID 307
           ++    K + +    + V  +D
Sbjct: 777 VDLQVVKHKTIRVLLAMVSTLD 798