BLASTX nr result
ID: Cheilocostus21_contig00013313
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00013313
(3585 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKA45798.1| polyprotein [Taro bacilliform CH virus] 378 e-106
ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus] >gi|... 376 e-105
gb|ACH86210.1| unknown [Citrus yellow mosaic virus] 331 2e-98
gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus] 342 2e-93
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1] 338 2e-92
gb|ASG91840.1| polyprotein [Cacao swollen shoot virus] 336 1e-91
gb|ANK58545.1| polyprotein [Fig badnavirus 1] 335 2e-91
gb|ATZ69459.1| ORF3 polyprotein [Cacao swollen shoot CE virus] 335 2e-91
gb|ATZ69526.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 335 3e-91
gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 334 4e-91
gb|ATZ69518.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 334 6e-91
gb|ATZ69522.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 334 6e-91
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 334 6e-91
gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 333 8e-91
gb|ATZ69510.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 333 8e-91
gb|ANK58536.1| polyprotein [Fig badnavirus 1] 333 1e-90
gb|ANK58548.1| polyprotein [Fig badnavirus 1] 333 1e-90
gb|ANK58539.1| polyprotein [Fig badnavirus 1] 333 1e-90
gb|ATZ69490.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus] 333 1e-90
gb|ATZ69498.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus] 333 1e-90
>gb|AKA45798.1| polyprotein [Taro bacilliform CH virus]
Length = 1803
Score = 378 bits (971), Expect = e-106
Identities = 189/294 (64%), Positives = 228/294 (77%), Gaps = 1/294 (0%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
PL+EDQI YR QRRL+NA+ + TLEQQIDPQVQLR SM ERA
Sbjct: 22 PLFEDQIRNYRQRQRRLNNARQVVGRLQRRITGRSQLHNQTLEQQIDPQVQLRNSMQERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
A+ PAEV+YH R+DD H VY+HRSEEA+LCT NQQ DR FI E+SF+QL+RSRMQ+IHI
Sbjct: 82 AIIPAEVMYHSRRDDEHHRVYVHRSEEALLCTDNQQQDRIFIQEESFKQLQRSRMQFIHI 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
GV+Q+RIQ LHRH+EGTLAL+V R+NRW D+++ ATME+DLSQ QLVYV P+ +TIG
Sbjct: 142 GVIQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIG 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DFY N+QVS+LTRGYE WR EANLLITRG VGRLSNTPN+GFAYE+ VVDYL SHGVR
Sbjct: 202 DFYNNVQVSILTRGYEAWR-GEANLLITRGLVGRLSNTPNVGFAYEVQSVVDYLVSHGVR 260
Query: 2040 ALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFDNYIVSR 1879
A+PGR + + LQG NW++RPT+ IPRQPTEV+TR+ +D I + F NY +R
Sbjct: 261 AIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTISLRFGNYTSAR 314
Score = 201 bits (510), Expect = 2e-48
Identities = 92/146 (63%), Positives = 117/146 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP + I+LETDGCMDGWGG+CKWK Q+ D R +EK+ AYASGKF+PPKSTIDA
Sbjct: 1590 LPDLELPPPDCHIVLETDGCMDGWGGVCKWKPQKCDGRRMEKICAYASGKFSPPKSTIDA 1649
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN++ + KIY L+K++++I TDCQA KPSRVRW+SFTD+ITG G+
Sbjct: 1650 EIHAVMNSLNSFKIYYLDKKELLIRTDCQAIISFFNKSAKNKPSRVRWVSFTDFITGTGL 1709
Query: 106 TVHFEHIDGQDNQLADALSRLINCLI 29
+ F+HID +DN LADALSRL++ L+
Sbjct: 1710 EIRFQHIDEKDNALADALSRLVHGLV 1735
Score = 146 bits (368), Expect(2) = 2e-34
Identities = 68/105 (64%), Positives = 85/105 (80%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPI G Y K EKK G RRSRTYKGKPH +H RIE+RKHL RNK+CKCYLC QEGHFA+E
Sbjct: 780 SIPILGYY-KTEKKYGVRRSRTYKGKPHASHARIERRKHLQRNKRCKCYLCGQEGHFARE 838
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
CPN++++IKRV +FE L +P++ DI+ + EG+ SDAIYS+ E E
Sbjct: 839 CPNDRRSIKRVVIFENLDLPEDCDIVSVQEGDNESDAIYSISEGE 883
Score = 31.6 bits (70), Expect(2) = 2e-34
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = -3
Query: 751 GYRPQIKLPKHQLNCLHIWQLNA------------TIHNMDEHCSCCKRQTMHYANMY 614
GYR IK K Q +C H+W+ N T N HC C T + +Y
Sbjct: 917 GYRSMIKATKTQHDCNHVWEYNGAGSLKCFYYKEETSVNCRMHCPQCLITTCNLCALY 974
>ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus]
gb|AKA45804.1| polyprotein [Taro bacilliform CH virus]
Length = 1803
Score = 376 bits (965), Expect = e-105
Identities = 188/294 (63%), Positives = 226/294 (76%), Gaps = 1/294 (0%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
PL+EDQI YR +RRLHNA+ + TLEQQIDPQV LR SM ERA
Sbjct: 22 PLFEDQIRNYRQRERRLHNARQVVGRLHRRITGRSQLHNQTLEQQIDPQVHLRNSMQERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
A+ PAEVLYH R DD H VY+HRSEEA+LCT NQQ DR FI E+SF+QL+RSRMQ+IHI
Sbjct: 82 AIVPAEVLYHSRCDDEHHRVYVHRSEEALLCTDNQQQDRIFIQEESFKQLQRSRMQFIHI 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
GV+Q+RIQ LHRH+EGTLAL+V R+NRW D+++ ATME+DLSQ QLVYV P+ +TIG
Sbjct: 142 GVIQLRIQALHRHDEGTLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIG 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DFY N+QVS+LTRGYE WR EANLLITRG VGRLSNTPN+GFAYE+ VVDYL SHGV+
Sbjct: 202 DFYNNVQVSILTRGYEAWR-GEANLLITRGLVGRLSNTPNVGFAYEVQSVVDYLVSHGVQ 260
Query: 2040 ALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFDNYIVSR 1879
A+PGR + + LQG NW++RPT+ IPRQPTEV+TR+ +D I + F NY +R
Sbjct: 261 AIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTISLRFGNYTSAR 314
Score = 202 bits (515), Expect = 6e-49
Identities = 93/146 (63%), Positives = 117/146 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP + I+LETDGCMDGWGG+CKWK Q+ D R +EK+ AYASGKFNPPKSTIDA
Sbjct: 1590 LPDLELPPPDCHIVLETDGCMDGWGGVCKWKPQKCDGRQMEKICAYASGKFNPPKSTIDA 1649
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN++ + KIY L+K++++I TDCQA KPSRVRW+SFTD+ITG G+
Sbjct: 1650 EIHAVMNSLNSFKIYYLDKKELLIRTDCQAIISFFNKSAKNKPSRVRWVSFTDFITGTGL 1709
Query: 106 TVHFEHIDGQDNQLADALSRLINCLI 29
+ F+HID +DN LADALSRL++ L+
Sbjct: 1710 EIRFQHIDEKDNALADALSRLVHGLV 1735
Score = 149 bits (377), Expect(2) = 1e-36
Identities = 69/105 (65%), Positives = 87/105 (82%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y K EKK G RRSRTYKGKPH +H RIE+RKHL RNK+CKCYLC QEGHFA+E
Sbjct: 780 SIPIPGYY-KIEKKYGVRRSRTYKGKPHASHARIERRKHLQRNKRCKCYLCGQEGHFARE 838
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
CPN++++IKRVA+FE L +P++ DI+ + EG+ SDAIY++ E E
Sbjct: 839 CPNDRRSIKRVAIFENLDLPEDCDIVSVQEGDNESDAIYNISEGE 883
Score = 35.8 bits (81), Expect(2) = 1e-36
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 751 GYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKRQT 635
GYR IK K Q +C H+W+ N C CCK +T
Sbjct: 917 GYRSMIKATKTQHDCNHVWEYNGA---GSFKCFCCKEET 952
>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
Length = 463
Score = 331 bits (848), Expect = 2e-98
Identities = 175/343 (51%), Positives = 229/343 (66%), Gaps = 16/343 (4%)
Frame = -1
Query: 2778 EQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLR 2599
E+ NTP LY+DQI +YR QRR HN P TLEQ +DP+V L+
Sbjct: 23 ERNNTP--LYDDQIRDYRQWQRRRHNMGRRWNQLIG------RPYNQTLEQVVDPEVALQ 74
Query: 2598 LSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRS 2422
LSM ERA L PAEVLY R DD H VY+HRSEEAILC Q DR I +S EQL RS
Sbjct: 75 LSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134
Query: 2421 RMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFP 2242
M +IH+G++QVRIQ LHR EGT AL+V R+NRW GDQ+I ATME+DL++ Q+VY+ P
Sbjct: 135 GMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194
Query: 2241 DMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDY 2062
D +T+ DF RN+Q+S+LT+GY +W+N EANLL+TRG VGRLSNTPN+ FAY+I V DY
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254
Query: 2061 LTSHGVRALPGR*YSTEALQGLNWMLRPTKV-IIPRQPTEVNTRSLLDERILISFDNYIV 1885
L SHG++ALPGR YS+ +QG W LRP+ + +P PT V+TR+++D I + F++Y
Sbjct: 255 LVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQP 314
Query: 1884 SRQPPK----------PVEEEEHHIK----AVLQKKQEVIDTL 1798
+ P P++E+E I+ A+ +++ EV DTL
Sbjct: 315 APDPAPVAYNQHDEEVPLDEDEEQIRNHTIALWREENEVWDTL 357
>gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]
Length = 1881
Score = 342 bits (876), Expect = 2e-93
Identities = 182/347 (52%), Positives = 231/347 (66%), Gaps = 13/347 (3%)
Frame = -1
Query: 2796 MSRTSTEQLNTPA-----------PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMN 2650
MSRT T Q N PL+EDQ+ +YR NQRRL N Q +
Sbjct: 1 MSRTQTVQENPSVTDGRGRQRDNTPLFEDQVRDYRQNQRRLFNLQRATRRLRGSVTGRRY 60
Query: 2649 PSQNTLEQQIDPQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTR-NQ 2473
Q+TLEQ++DPQ LRLSM ERA L PAEVLY R+D H VY HRSEE+ILCT NQ
Sbjct: 61 --QDTLEQEVDPQAALRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESILCTDGNQ 118
Query: 2472 QDRTFI*EQSFEQLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILA 2293
DRTFI +S E+L+RS M +IHIG++QVRIQ LHR EEGT+AL+V R+NRW GDQ+I A
Sbjct: 119 IDRTFIQPESLERLQRSGMAFIHIGILQVRIQILHRQEEGTMALVVFRDNRWEGDQSIFA 178
Query: 2292 TMEIDLSQRCQLVYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLS 2113
TME+DL+ QLV+V PD +TIGDF RN+Q+S+LTRGY++W+N EANLLITR GRLS
Sbjct: 179 TMEVDLTHGSQLVFVIPDTMMTIGDFARNVQLSILTRGYQNWQNGEANLLITRSMTGRLS 238
Query: 2112 NTPNIGFAYEINGVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKV-IIPRQPTEVNT 1936
NTPN+ FAY+I+ V DYL SHGV+A+ G+ Y LQG W+LRP + I P QP V T
Sbjct: 239 NTPNVAFAYQISDVTDYLASHGVKAIAGKKYDLRGLQGQQWVLRPPRANITPMQPNAVET 298
Query: 1935 RSLLDERILISFDNYIVSRQPPKPVEEEEHHIKAVLQKKQEVIDTLV 1795
R+L+D I + F NY + +P EH + +++ E+ + +V
Sbjct: 299 RNLVDGSISLRFHNYEAAPTTSRPT-YNEHDEEVESEEESELREHIV 344
Score = 184 bits (466), Expect = 4e-43
Identities = 84/143 (58%), Positives = 108/143 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDL IPP I++E+DGCM+GWG ICKWK + DPR EK+ AYASGKF KSTIDA
Sbjct: 1564 LPDLSIPPAQSCIIVESDGCMEGWGAICKWKTAKEDPRSTEKICAYASGKFGIVKSTIDA 1623
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHA++ +E+ KI+ L+K+++++ TDCQA KPSRVRWI+F+DYITG+GI
Sbjct: 1624 EIHAIIKALESFKIFYLDKKRLIVRTDCQAIVTFYNKSVGHKPSRVRWITFSDYITGIGI 1683
Query: 106 TVHFEHIDGQDNQLADALSRLIN 38
V EHIDG+DNQ+AD LSRL++
Sbjct: 1684 EVIIEHIDGKDNQIADTLSRLVH 1706
Score = 152 bits (383), Expect(2) = 3e-36
Identities = 67/105 (63%), Positives = 89/105 (84%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPI G Y+K +K G R+S++YKGKPH+TH RIEKRKHLVRNK+CKCYLC +EGHFA+E
Sbjct: 741 DIPITGYYDKT-RKYGIRKSKSYKGKPHETHARIEKRKHLVRNKRCKCYLCGEEGHFARE 799
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
CPN K++++RVA+FE + IP+++DI+ + EGE SDAIYS+ ENE
Sbjct: 800 CPNSKRDVRRVAIFEGVDIPEDYDIISVDEGEPESDAIYSISENE 844
Score = 32.0 bits (71), Expect(2) = 3e-36
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 775 FMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDE-HCSCCKRQTMHYANMY 614
+ LGK + +K+ Q NC+H W+ N I C CK+QTM + ++
Sbjct: 868 YWLGK-KNHWTAMVKVTAQQYNCMHHWEHNQEIKETAYLKCYFCKQQTMQRSRIH 921
>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
Length = 1846
Score = 338 bits (868), Expect = 2e-92
Identities = 186/351 (52%), Positives = 230/351 (65%), Gaps = 25/351 (7%)
Frame = -1
Query: 2796 MSRTSTEQL----------NTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNP 2647
MSRT T+QL + PLYEDQI +YR QRR A+ +
Sbjct: 1 MSRTVTQQLPVATTVTAERHPGTPLYEDQIRDYRRGQRRRFVARQAARRIASRITGRR-- 58
Query: 2646 SQNTLEQQIDPQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ- 2470
TLEQ ++P+ L+ SM ERA L PAEVLY R+DD H VY HRSEEAILC QQ
Sbjct: 59 FNQTLEQVVNPEESLQQSMQERANLVPAEVLYRSRRDDINHRVYSHRSEEAILCVDGQQQ 118
Query: 2469 DRTFI*EQSFEQLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILAT 2290
DR I S+E LRRS Q+IH+G+MQVRIQ LHR +EGT AL+V R+NRW GDQAI AT
Sbjct: 119 DRLVIQPDSYEALRRSGFQFIHLGIMQVRIQILHRADEGTAALVVFRDNRWQGDQAIFAT 178
Query: 2289 MEIDLSQRCQLVYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSN 2110
MEIDL+ QLVYV PD +T+ DFYRNIQ+S+LTRGYE+WRN EANLL+TRG + RLSN
Sbjct: 179 MEIDLTSGTQLVYVIPDTMMTLRDFYRNIQISILTRGYENWRNGEANLLVTRGVMARLSN 238
Query: 2109 TPNIGFAYEINGVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRS 1930
TPN+GFAY+I V D+L S GVRALPGR YS E +QG NW++R ++ IP +P+EV+TR+
Sbjct: 239 TPNVGFAYQIQHVTDHLESRGVRALPGRRYSAEQIQGQNWIIRQPQINIPMRPSEVDTRN 298
Query: 1929 LLDERILISFDNYIVSRQPPKPV-----------EEE---EHHIKAVLQKK 1819
L D + I F +Y + + P EEE EHH+ AVL ++
Sbjct: 299 LYDGSVSIRFRDYAPTDEQATPAYNKHDEEINEDEEELIQEHHVIAVLTEE 349
Score = 213 bits (542), Expect = 4e-52
Identities = 99/154 (64%), Positives = 125/154 (81%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP++ +I+LETDGCM GWGGICKWK+ ++DP+ EK+ AYASGKFNP KSTIDA
Sbjct: 1563 LPDLEVPPESCYIVLETDGCMTGWGGICKWKMLKHDPKSSEKICAYASGKFNPVKSTIDA 1622
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EI+AVMNT+E+LKIY L+K+++ I TDCQA KPSRVRW+SFTDYITG+G+
Sbjct: 1623 EIYAVMNTLESLKIYYLDKKEVTIRTDCQAIISFFNKSAQNKPSRVRWLSFTDYITGVGV 1682
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWPTEE 5
++FEHI+G+DN LAD LSRL++ L L GW T E
Sbjct: 1683 PINFEHIEGKDNLLADNLSRLVSTLCL-GWSTPE 1715
Score = 154 bits (388), Expect(2) = 3e-41
Identities = 68/111 (61%), Positives = 92/111 (82%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y K +K+LG R+S+ YKGKPH++H RIEKRKHL+RNK+CKCYLC +EGHFA+E
Sbjct: 750 DIPIPGYY-KDQKRLGIRKSQRYKGKPHESHARIEKRKHLIRNKRCKCYLCGEEGHFARE 808
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSL 805
CPN++++ KRVA+FE L +P+++DI+ ++EGE SDAIYS+ E E G L
Sbjct: 809 CPNDRKSAKRVAMFEQLELPEDYDIVSVNEGEDNSDAIYSLSEGEDGMEDL 859
Score = 47.0 bits (110), Expect(2) = 3e-41
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = -3
Query: 787 SETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHN-MDEHCSCCKRQTMHYANMY 614
+E +FMLG+ DGG+RP+IK+ QL C H W+ N I + C C+ TM A ++
Sbjct: 869 TEKMFMLGEEDGGWRPKIKVSDEQLACQHKWEHNGEIQQFVYLKCLGCQCPTMKRARIH 927
>gb|ASG91840.1| polyprotein [Cacao swollen shoot virus]
Length = 1879
Score = 336 bits (861), Expect = 1e-91
Identities = 175/326 (53%), Positives = 220/326 (67%), Gaps = 11/326 (3%)
Frame = -1
Query: 2793 SRTSTEQLNTP----APLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPS-----Q 2641
S T+T ++ P PLYEDQI +YR QRR+HN + + + S Q
Sbjct: 13 SVTNTTTMSDPEHRTTPLYEDQIRDYRQGQRRMHNLRRRARRLRRSLSQGASSSHGGRYQ 72
Query: 2640 NTLEQQIDPQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DR 2464
TLEQ+IDPQ LRLSM ERA L PAEVLY R D H VY HRSEE+ILCT Q DR
Sbjct: 73 ETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRSDTVNHRVYTHRSEESILCTEGSQIDR 132
Query: 2463 TFI*EQSFEQLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATME 2284
FI +S++QL+R+ +IH+G++QVRIQ LHR EEGT+ALIV R+NRW GDQ+I A ME
Sbjct: 133 AFIQPESYDQLQRAGFSFIHVGILQVRIQILHRQEEGTMALIVFRDNRWTGDQSIFAQME 192
Query: 2283 IDLSQRCQLVYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTP 2104
IDL++ QLVYV PD +TIGDF RN+Q+S+LTRGYE+W+N EANLLITR GRLSNTP
Sbjct: 193 IDLTKGSQLVYVIPDTMMTIGDFARNVQISILTRGYENWQNGEANLLITRAMTGRLSNTP 252
Query: 2103 NIGFAYEINGVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKV-IIPRQPTEVNTRSL 1927
N+ FAY+I G DYL SHGVRA+ G+ + + L+ W+LRP + I+P QP V TR+L
Sbjct: 253 NVAFAYQIEGATDYLASHGVRAIAGKKFDLQHLRNQQWVLRPPQTDIVPMQPRAVETRNL 312
Query: 1926 LDERILISFDNYIVSRQPPKPVEEEE 1849
+D I + F +Y V + P EE
Sbjct: 313 VDGSISLRFRDYEVQPRTSLPHYNEE 338
Score = 161 bits (407), Expect = 4e-36
Identities = 78/142 (54%), Positives = 102/142 (71%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDL +PP I++E+DGCM+GWG ICKWK + D R IEK+ AYASG KSTIDA
Sbjct: 1613 LPDLAVPPTKCCIIIESDGCMEGWGAICKWKPAKEDSRTIEKICAYASG-ICIMKSTIDA 1671
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EI+A++ +E+ KI+ L+K+ +V+ TDCQA KPSRVRWI+F+DY+TG+G+
Sbjct: 1672 EIYALIKALESFKIFYLDKKHLVLRTDCQAIVMFHNKTSTHKPSRVRWITFSDYLTGLGV 1731
Query: 106 TVHFEHIDGQDNQLADALSRLI 41
V EHI G+DN LAD LSRL+
Sbjct: 1732 EVTIEHITGKDNLLADQLSRLV 1753
Score = 151 bits (381), Expect = 5e-33
Identities = 68/105 (64%), Positives = 87/105 (82%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
++P+ G Y+KP K G RRS+TYKGKPH TH RIEK+KHLVRNK+CKCYLC EGHFA+E
Sbjct: 792 DMPLTGYYDKP--KYGVRRSQTYKGKPHATHARIEKKKHLVRNKRCKCYLCGDEGHFARE 849
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
CPN K+++KRVA+FE L +P+ ++I+ + EG+A SDAIYSV ENE
Sbjct: 850 CPNSKRDVKRVAIFEGLNLPENYEIVSVEEGDAQSDAIYSVSENE 894
>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 335 bits (859), Expect = 2e-91
Identities = 170/332 (51%), Positives = 226/332 (68%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+S E++N PL+EDQI +YR NQRR A+ + TLEQ +D
Sbjct: 14 VSTRRREEINRDQPLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRY--NQTLEQIVD 71
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQDRTFI*EQSFE 2437
P+V+L LSM ERA L PAEVLY R+D+ H VY HRSEEA+LC QQDR FI SF+
Sbjct: 72 PEVELNLSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRMFIQPNSFQ 131
Query: 2436 QLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQL 2257
+L+RS MQ+IH+GV+QVR+Q LHR +EGT+AL+V R+NRW GDQ+I A E+DL++ Q+
Sbjct: 132 ELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQI 191
Query: 2256 VYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEIN 2077
VYV PD +TIGDFYRN+Q+S+ T GYE+W+N EANLLITRG GRLSNTPN+GFAY I+
Sbjct: 192 VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251
Query: 2076 GVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFD 1897
V DYL S GV+ALPGR Y +E L+G NW++R ++ P V TR+L+D I F
Sbjct: 252 HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311
Query: 1896 NYIVSRQPPKPVEEEEHHIKAVLQKKQEVIDT 1801
+Y + +P +P E+ + V ++E+ +T
Sbjct: 312 DYTQAPEPRQPHYNEQD--EEVASDEEELAET 341
Score = 216 bits (551), Expect = 3e-53
Identities = 102/150 (68%), Positives = 121/150 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP++ F +LETDGCM GWGGICKWK +R DPR +EKV AYASGKF+P KSTIDA
Sbjct: 1567 LPDLELPPEDCFTILETDGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDA 1626
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMNT+E LKIY L+K++++I TDCQA KPSRVRW++FTD+ITG+GI
Sbjct: 1627 EIHAVMNTLEKLKIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGI 1686
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGW 17
V FEHIDG+DN LAD+LSRLIN LT W
Sbjct: 1687 NVEFEHIDGRDNVLADSLSRLINSFFLTEW 1716
Score = 159 bits (403), Expect = 1e-35
Identities = 76/129 (58%), Positives = 96/129 (74%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y KK G RRS+TYKGKPH++H RIEKRKHLVRNK+CKC+LC QEGHFA+E
Sbjct: 768 SIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARE 827
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSLFFPLFILKQ 778
CPN+K++ KR+A+FE L IP++ DI+ + EGE SDAIYS+ E E G L L L+
Sbjct: 828 CPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTLEI 887
Query: 777 FLCLEKLMG 751
L L ++ G
Sbjct: 888 VLMLGEIDG 896
Score = 65.5 bits (158), Expect = 9e-07
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMD------EHCSCCKRQTMHYA 623
E + MLG+IDGGYRPQIKLP+ Q+NC+H W IHN D HCS C+R+++ A
Sbjct: 886 EIVLMLGEIDGGYRPQIKLPEEQMNCVHNW-----IHNGDIFVQRAVHCSFCRRESIKRA 940
Query: 622 NMY 614
++
Sbjct: 941 RIH 943
>gb|ATZ69459.1| ORF3 polyprotein [Cacao swollen shoot CE virus]
Length = 1855
Score = 335 bits (859), Expect = 2e-91
Identities = 169/314 (53%), Positives = 214/314 (68%), Gaps = 2/314 (0%)
Frame = -1
Query: 2784 STEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQ 2605
S + T PL++DQI +YR QRR+HN + Q TLEQ+IDPQ
Sbjct: 19 SDPERGTNTPLFDDQIRDYRQGQRRMHNLRRRARRLQRSLSAGPGRFQETLEQEIDPQTT 78
Query: 2604 LRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTR-NQQDRTFI*EQSFEQLR 2428
LRLSM ERA L PAEVLY R+D H VY HRSEE+ILCT NQ DRTFI +S EQL+
Sbjct: 79 LRLSMQERARLVPAEVLYRSRRDTVNHRVYTHRSEESILCTEGNQIDRTFIQPESLEQLK 138
Query: 2427 RSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYV 2248
R+ ++HIG++QVRIQ LHR EEGT+ALIV R+NRW GDQ+I A ME+DL++ QLVY+
Sbjct: 139 RAGFAFVHIGILQVRIQILHRQEEGTMALIVFRDNRWTGDQSIFAQMEVDLTKGSQLVYI 198
Query: 2247 FPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVV 2068
PD +TIGDF RN+Q+S+LTRGYE+W+N EANLLITR GRLSNTPN+ FAY+I+G
Sbjct: 199 IPDTMMTIGDFARNVQISILTRGYENWQNGEANLLITRAMTGRLSNTPNVAFAYQIDGAT 258
Query: 2067 DYLTSHGVRALPGR*YSTEALQGLNWMLRPTKV-IIPRQPTEVNTRSLLDERILISFDNY 1891
DYL SHGV+A+ G+ + + L+ W+LRP + I+P QP V TR+L+D I + F +Y
Sbjct: 259 DYLASHGVKAITGKKFDLQHLRNQQWVLRPPQAPIMPMQPRTVETRNLVDGSISLRFRDY 318
Query: 1890 IVSRQPPKPVEEEE 1849
P EE
Sbjct: 319 ETQPTTSLPHYNEE 332
Score = 168 bits (425), Expect = 3e-38
Identities = 79/142 (55%), Positives = 103/142 (72%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDL +PP I++E+DGCM+GWG ICKWK + D R EK+ AYASGKF KSTIDA
Sbjct: 1606 LPDLAVPPTKCCIIIESDGCMEGWGAICKWKPAKEDSRTTEKICAYASGKFAIMKSTIDA 1665
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EI+A++ +E+ KI+ L+K+ +V+ TDCQA KPSRVRWI+F+DY+TG+G+
Sbjct: 1666 EIYALIKALESFKIFYLDKKHLVLRTDCQAIVMFHNKTSTHKPSRVRWITFSDYLTGLGV 1725
Query: 106 TVHFEHIDGQDNQLADALSRLI 41
V EHI G+DN LAD LSRL+
Sbjct: 1726 EVTIEHITGKDNLLADHLSRLV 1747
Score = 152 bits (383), Expect = 3e-33
Identities = 74/129 (57%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPI G Y+KP K G RRS TYKGKPH TH RIEK+KHLVRNK+CKCYLC EGHFA+E
Sbjct: 779 DIPITGYYDKP--KYGVRRSTTYKGKPHATHARIEKKKHLVRNKRCKCYLCGDEGHFARE 836
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR---SSLFFPLFI 787
CPN K+++KRVA+FE L +P+ ++I+ + EG+ SDAIYSV ENE S + +F+
Sbjct: 837 CPNAKRDVKRVAIFEGLNLPEAYEIVSVEEGDDQSDAIYSVSENEEKEDLLSEVEEKIFV 896
Query: 786 LKQFLCLEK 760
LK+ + + K
Sbjct: 897 LKEMIFMMK 905
>gb|ATZ69526.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 335 bits (858), Expect = 3e-91
Identities = 171/328 (52%), Positives = 221/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P ++DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFDDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMESLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLVTRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
++EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSDDEEDEDEASITSEQQTVFLLIQQ 349
Score = 196 bits (497), Expect = 9e-47
Identities = 91/151 (60%), Positives = 114/151 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1555 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1614
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1615 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1674
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1675 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1705
Score = 118 bits (295), Expect(2) = 2e-26
Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 5/113 (4%)
Frame = -1
Query: 1137 NIPIPGNYNK-----PEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN + + RRS TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 747 DFPIPGYYNNRRASSSKGRSSVRRSTTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 805
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR 814
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 806 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDER 858
Score = 33.1 bits (74), Expect(2) = 2e-26
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 872 HQKKDYWLGKSEG-YLPMVAVSKEQYKCNHAWNDNQEIPIPYLKCHFCKQ 920
>gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1839
Score = 334 bits (857), Expect = 4e-91
Identities = 172/328 (52%), Positives = 220/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P + DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFNDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMENLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLLITRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLITRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
++EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSDDEEDEDEASITSEQQTVFLLIQQ 349
Score = 195 bits (496), Expect = 1e-46
Identities = 91/151 (60%), Positives = 113/151 (74%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1561 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1620
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1621 EIHAVMNSLRKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1680
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1681 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1711
Score = 119 bits (298), Expect(2) = 9e-27
Identities = 54/113 (47%), Positives = 82/113 (72%), Gaps = 5/113 (4%)
Frame = -1
Query: 1137 NIPIPGNYN----KPEK-KLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN P K + RRS TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 748 DFPIPGYYNDRRASPSKGRSSVRRSTTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 806
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR 814
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 807 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDER 859
Score = 33.1 bits (74), Expect(2) = 9e-27
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 873 HQKREYWLGKSEG-YLPMVAVSKEQYKCNHAWNDNQEIPIPYLKCHFCKQ 921
>gb|ATZ69518.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 334 bits (856), Expect = 6e-91
Identities = 171/328 (52%), Positives = 220/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P ++DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFDDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMESLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLVTRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
+EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSNDEEDEDEASITSEQQTVFLLIQQ 349
Score = 196 bits (497), Expect = 9e-47
Identities = 91/151 (60%), Positives = 114/151 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1555 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1614
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1615 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1674
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1675 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1705
Score = 117 bits (292), Expect(2) = 4e-26
Identities = 51/113 (45%), Positives = 81/113 (71%), Gaps = 5/113 (4%)
Frame = -1
Query: 1137 NIPIPGNYN-----KPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN + + R+S TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 747 DFPIPGYYNDRRASSSKGRSSVRKSTTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 805
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR 814
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 806 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDER 858
Score = 33.1 bits (74), Expect(2) = 4e-26
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 872 HQKKEYWLGKSEG-YLPMVAVSKEQYKCNHTWNDNQEIPIPYLKCHFCKQ 920
>gb|ATZ69522.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 334 bits (856), Expect = 6e-91
Identities = 171/328 (52%), Positives = 220/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P ++DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFDDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMESLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLVTRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
+EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSNDEEDEDEASITSEQQTVFLLIQQ 349
Score = 196 bits (497), Expect = 9e-47
Identities = 91/151 (60%), Positives = 114/151 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1555 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1614
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1615 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1674
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1675 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1705
Score = 118 bits (295), Expect(2) = 2e-26
Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 5/113 (4%)
Frame = -1
Query: 1137 NIPIPGNYN-----KPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN + + RRS TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 747 DFPIPGYYNDRRASSSKGRSSVRRSTTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 805
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR 814
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 806 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDER 858
Score = 33.1 bits (74), Expect(2) = 2e-26
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 872 HQKKEYWLGKSEG-YLPMVAVSKEQYKCNHAWNDNQEIPIPYLKCHFCKQ 920
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
Length = 1892
Score = 334 bits (856), Expect = 6e-91
Identities = 176/346 (50%), Positives = 231/346 (66%), Gaps = 16/346 (4%)
Frame = -1
Query: 2787 TSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQV 2608
T +Q PL+EDQI +YR++QRR + Q + P Q TLEQ++DPQ
Sbjct: 17 TRRQQGERETPLFEDQIRDYRNSQRRAYTTQRAVRRLRRRITGRQ-PYQETLEQEVDPQA 75
Query: 2607 QLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTR-NQQDRTFI*EQSFEQL 2431
L++SM ERA L PAEVLY R+D H VY HRSEEAILCT NQ DRTFI +S E L
Sbjct: 76 DLQMSMQERARLVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTFIQPESMEAL 135
Query: 2430 RRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVY 2251
+R+ + +IHIG+MQVR+Q LHR EGT+AL+V R+ RW GDQ+I ATME+DL++ Q++Y
Sbjct: 136 QRTGISFIHIGIMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEVDLTEGRQIIY 195
Query: 2250 VFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGV 2071
V PD +TIGDF RNIQ+S+LTRGY +W+N EANLL+TRG VGRLSNTPN+ FAYEI V
Sbjct: 196 VVPDTMMTIGDFARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIGNV 255
Query: 2070 VDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKV-IIPRQPTEVNTRSLLDERILISFDN 1894
DYLTS GV+A+ GR Y + LQ W+LRP +V +P+ P V+TR+L+D I + F +
Sbjct: 256 TDYLTSQGVQAIAGRRYDSRELQNQQWILRPPQVERLPQAPKNVDTRNLIDGSISLRFRD 315
Query: 1893 YIVSRQPPKPVEEE-------------EHHIKAVLQKK-QEVIDTL 1798
Y + P P E EH + A ++++ +E+ DTL
Sbjct: 316 YATTSTPELPSYNEQDEEVDPDEEQLMEHVVAAFVEEEPKEIWDTL 361
Score = 205 bits (521), Expect = 1e-49
Identities = 93/154 (60%), Positives = 119/154 (77%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP FI+LETDGCM+GWGG+CKWK + YDP+ E++ AYASGKF+P KSTIDA
Sbjct: 1625 LPDLELPPQECFIILETDGCMEGWGGVCKWKKKEYDPKNTERICAYASGKFHPIKSTIDA 1684
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN++EA KI+ L+K + I TDCQA KPSR+RWI+FTDY+TG+GI
Sbjct: 1685 EIHAVMNSLEAFKIHYLDKPSLTIRTDCQAIIAFFDTISNHKPSRLRWINFTDYVTGLGI 1744
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWPTEE 5
V+F+H+ G+DN+LADALSRLI+ + G +E
Sbjct: 1745 PVNFQHVKGEDNRLADALSRLISVIFEAGQQWQE 1778
Score = 145 bits (367), Expect(2) = 4e-37
Identities = 64/104 (61%), Positives = 85/104 (81%)
Frame = -1
Query: 1134 IPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKEC 955
+P+PG Y + +K+ G RRS TYKGKPH TH RIEK+KHLVRNK+CKCYLC + GHFA+EC
Sbjct: 793 MPLPGYYGE-KKRYGVRRSTTYKGKPHPTHARIEKQKHLVRNKRCKCYLCGEMGHFAREC 851
Query: 954 PNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
PN+K+N +RVA++E L IP+ F+++ + EGE SDAI+S+ ENE
Sbjct: 852 PNDKKNTRRVAMYEQLNIPEGFEVVSVEEGEEVSDAIFSISENE 895
Score = 41.2 bits (95), Expect(2) = 4e-37
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 787 SETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMD-EHCSCCKRQT 635
++ ++ GK DG Y P ++ + Q C H WQ+N + ++ E CS CK++T
Sbjct: 917 TDNVYWAGKKDG-YLPYKRITREQFQCEHEWQMNQEVATVELEKCSFCKQET 967
>gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 333 bits (855), Expect = 8e-91
Identities = 171/328 (52%), Positives = 220/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P + DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFNDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMESLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLLTRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
++EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSDDEEDEDEASITSEQQTVFLLIQQ 349
Score = 196 bits (497), Expect = 9e-47
Identities = 91/151 (60%), Positives = 114/151 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1555 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1614
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1615 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1674
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1675 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1705
Score = 118 bits (295), Expect(2) = 2e-26
Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 5/113 (4%)
Frame = -1
Query: 1137 NIPIPGNYN-----KPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN + + RRS TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 747 DFPIPGYYNDRRTSSSKGRSSVRRSTTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 805
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGR 814
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 806 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDER 858
Score = 33.1 bits (74), Expect(2) = 2e-26
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 872 HQKKEYWLGKSEG-YLPMVAVSKEQYKCNHAWNDNQEIPIPYLKCHFCKQ 920
>gb|ATZ69510.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 333 bits (855), Expect = 8e-91
Identities = 171/328 (52%), Positives = 220/328 (67%), Gaps = 5/328 (1%)
Frame = -1
Query: 2757 PLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQIDPQVQLRLSMHERA 2578
P + DQI YR+NQRR +N Q Q P + TLEQ+IDPQ LR+SM ERA
Sbjct: 24 PSFNDQIRSYRNNQRRRYNVQRSFRRMRGRLTGQ--PYERTLEQEIDPQATLRMSMRERA 81
Query: 2577 ALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSFEQLRRSRMQYIHI 2401
L PAEVLYH R+D H VY HRSEEA+ C +Q DR FI QS E LRRS +IH+
Sbjct: 82 RLVPAEVLYHSREDSAHHRVYNHRSEEALSCREGEQIDRNFIQPQSMESLRRSGYNFIHV 141
Query: 2400 GVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQLVYVFPDMRLTIG 2221
G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ QLVY PD +TI
Sbjct: 142 GILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQLVYAIPDTMMTIN 201
Query: 2220 DFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEINGVVDYLTSHGVR 2041
DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I GV DYL SHGVR
Sbjct: 202 DFCQHVQISILTRGYDQWQAGEANLLLTRGMVGRLSNTSNVGFAYSIQGVTDYLASHGVR 261
Query: 2040 ALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILISFDNYIVSRQPPKP 1864
A+ GR YST +QG NW +RP + + QP+ V TR+LL I + F NY V+R+ P
Sbjct: 262 AIQGREYSTAEVQGRNWTIRPARPIATAMQPSSVQTRNLLGGAISMRFGNYGVAREAEPP 321
Query: 1863 ---VEEEEHHIKAVLQKKQEVIDTLVNQ 1789
++EE +A + +Q+ + L+ Q
Sbjct: 322 RYNSDDEEDEDEASITSEQQTVFLLIQQ 349
Score = 196 bits (497), Expect = 9e-47
Identities = 91/151 (60%), Positives = 114/151 (75%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP++ +I++E+DGCM+GWGGICKWK + DP+ E++ AYASGKFNP KSTIDA
Sbjct: 1555 LPDLEIPPEDAYIIIESDGCMEGWGGICKWKPMKKDPKKEERICAYASGKFNPIKSTIDA 1614
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1615 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFFNKSSQNKPSRVRWINFTDYITGCGV 1674
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGWP 14
+ FEHI G+DN LAD LSR+IN +I P
Sbjct: 1675 DIEFEHISGKDNILADNLSRIINLIIFEDNP 1705
Score = 119 bits (299), Expect(2) = 9e-27
Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 5/129 (3%)
Frame = -1
Query: 1137 NIPIPGNYN-----KPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEG 973
+ PIPG YN + K RRS TYKGKPH +H RI++ K+L RN+KCKC+LC +EG
Sbjct: 747 DFPIPGYYNDRRASSSKGKSSVRRSMTYKGKPHQSHARIDRTKYL-RNRKCKCFLCGEEG 805
Query: 972 HFAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSLFFPL 793
H+++ECPN+K++ KRVA++E + +PD ++++ + EG+ SD IYS+ + + R
Sbjct: 806 HYSRECPNDKKSTKRVAMWETIELPDGYEVVSVDEGDQQSDGIYSISDGDDERQD----- 860
Query: 792 FILKQFLCL 766
I ++ LC+
Sbjct: 861 HINEELLCV 869
Score = 32.7 bits (73), Expect(2) = 9e-27
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 790 HSETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMDEHCSCCKR 641
H + + LGK +G Y P + + K Q C H W N I C CK+
Sbjct: 872 HQKKEYWLGKPEG-YLPMVAVSKEQYKCNHAWNDNQEIPIPYLKCHFCKQ 920
>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 333 bits (853), Expect(2) = 1e-90
Identities = 169/332 (50%), Positives = 225/332 (67%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+S E++N PL+EDQI +YR NQRR A+ + TLEQ +D
Sbjct: 14 VSTRRREEINRDQPLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRY--NQTLEQIVD 71
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQDRTFI*EQSFE 2437
P+V+L SM ERA L PAEVLY R+D+ H VY HRSEEA+LC QQDR FI SF+
Sbjct: 72 PEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRMFIQPNSFQ 131
Query: 2436 QLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQL 2257
+L+RS MQ+IH+GV+QVR+Q LHR +EGT+AL+V R+NRW GDQ+I A E+DL++ Q+
Sbjct: 132 ELQRSGMQFIHLGVLQVRLQILHRTDEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQI 191
Query: 2256 VYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEIN 2077
VYV PD +TIGDFYRN+Q+S+ T GYE+W+N EANLLITRG GRLSNTPN+GFAY I+
Sbjct: 192 VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251
Query: 2076 GVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFD 1897
V DYL S GV+ALPGR Y +E L+G NW++R ++ P V TR+L+D I F
Sbjct: 252 HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311
Query: 1896 NYIVSRQPPKPVEEEEHHIKAVLQKKQEVIDT 1801
+Y + +P +P E+ + V ++E+ +T
Sbjct: 312 DYTQAPEPRQPHYNEQD--EEVASDEEELAET 341
Score = 32.7 bits (73), Expect(2) = 1e-90
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Frame = -3
Query: 1795 EPSGKFDYLVKYTPPTYIDFIPATKP-------CW 1712
EPSGK+DY V+YT P PAT P CW
Sbjct: 382 EPSGKYDYYVRYTAP------PATTPIEDIQPTCW 410
Score = 213 bits (542), Expect = 4e-52
Identities = 101/150 (67%), Positives = 120/150 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LP LE+PP++ FI+LET GCM GWGGICKWK +R DPR +EKV AYASGKF+P KSTIDA
Sbjct: 1567 LPHLELPPEDCFIILETHGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDA 1626
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMNT+E LKIY L+K++++I TDCQA KPSRVRW++FTD+ITG+GI
Sbjct: 1627 EIHAVMNTLEKLKIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGI 1686
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGW 17
V FEHIDG+DN LAD+LSRLIN LT W
Sbjct: 1687 NVEFEHIDGRDNVLADSLSRLINSFFLTEW 1716
Score = 159 bits (403), Expect = 1e-35
Identities = 76/129 (58%), Positives = 96/129 (74%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y KK G RRS+TYKGKPH++H RIEKRKHLVRNK+CKC+LC QEGHFA+E
Sbjct: 768 SIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARE 827
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSLFFPLFILKQ 778
CPN+K++ KR+A+FE L IP++ DI+ + EGE SDAIYS+ E E G L L L+
Sbjct: 828 CPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTLEI 887
Query: 777 FLCLEKLMG 751
L L ++ G
Sbjct: 888 VLMLGEIDG 896
Score = 65.5 bits (158), Expect = 9e-07
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMD------EHCSCCKRQTMHYA 623
E + MLG+IDGGYRPQIKLP+ Q+NC+H W IHN D HCS C+R+++ A
Sbjct: 886 EIVLMLGEIDGGYRPQIKLPEEQMNCVHNW-----IHNGDIFVQRAVHCSFCRRESIKRA 940
Query: 622 NMY 614
++
Sbjct: 941 RIH 943
>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 333 bits (853), Expect = 1e-90
Identities = 169/332 (50%), Positives = 225/332 (67%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+S E++N PL+EDQI +YR NQRR A+ + TLEQ +D
Sbjct: 14 VSTRRREEINRDQPLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRY--NQTLEQIVD 71
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQDRTFI*EQSFE 2437
P+V+L SM ERA L PAEVLY R+D+ H VY HRSEEA+LC QQDR FI SF+
Sbjct: 72 PEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRMFIQPNSFQ 131
Query: 2436 QLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQL 2257
+L+RS MQ+IH+GV+QVR+Q LHR +EGT+AL+V R+NRW GDQ+I A E+DL++ Q+
Sbjct: 132 ELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQI 191
Query: 2256 VYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEIN 2077
VYV PD +TIGDFYRN+Q+S+ T GYE+W+N EANLLITRG GRLSNTPN+GFAY I+
Sbjct: 192 VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251
Query: 2076 GVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFD 1897
V DYL S GV+ALPGR Y +E L+G NW++R ++ P V TR+L+D I F
Sbjct: 252 HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311
Query: 1896 NYIVSRQPPKPVEEEEHHIKAVLQKKQEVIDT 1801
+Y + +P +P E+ + V ++E+ +T
Sbjct: 312 DYTQAPEPRQPHYNEQD--EEVASDEEELAET 341
Score = 216 bits (549), Expect = 5e-53
Identities = 102/150 (68%), Positives = 121/150 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP++ FI+LET GCM GWGGICKWK +R DPR +EKV AYASGKF+P KSTIDA
Sbjct: 1567 LPDLELPPEDCFIILETHGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDA 1626
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMNT+E LKIY L+K++++I TDCQA KPSRVRW++FTD+ITG+GI
Sbjct: 1627 EIHAVMNTLEKLKIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGI 1686
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGW 17
V FEHIDG+DN LAD+LSRLIN LT W
Sbjct: 1687 NVEFEHIDGRDNVLADSLSRLINSFFLTEW 1716
Score = 158 bits (399), Expect = 4e-35
Identities = 75/129 (58%), Positives = 96/129 (74%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y KK G RRS+TYKGKPH++H RIEKRKHLVRNK+CKC+LC QEGHFA++
Sbjct: 768 SIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARK 827
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSLFFPLFILKQ 778
CPN+K++ KR+A+FE L IP++ DI+ + EGE SDAIYS+ E E G L L L+
Sbjct: 828 CPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTLEI 887
Query: 777 FLCLEKLMG 751
L L ++ G
Sbjct: 888 VLMLGEIDG 896
Score = 65.5 bits (158), Expect = 9e-07
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMD------EHCSCCKRQTMHYA 623
E + MLG+IDGGYRPQIKLP+ Q+NC+H W IHN D HCS C+R+++ A
Sbjct: 886 EIVLMLGEIDGGYRPQIKLPEEQMNCVHNW-----IHNGDIFVQRAVHCSFCRRESIKRA 940
Query: 622 NMY 614
++
Sbjct: 941 RIH 943
>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
Length = 1837
Score = 333 bits (853), Expect = 1e-90
Identities = 169/332 (50%), Positives = 225/332 (67%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+S E++N PL+EDQI +YR NQRR A+ + TLEQ +D
Sbjct: 14 VSTRRREEINRDQPLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRY--NQTLEQIVD 71
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQDRTFI*EQSFE 2437
P+V+L SM ERA L PAEVLY R+D+ H VY HRSEEA+LC QQDR FI SF+
Sbjct: 72 PEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRMFIQPNSFQ 131
Query: 2436 QLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQL 2257
+L+RS MQ+IH+GV+QVR+Q LHR +EGT+AL+V R+NRW GDQ+I A E+DL++ Q+
Sbjct: 132 ELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQI 191
Query: 2256 VYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEIN 2077
VYV PD +TIGDFYRN+Q+S+ T GYE+W+N EANLLITRG GRLSNTPN+GFAY I+
Sbjct: 192 VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251
Query: 2076 GVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTKVIIPRQPTEVNTRSLLDERILISFD 1897
V DYL S GV+ALPGR Y +E L+G NW++R ++ P V TR+L+D I F
Sbjct: 252 HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311
Query: 1896 NYIVSRQPPKPVEEEEHHIKAVLQKKQEVIDT 1801
+Y + +P +P E+ + V ++E+ +T
Sbjct: 312 DYTQAPEPRQPHYNEQD--EEVASDEEELAET 341
Score = 216 bits (549), Expect = 5e-53
Identities = 102/150 (68%), Positives = 121/150 (80%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLE+PP++ FI+LET GCM GWGGICKWK +R DPR +EKV AYASGKF+P KSTIDA
Sbjct: 1567 LPDLELPPEDCFIILETHGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSPIKSTIDA 1626
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMNT+E LKIY L+K++++I TDCQA KPSRVRW++FTD+ITG+GI
Sbjct: 1627 EIHAVMNTLEKLKIYYLDKKELIIRTDCQAIISFFNKSALNKPSRVRWVAFTDFITGIGI 1686
Query: 106 TVHFEHIDGQDNQLADALSRLINCLILTGW 17
V FEHIDG+DN LAD+LSRLIN LT W
Sbjct: 1687 NVEFEHIDGRDNVLADSLSRLINSFFLTEW 1716
Score = 159 bits (403), Expect = 1e-35
Identities = 76/129 (58%), Positives = 96/129 (74%)
Frame = -1
Query: 1137 NIPIPGNYNKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGHFAKE 958
+IPIPG Y KK G RRS+TYKGKPH++H RIEKRKHLVRNK+CKC+LC QEGHFA+E
Sbjct: 768 SIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIEKRKHLVRNKRCKCFLCGQEGHFARE 827
Query: 957 CPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENEGGRSSLFFPLFILKQ 778
CPN+K++ KR+A+FE L IP++ DI+ + EGE SDAIYS+ E E G L L L+
Sbjct: 828 CPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIYSISEGEDGADELQRSLQTLEI 887
Query: 777 FLCLEKLMG 751
L L ++ G
Sbjct: 888 VLMLGEIDG 896
Score = 65.5 bits (158), Expect = 9e-07
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNATIHNMD------EHCSCCKRQTMHYA 623
E + MLG+IDGGYRPQIKLP+ Q+NC+H W IHN D HCS C+R+++ A
Sbjct: 886 EIVLMLGEIDGGYRPQIKLPEEQMNCVHNW-----IHNGDIFVQRAVHCSFCRRESIKRA 940
Query: 622 NMY 614
++
Sbjct: 941 RIH 943
>gb|ATZ69490.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus]
Length = 1853
Score = 333 bits (853), Expect = 1e-90
Identities = 173/320 (54%), Positives = 219/320 (68%), Gaps = 2/320 (0%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+SR E+ TP ++DQI YR++QRR HN Q Q P + TLEQ+ID
Sbjct: 13 VSRRRNEE--TPGLSFDDQIRSYRNSQRRRHNVQQGMRRMRSRITGQ--PYERTLEQEID 68
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSF 2440
PQ LR+SM ERA L PAEVLYH R D QH VY HRSEEAI C +Q DR+FI +QS
Sbjct: 69 PQATLRMSMRERARLVPAEVLYHSRSDAAQHRVYNHRSEEAISCREGEQVDRSFIQQQSM 128
Query: 2439 EQLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQ 2260
E+L+R+ +IH+G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ Q
Sbjct: 129 ERLQRAGYNFIHVGILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQ 188
Query: 2259 LVYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEI 2080
LVY PD +T+ DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I
Sbjct: 189 LVYAIPDTMMTVNDFCQHVQISILTRGYDQWQAGEANLLVTRGMVGRLSNTSNVGFAYSI 248
Query: 2079 NGVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILIS 1903
GV DYL SHGV AL GR YST +QG NW +RP + V IP QPT V TR+L+ I +
Sbjct: 249 QGVTDYLASHGVSALQGREYSTTEVQGRNWTIRPARPVAIPMQPTSVQTRNLVGGAISMR 308
Query: 1902 FDNYIVSRQPPKPVEEEEHH 1843
F+NY +RQ E HH
Sbjct: 309 FNNYGPARQ-----TENIHH 323
Score = 195 bits (496), Expect = 1e-46
Identities = 93/146 (63%), Positives = 111/146 (76%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP+ +I++ETDGCM+GWGGICKWK + DPR EK+ AYASGKF P KSTIDA
Sbjct: 1575 LPDLEIPPEEAYIIIETDGCMEGWGGICKWKPFKKDPRKDEKICAYASGKFRPIKSTIDA 1634
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1635 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFYNKSSQNKPSRVRWINFTDYITGCGV 1694
Query: 106 TVHFEHIDGQDNQLADALSRLINCLI 29
V FEHI G+DN LAD LSR+IN +I
Sbjct: 1695 EVEFEHIAGKDNLLADNLSRIINLII 1720
Score = 117 bits (292), Expect(2) = 9e-27
Identities = 53/109 (48%), Positives = 81/109 (74%), Gaps = 4/109 (3%)
Frame = -1
Query: 1137 NIPIPGNY----NKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGH 970
+ PI G Y + K RRS +YKGKPH++H RI+K K+L R+KKCKC+LC +EGH
Sbjct: 753 DFPITGYYKGMSSTSRGKSAVRRSTSYKGKPHNSHARIDKTKYL-RSKKCKCFLCGEEGH 811
Query: 969 FAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
+++ECPN+K+++KRVA++E + +P+ ++++ + EG+ SD IYSV ENE
Sbjct: 812 YSRECPNDKKSVKRVAMWETIDLPEGYEVVSVDEGDQPSDGIYSVSENE 860
Score = 35.4 bits (80), Expect(2) = 9e-27
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNA-TIHNMDEHCSCCKRQT 635
E + LGK GGY P + + K Q CLH W+ N+ + C CK+ T
Sbjct: 880 EKAYWLGKT-GGYLPLVSVSKQQYKCLHKWEDNSPDVPKEFLKCHFCKQMT 929
>gb|ATZ69498.1| ORF3 polyprotein [Cacao swollen shoot Ghana Q virus]
Length = 1859
Score = 333 bits (853), Expect = 1e-90
Identities = 173/320 (54%), Positives = 219/320 (68%), Gaps = 2/320 (0%)
Frame = -1
Query: 2796 MSRTSTEQLNTPAPLYEDQI*EYRHNQRRLHNAQXXXXXXXXXXXRQMNPSQNTLEQQID 2617
+SR E+ TP ++DQI YR++QRR HN Q Q P + TLEQ+ID
Sbjct: 13 VSRRRNEE--TPGLSFDDQIRSYRNSQRRRHNVQQGMRRMRSRITGQ--PYERTLEQEID 68
Query: 2616 PQVQLRLSMHERAALAPAEVLYHLRQDDTQHHVYMHRSEEAILCTRNQQ-DRTFI*EQSF 2440
PQ LR+SM ERA L PAEVLYH R D QH VY HRSEEAI C +Q DR+FI +QS
Sbjct: 69 PQATLRMSMRERARLVPAEVLYHSRSDAAQHRVYNHRSEEAISCREGEQVDRSFIQQQSM 128
Query: 2439 EQLRRSRMQYIHIGVMQVRIQTLHRHEEGTLALIVLRENRWVGDQAILATMEIDLSQRCQ 2260
E+L+R+ +IH+G++QVRIQ LHR EGT+AL+V R+ RW GD++I ATME+DL++ Q
Sbjct: 129 ERLQRAGYNFIHVGILQVRIQILHRQREGTMALVVFRDTRWEGDRSIFATMEVDLTRGSQ 188
Query: 2259 LVYVFPDMRLTIGDFYRNIQVSLLTRGYEHWRNSEANLLITRGPVGRLSNTPNIGFAYEI 2080
LVY PD +T+ DF +++Q+S+LTRGY+ W+ EANLL+TRG VGRLSNT N+GFAY I
Sbjct: 189 LVYAIPDTMMTVNDFCQHVQISILTRGYDQWQAGEANLLVTRGMVGRLSNTSNVGFAYSI 248
Query: 2079 NGVVDYLTSHGVRALPGR*YSTEALQGLNWMLRPTK-VIIPRQPTEVNTRSLLDERILIS 1903
GV DYL SHGV AL GR YST +QG NW +RP + V IP QPT V TR+L+ I +
Sbjct: 249 QGVTDYLASHGVSALQGREYSTTEVQGRNWTIRPARPVAIPMQPTSVQTRNLVGGAISMR 308
Query: 1902 FDNYIVSRQPPKPVEEEEHH 1843
F+NY +RQ E HH
Sbjct: 309 FNNYGPARQ-----TENIHH 323
Score = 196 bits (498), Expect = 7e-47
Identities = 96/155 (61%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Frame = -3
Query: 466 LPDLEIPPDNYFILLETDGCMDGWGGICKWKLQRYDPRGIEKVSAYASGKFNPPKSTIDA 287
LPDLEIPP+ +I++ETDGCM+GWGGICKWK + DPR EK+ AYASGKF P KSTIDA
Sbjct: 1581 LPDLEIPPEEAYIIIETDGCMEGWGGICKWKPFKRDPRKDEKICAYASGKFRPIKSTIDA 1640
Query: 286 EIHAVMNTMEALKIYLLNKEKMVIHTDCQAXXXXXXXXXXXKPSRVRWISFTDYITGMGI 107
EIHAVMN+++ K+Y L+K + I TDCQA KPSRVRWI+FTDYITG G+
Sbjct: 1641 EIHAVMNSLKKFKLYYLSKPAVTIRTDCQAIISFYNKSSQNKPSRVRWINFTDYITGCGV 1700
Query: 106 TVHFEHIDGQDNQLADALSRLINCLIL-TGWPTEE 5
V FEHI G+DN LAD LSR+IN +I T T+E
Sbjct: 1701 EVEFEHIAGKDNLLADNLSRIINLIIFDTNQETQE 1735
Score = 117 bits (292), Expect(2) = 9e-27
Identities = 53/109 (48%), Positives = 81/109 (74%), Gaps = 4/109 (3%)
Frame = -1
Query: 1137 NIPIPGNY----NKPEKKLGFRRSRTYKGKPHDTHIRIEKRKHLVRNKKCKCYLCRQEGH 970
+ PI G Y + K RRS +YKGKPH++H RI+K K+L R+KKCKC+LC +EGH
Sbjct: 753 DFPITGYYKGRSSTSRGKSAVRRSTSYKGKPHNSHARIDKTKYL-RSKKCKCFLCGEEGH 811
Query: 969 FAKECPNEKQNIKRVALFE*LTIPDEFDILLIHEGEAFSDAIYSVYENE 823
+++ECPN+K+++KRVA++E + +P+ ++++ + EG+ SD IYSV ENE
Sbjct: 812 YSRECPNDKKSVKRVAMWETIDLPEGYEVVSVDEGDQPSDGIYSVSENE 860
Score = 35.4 bits (80), Expect(2) = 9e-27
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 784 ETIFMLGKIDGGYRPQIKLPKHQLNCLHIWQLNA-TIHNMDEHCSCCKRQT 635
E + LGK GGY P + + K Q CLH W+ N+ + C CK+ T
Sbjct: 880 EKAYWLGKT-GGYLPLVSVSKQQYKCLHQWEDNSPDVPKEFLKCHFCKQMT 929