BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00012787
         (3549 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV a...  1923   0.0  
ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV a...  1816   0.0  
ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV a...  1807   0.0  
ref|XP_020112440.1| DNA-directed RNA polymerases IV and V subuni...  1806   0.0  
gb|OAY64687.1| DNA-directed RNA polymerases IV and V subunit 2, ...  1795   0.0  
ref|XP_020255590.1| DNA-directed RNA polymerases IV and V subuni...  1705   0.0  
ref|XP_012703111.1| DNA-directed RNA polymerases IV and V subuni...  1698   0.0  
ref|XP_015636222.1| PREDICTED: DNA-directed RNA polymerases IV a...  1689   0.0  
dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]  1688   0.0  
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]        1688   0.0  
ref|XP_002468227.1| DNA-directed RNA polymerases IV and V subuni...  1682   0.0  
gb|AQK46524.1| DNA-directed RNA polymerases IV and V subunit 2 [...  1678   0.0  
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...  1675   0.0  
ref|NP_001338873.1| required to maintain repression 7 [Zea mays]...  1674   0.0  
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]        1673   0.0  
gb|PAN40366.1| hypothetical protein PAHAL_G02501 [Panicum hallii...  1672   0.0  
emb|CAJ86030.1| B0414F07.4 [Oryza sativa]                            1671   0.0  
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...  1670   0.0  
ref|XP_020692708.1| DNA-directed RNA polymerases IV and V subuni...  1669   0.0  
ref|XP_002447199.1| DNA-directed RNA polymerases IV and V subuni...  1668   0.0  

>ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis]
 ref|XP_009413519.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis]
          Length = 1198

 Score = 1923 bits (4981), Expect = 0.0
 Identities = 938/1117 (83%), Positives = 1008/1117 (90%)
 Frame = -3

Query: 3547 EHGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLK 3368
            EHG+QDLFD+LG+V VEP YDPSKKG GAWRHA+IT+GKVRLEKPEFWPE NDIE GSLK
Sbjct: 82   EHGIQDLFDTLGDVVVEPGYDPSKKGDGAWRHASITFGKVRLEKPEFWPEKNDIEEGSLK 141

Query: 3367 LLPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLP 3188
            LLPRHARLQNMTYSS +KV VRVQVYVQE+SDK K GN  YI+KRV +D++  IT+GRLP
Sbjct: 142  LLPRHARLQNMTYSSQMKVKVRVQVYVQEKSDKAKIGNSSYIQKRVQNDDEGEITIGRLP 201

Query: 3187 VMVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLS 3008
            VMV+SN+CWL+ L KSDC+FDSGGYFLIKGMEK FI QEQRCLTRLWV+DKPV TVSYLS
Sbjct: 202  VMVQSNLCWLSALGKSDCLFDSGGYFLIKGMEKTFIGQEQRCLTRLWVIDKPVATVSYLS 261

Query: 3007 EIKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLED 2828
            EIKR+RIYVK+VE P  EGFHGGK IS +FLYATMPIW+MFFALGASSDKEV EMIDL+D
Sbjct: 262  EIKRKRIYVKLVEAPKAEGFHGGKVISVYFLYATMPIWIMFFALGASSDKEVLEMIDLKD 321

Query: 2827 CDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNI 2648
            CDA  +NI+LATIKD +EQFEGFR++DKA EHVN L+K++K+PPSESFD YV+KYLFPNI
Sbjct: 322  CDAGMINIILATIKDADEQFEGFRSLDKAREHVNALIKNAKFPPSESFDEYVAKYLFPNI 381

Query: 2647 SGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRI 2468
             GHR KA FLGYMVKCL LS  GKRKCDNKDDFRNK              AHIRHAEKR+
Sbjct: 382  IGHRTKAHFLGYMVKCLLLSSFGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAEKRM 441

Query: 2467 VKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTN 2288
            V+++QRDL+G+R LQ IE Y+DASIITNGLNRAFSTG+WTHPYKKTERLSGIVATLRRTN
Sbjct: 442  VRAMQRDLSGDRDLQPIERYLDASIITNGLNRAFSTGAWTHPYKKTERLSGIVATLRRTN 501

Query: 2287 PLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSS 2108
            PLQM+SD+RK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKN AVTAVVSS
Sbjct: 502  PLQMMSDMRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAVVSS 561

Query: 2107 KILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKE 1928
            KI+EPI+DKL+ CGM KLDE+S SSL +MHKVFLNGDW+GVC DM   A+RLR +RR K 
Sbjct: 562  KIMEPILDKLIACGMEKLDEISLSSLSQMHKVFLNGDWVGVCPDMSSFADRLRSMRRAKL 621

Query: 1927 IHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXX 1748
            IHPQVEIKRDKHQKEVRIFTD GRILRPLLIVENLKKIR LKGGV SF  LMDQ      
Sbjct: 622  IHPQVEIKRDKHQKEVRIFTDAGRILRPLLIVENLKKIRNLKGGVCSFQSLMDQEIIELI 681

Query: 1747 XXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLY 1568
                 EDCQTAWGIKYLLA NE  SAP Y+HCELDPSFLLGLSCGIIPFA+HNFARRVLY
Sbjct: 682  GVEEEEDCQTAWGIKYLLAVNEGISAPNYSHCELDPSFLLGLSCGIIPFASHNFARRVLY 741

Query: 1567 QAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARP 1388
            Q+EKHSQQAIGFST NP IRVDTLSH LYYPQ PLFRTVIA+CL R DYSLGRKDS+ RP
Sbjct: 742  QSEKHSQQAIGFSTTNPSIRVDTLSHHLYYPQTPLFRTVIADCLVRADYSLGRKDSMTRP 801

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQGYNQEDSLVMN++SLERGMFRTEHFRSYKADVDNK+L+KRIKLK
Sbjct: 802  EYFNGQNAIVAVNVHQGYNQEDSLVMNRTSLERGMFRTEHFRSYKADVDNKELTKRIKLK 861

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            DKV FGK+ESKKGRVDSLDDDGFPYIGASLQ GDI+IGKVAESG+DHSIKLKHTEKGMV 
Sbjct: 862  DKVAFGKIESKKGRVDSLDDDGFPYIGASLQSGDIVIGKVAESGDDHSIKLKHTEKGMVQ 921

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFT QGIVPDI
Sbjct: 922  KVVLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTHQGIVPDI 981

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIACEGS R+ATPFSTASVDDI  QLHRAGYSRWG E
Sbjct: 982  VINPHAFPTRQTPGQLLEAALGKGIACEGSKRYATPFSTASVDDITAQLHRAGYSRWGSE 1041

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
            RVLNGRTGEMM SMIFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1042 RVLNGRTGEMMHSMIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1101

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHGAAANLHERLFMLSDF QMHIC++CQRA NVI+R V GGKK+RGPYC F
Sbjct: 1102 GEMERDCLLAHGAAANLHERLFMLSDFFQMHICQKCQRAVNVILRPVPGGKKIRGPYCGF 1161

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            CQSGENI+RINVPYGAKLLYQELFSMGICLKFETEVC
Sbjct: 1162 CQSGENIVRINVPYGAKLLYQELFSMGICLKFETEVC 1198


>ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score = 1816 bits (4704), Expect = 0.0
 Identities = 878/1127 (77%), Positives = 979/1127 (86%), Gaps = 11/1127 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HG+QDLFDSLGEV VEP YDPSKK    WRHAT+++GKVRLEKP FW   +D+   +LKL
Sbjct: 63   HGIQDLFDSLGEVNVEPGYDPSKKRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLKL 122

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
            LPRHARLQNMTYSS +KV+VRVQVY QE+SDK KTG D YI K V+SD+K+ I +GR+PV
Sbjct: 123  LPRHARLQNMTYSSQLKVEVRVQVYTQEKSDKAKTGKDAYIHKNVVSDKKKEIAIGRIPV 182

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            M+RS +CWL  LDKSDC+FDSGGYFLIKGMEK FIAQEQR L R+WV DKP  TVSYLSE
Sbjct: 183  MIRSKLCWLHTLDKSDCLFDSGGYFLIKGMEKTFIAQEQRHLARVWVTDKPSWTVSYLSE 242

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            +KR+RIY+K+VE P  EGF GGK ++FFFLYAT+P+W+MFFALGASSDKEVFEMIDL + 
Sbjct: 243  MKRKRIYIKLVEAPKAEGFSGGKVVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGES 302

Query: 2824 DAVTVNIMLATIKDTEEQFE-----------GFRNVDKAIEHVNTLVKSSKYPPSESFDG 2678
             A  +NI+LAT+K+ +E ++            FR VDKA ++VN+ VK SK+PPSESFD 
Sbjct: 303  SADLINIILATVKNADEHYKKFREDADEHDKNFRRVDKAQDYVNSQVKVSKFPPSESFDE 362

Query: 2677 YVSKYLFPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXX 2498
            YV K+LFPNISGHR KALFLGYMVKCL L+  GKRKCDNKDDFRNK              
Sbjct: 363  YVDKFLFPNISGHRQKALFLGYMVKCLLLACFGKRKCDNKDDFRNKRLDLAGELLARELR 422

Query: 2497 AHIRHAEKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLS 2318
            AHIRHAE+R+VK++QRDL G+R LQ IE Y+DASIITNGLNRAFSTG+W HPYK+TER S
Sbjct: 423  AHIRHAERRMVKAMQRDLYGDRDLQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERCS 482

Query: 2317 GIVATLRRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVK 2138
            GIVATLRRTNPLQM+SDLRK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVK
Sbjct: 483  GIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVK 542

Query: 2137 NFAVTAVVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLAN 1958
            N AVTA+VS K+ EPI+DKL+ CGM KLDE+S SS+  M KVF+NGDW+GVC+D      
Sbjct: 543  NLAVTALVSLKVTEPILDKLISCGMEKLDEISLSSISNMDKVFMNGDWVGVCADSTSFVA 602

Query: 1957 RLRCLRRVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGY 1778
            +LRC+RR + IHPQVEIKRDKHQ+EVRIF+D GRILRPLLIVENLKK  KLKGGV SF Y
Sbjct: 603  KLRCMRRARLIHPQVEIKRDKHQREVRIFSDAGRILRPLLIVENLKKTSKLKGGVCSFQY 662

Query: 1777 LMDQXXXXXXXXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFA 1598
            LMD+           EDC TAWGI++L   +E   APKY+HCELD SFLLGLSCGIIPFA
Sbjct: 663  LMDEGIIELIGVEEEEDCHTAWGIRHLFMGDEGGPAPKYSHCELDVSFLLGLSCGIIPFA 722

Query: 1597 NHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYS 1418
            NHNFARRVLYQAEKHSQQAIGFST NP IRVDTLSHQLYYPQKPLFRTVIA+CLGR DYS
Sbjct: 723  NHNFARRVLYQAEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRADYS 782

Query: 1417 LGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDN 1238
            L RKDS+ RPEYFNGQNAIVAVNVHQGYNQEDSLVMN++SLERGMFRTEHFRSYKA+V+N
Sbjct: 783  LRRKDSMPRPEYFNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVEN 842

Query: 1237 KQLSKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIK 1058
            K+L+KR KL+DKVDFGK++SKKGRVDSLDDDGFPYIGASLQ GDI+IGKVAESGEDH IK
Sbjct: 843  KELTKRFKLRDKVDFGKMQSKKGRVDSLDDDGFPYIGASLQSGDIVIGKVAESGEDHGIK 902

Query: 1057 LKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFP 878
            LKHTEKGMV KV LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFP
Sbjct: 903  LKHTEKGMVQKVVLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFP 962

Query: 877  FTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLH 698
            FTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC GS R+ATPF+TASVD I +QLH
Sbjct: 963  FTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACGGSVRYATPFTTASVDVITEQLH 1022

Query: 697  RAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 518
            RAG+SRWG E+VLNGRTGE+MRSMIFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPVA
Sbjct: 1023 RAGFSRWGSEKVLNGRTGEVMRSMIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1082

Query: 517  DRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGG 338
            DRKRFGGVKFGEMERDCLLAHGAA+NLHERLF LSDFSQMHIC+ C+RAANVI+R V GG
Sbjct: 1083 DRKRFGGVKFGEMERDCLLAHGAASNLHERLFTLSDFSQMHICQTCKRAANVILRPVVGG 1142

Query: 337  KKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
             K+RGPYCN+CQS ENI++INVPYGAKLLYQELFSMGICLKF+TEVC
Sbjct: 1143 NKIRGPYCNYCQSSENIVKINVPYGAKLLYQELFSMGICLKFDTEVC 1189


>ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Elaeis
            guineensis]
          Length = 1189

 Score = 1807 bits (4680), Expect = 0.0
 Identities = 877/1128 (77%), Positives = 976/1128 (86%), Gaps = 11/1128 (0%)
 Frame = -3

Query: 3547 EHGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLK 3368
            EHG+QDLFDSLGEV VEP YDPSKK    WRHAT+++GKVRLEKP FW   +D+   +LK
Sbjct: 62   EHGIQDLFDSLGEVNVEPGYDPSKKRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLK 121

Query: 3367 LLPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLP 3188
            LLPRHARLQNMTYSS +KV+VRV VY QE+SDK KTG D YI K V+SD+K+ I +GR+P
Sbjct: 122  LLPRHARLQNMTYSSQMKVEVRVLVYTQEKSDKAKTGKDAYIVKNVVSDKKKEIAIGRIP 181

Query: 3187 VMVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLS 3008
            VM+RS +CWL  LDKSDC+FDSGGYFLIKGMEK FIAQEQR L R+WV DKP   VSYLS
Sbjct: 182  VMIRSKLCWLHTLDKSDCLFDSGGYFLIKGMEKTFIAQEQRHLARVWVTDKPSWAVSYLS 241

Query: 3007 EIKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLED 2828
            EIKR+RIY+K+VE P  EGF GGK ++FFFLYAT+P+W+MFFALGASSDKEVFEMIDL +
Sbjct: 242  EIKRKRIYIKLVEAPKAEGFSGGKVVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGE 301

Query: 2827 CDAVTVNIMLATIKDTEEQFE-----------GFRNVDKAIEHVNTLVKSSKYPPSESFD 2681
              A  +NI+LAT+K+ +E ++            FR +DKA ++VN  VK SK+PPSESFD
Sbjct: 302  SSADLINIILATVKNADEHYKKFREDADEHDKNFRRIDKAQDYVNGQVKVSKFPPSESFD 361

Query: 2680 GYVSKYLFPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXX 2501
             YV K+LFPNI GHR KALFLGYMVKCL L+  GKRKCDNKDDFRNK             
Sbjct: 362  EYVDKFLFPNIYGHRQKALFLGYMVKCLLLACFGKRKCDNKDDFRNKRLDLAGELLAREL 421

Query: 2500 XAHIRHAEKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERL 2321
             AHIRHAE+R+VK++QRDL G+R LQ IE Y+DASIITNGLNRAFSTG+W HPYK+TER 
Sbjct: 422  RAHIRHAERRMVKAMQRDLYGDRDLQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERC 481

Query: 2320 SGIVATLRRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLV 2141
            SGIVATLRRTNPLQM+SDLRK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLV
Sbjct: 482  SGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLV 541

Query: 2140 KNFAVTAVVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLA 1961
            KN AVTA+VS K+ EPI+DKL+ CGM KLDE+S +S+  M KVFLNGDW+GVC+D     
Sbjct: 542  KNLAVTALVSLKVTEPILDKLISCGMEKLDEISLTSVSSMDKVFLNGDWVGVCADSSSFV 601

Query: 1960 NRLRCLRRVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFG 1781
             RLRC+RR   IH QVEIKRDKHQ+EVRIF+D GRILRPLLIVENL+KI KLKGGV SF 
Sbjct: 602  ARLRCMRRATLIHSQVEIKRDKHQREVRIFSDAGRILRPLLIVENLEKISKLKGGVCSFQ 661

Query: 1780 YLMDQXXXXXXXXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPF 1601
            +LMDQ           EDC TAWGI++L   +E   APKYTHCELD SFLLGLSCGIIPF
Sbjct: 662  HLMDQGIIELIGVEEEEDCPTAWGIRHLFMGDEGQPAPKYTHCELDVSFLLGLSCGIIPF 721

Query: 1600 ANHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDY 1421
            ANHNFARRVLYQAEKHSQQAIGFST NP IRVDTLSHQLYYPQKPLFRTVIA+CLGR  +
Sbjct: 722  ANHNFARRVLYQAEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRAVH 781

Query: 1420 SLGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVD 1241
            SLGRKDS+ RPEYFNGQNAIVAVNVHQGYNQEDSLVMN++SLERGMFRTEHFRSYKA+V+
Sbjct: 782  SLGRKDSMPRPEYFNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVE 841

Query: 1240 NKQLSKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSI 1061
            NK+L+KR KL+DKVDFGK++SKKG+VDSLDDDGFPYIGASLQ GDI+IGKVAESGEDH I
Sbjct: 842  NKELTKRFKLRDKVDFGKMQSKKGKVDSLDDDGFPYIGASLQSGDIVIGKVAESGEDHGI 901

Query: 1060 KLKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENF 881
            KLKHTEKGMV KV LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENF
Sbjct: 902  KLKHTEKGMVQKVVLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENF 961

Query: 880  PFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQL 701
            PFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAC GS R+ATPF+TASVD I +QL
Sbjct: 962  PFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACGGSVRYATPFTTASVDVITEQL 1021

Query: 700  HRAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPV 521
            HRAG+SRWG E+VLNGRTGE+MRSMIFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPV
Sbjct: 1022 HRAGFSRWGSEKVLNGRTGEVMRSMIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 1081

Query: 520  ADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAG 341
            ADRKRFGGVKFGEMERDCLLAHGAA+NLHERLFMLSDFSQMHIC+ C+RAANVI+R V G
Sbjct: 1082 ADRKRFGGVKFGEMERDCLLAHGAASNLHERLFMLSDFSQMHICQTCRRAANVILRPVVG 1141

Query: 340  GKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            G K+RGPYCNFCQS ENI++INVPYGAKLLYQELFSMGICLKF+TEVC
Sbjct: 1142 GNKIRGPYCNFCQSSENIVKINVPYGAKLLYQELFSMGICLKFDTEVC 1189


>ref|XP_020112440.1| DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
 ref|XP_020112441.1| DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
          Length = 1201

 Score = 1806 bits (4679), Expect = 0.0
 Identities = 879/1121 (78%), Positives = 972/1121 (86%), Gaps = 5/1121 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQDLFDSLGE+TVEP YDPSKKG  AWRHATI++GKV LEKP FW   ND E   LKL
Sbjct: 81   HGLQDLFDSLGEITVEPGYDPSKKGGSAWRHATISFGKVSLEKPVFWSGKNDYEEECLKL 140

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVY-----IRKRVLSDEKRVITM 3200
             PRHARLQNMTYSS +KV+VRVQVY  E+SDK K+G D       + KRV +DEK+ IT+
Sbjct: 141  TPRHARLQNMTYSSQMKVEVRVQVYSHEKSDKAKSGKDQSGKDQSVHKRVWADEKKEITI 200

Query: 3199 GRLPVMVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTV 3020
            GRLPVMVRSN+CWL  L KSDC+FDSGGYFLIKGMEK FIAQEQRCLTRLWV D+PV TV
Sbjct: 201  GRLPVMVRSNLCWLNTLGKSDCLFDSGGYFLIKGMEKTFIAQEQRCLTRLWVTDRPVWTV 260

Query: 3019 SYLSEIKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMI 2840
            SY+SEIKR+RIY+K++E+P  EG +G + IS +FLYAT PIW+MFFALGASSDKE+FEMI
Sbjct: 261  SYISEIKRKRIYIKLLESPKAEGSNGRRVISLYFLYATAPIWLMFFALGASSDKEIFEMI 320

Query: 2839 DLEDCDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYL 2660
            DLEDC A  VNI+LATIK+T+EQFEGFR  DKA E++N  +K++K+PPSESFD YVSKYL
Sbjct: 321  DLEDCSASIVNILLATIKETDEQFEGFRKEDKAREYINEQIKNAKFPPSESFDEYVSKYL 380

Query: 2659 FPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHA 2480
            FP +SGHR KAL LGYMVKCL L+ SGKRKCDNKDDFRNK              AHIRHA
Sbjct: 381  FPGVSGHRQKALSLGYMVKCLLLAFSGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHA 440

Query: 2479 EKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATL 2300
            EKR+VK++QRDL G+R LQ IE Y DASIITNG+NRAFSTG+W HPYK+TER+SGIVATL
Sbjct: 441  EKRMVKTMQRDLYGDRDLQLIERYWDASIITNGINRAFSTGAWCHPYKRTERISGIVATL 500

Query: 2299 RRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTA 2120
            RRTNPLQM+SDLRK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKN AVTA
Sbjct: 501  RRTNPLQMMSDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTA 560

Query: 2119 VVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLR 1940
            +VSS+I+EPI+DKLV CGM KLDE   SS  KM KVFLNGDWIGVC+D        RC+R
Sbjct: 561  IVSSRIMEPILDKLVSCGMEKLDESPLSSTTKMDKVFLNGDWIGVCADPSSFVESFRCMR 620

Query: 1939 RVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXX 1760
            R K IH QVEIKRDKHQKEVRIF+D GRI+RPLL+V+NLKKI+ LKGG  SF YLMDQ  
Sbjct: 621  RNKVIHAQVEIKRDKHQKEVRIFSDAGRIMRPLLVVDNLKKIKNLKGGSYSFQYLMDQEI 680

Query: 1759 XXXXXXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFAR 1580
                     ED QTAWG+++L   ++    PKY+H EL+ SFL+GLSCGIIPFANHNFAR
Sbjct: 681  IELIGVEEEEDLQTAWGVRHLFVGDKGEPIPKYSHSELELSFLMGLSCGIIPFANHNFAR 740

Query: 1579 RVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDS 1400
            RVLYQ+EKHSQQAIGFST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGRTDYS GRKD 
Sbjct: 741  RVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFKTVIADCLGRTDYSPGRKDD 800

Query: 1399 IARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKR 1220
            +ARPEYFNGQNAIVAVNVHQGYNQEDSLVMN++SLERGMFRTEHFRSYKA+V+NK  + R
Sbjct: 801  VARPEYFNGQNAIVAVNVHQGYNQEDSLVMNRTSLERGMFRTEHFRSYKAEVENKDFTNR 860

Query: 1219 IKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEK 1040
            +K KDKVDFGK +SKKGRVDSLDDDG PYI ASLQ GDI+IGKVAESGEDHSIKLKHTEK
Sbjct: 861  LKPKDKVDFGKTQSKKGRVDSLDDDGLPYISASLQSGDIVIGKVAESGEDHSIKLKHTEK 920

Query: 1039 GMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGI 860
            GMV KV LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFT QGI
Sbjct: 921  GMVQKVILSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGI 980

Query: 859  VPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSR 680
            VPDIVINPHAFPTRQTPGQLLEAALGKGIAC GS R+ATPF+T SVD I +QLHRAGYSR
Sbjct: 981  VPDIVINPHAFPTRQTPGQLLEAALGKGIACGGSARYATPFTTPSVDVITEQLHRAGYSR 1040

Query: 679  WGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFG 500
            WG E+VLNGRTGEMMRSMIFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFG
Sbjct: 1041 WGSEKVLNGRTGEMMRSMIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFG 1100

Query: 499  GVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGP 320
            GVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C+RAANVI+R V GGKK+RGP
Sbjct: 1101 GVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCKRAANVILRPVPGGKKIRGP 1160

Query: 319  YCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            +C FC+S ENI++INVPYGAKLLYQELFS GICLKFETEVC
Sbjct: 1161 FCGFCRSAENIVKINVPYGAKLLYQELFSTGICLKFETEVC 1201


>gb|OAY64687.1| DNA-directed RNA polymerases IV and V subunit 2, partial [Ananas
            comosus]
          Length = 1228

 Score = 1795 bits (4649), Expect = 0.0
 Identities = 879/1140 (77%), Positives = 972/1140 (85%), Gaps = 24/1140 (2%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQDLFDSLGE+TVEP YDPSKKG  AWRHATI++GKV LEKP FW   ND E   LKL
Sbjct: 89   HGLQDLFDSLGEITVEPGYDPSKKGGSAWRHATISFGKVSLEKPVFWSGKNDYEEECLKL 148

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVY-----IRKRVLSDEKRVITM 3200
             PRHARLQNMTYSS +KV+VRVQVY  E+SDK K+G D       + KRV +DEK+ IT+
Sbjct: 149  TPRHARLQNMTYSSQMKVEVRVQVYSHEKSDKAKSGKDQSGKDQSVHKRVWADEKKEITI 208

Query: 3199 GRLPVMVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTV 3020
            GRLPVMVRSN+CWL  L KSDC+FDSGGYFLIKGMEK FIAQEQRCLTRLWV D+PV TV
Sbjct: 209  GRLPVMVRSNLCWLNTLGKSDCLFDSGGYFLIKGMEKTFIAQEQRCLTRLWVTDRPVWTV 268

Query: 3019 SYLSEIKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMI 2840
            SY+SEIKR+RIY+K++E+P  EG +G + IS +FLYAT PIW+MFFALGASSDKE+FEMI
Sbjct: 269  SYISEIKRKRIYIKLLESPKAEGSNGRRVISLYFLYATAPIWLMFFALGASSDKEIFEMI 328

Query: 2839 DLEDCDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYL 2660
            DLEDC A  VNI+LATIK+T+EQFEGFR  DKA E++N  +K++K+PPSESFD YVSKYL
Sbjct: 329  DLEDCSASIVNILLATIKETDEQFEGFRKEDKAREYINEQIKNAKFPPSESFDEYVSKYL 388

Query: 2659 FPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHA 2480
            FP +SGHR KAL LGYMVKCL L+ SGKRKCDNKDDFRNK              AHIRHA
Sbjct: 389  FPGVSGHRQKALSLGYMVKCLLLAFSGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHA 448

Query: 2479 EKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATL 2300
            EKR+VK++QRDL G+R LQ IE Y DASIITNG+NRAFSTG+W HPYK+TER+SGIVATL
Sbjct: 449  EKRMVKTMQRDLYGDRDLQLIERYWDASIITNGINRAFSTGAWCHPYKRTERISGIVATL 508

Query: 2299 RRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTA 2120
            RRTNPLQM+SDLRK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKN AVTA
Sbjct: 509  RRTNPLQMMSDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTA 568

Query: 2119 VVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLR 1940
            +VSS+I+EPI+DKLV CGM KLDE   SS  KM KVFLNGDWIGVC+D        RC+R
Sbjct: 569  IVSSRIMEPILDKLVSCGMEKLDESPLSSTTKMDKVFLNGDWIGVCADPSSFVESFRCMR 628

Query: 1939 RVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXX 1760
            R K IH QVEIKRDKHQKEVRIF+D GRI+RPLL+V+NLKKI+ LKGG  SF YLMDQ  
Sbjct: 629  RNKVIHAQVEIKRDKHQKEVRIFSDAGRIMRPLLVVDNLKKIKNLKGGSYSFQYLMDQEI 688

Query: 1759 XXXXXXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFAR 1580
                     ED QTAWG+++L   ++    PKY+H EL+ SFL+GLSCGIIPFANHNFAR
Sbjct: 689  IELIGVEEEEDLQTAWGVRHLFVGDKGEPIPKYSHSELELSFLMGLSCGIIPFANHNFAR 748

Query: 1579 RVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDS 1400
            RVLYQ+EKHSQQAIGFST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGRTDYS GRKD 
Sbjct: 749  RVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFKTVIADCLGRTDYSPGRKDD 808

Query: 1399 IARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKR 1220
            +ARPEYFNGQNAIVAVNVHQGYNQEDSLVMN++SLERGMFRTEHFRSYKA+V+NK  + R
Sbjct: 809  VARPEYFNGQNAIVAVNVHQGYNQEDSLVMNRTSLERGMFRTEHFRSYKAEVENKDFTNR 868

Query: 1219 IKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEK 1040
            +K KDKVDFGK +SKKGRVDSLDDDG PYI ASLQ GDI+IGKVAESGEDHSIKLKHTEK
Sbjct: 869  LKPKDKVDFGKTQSKKGRVDSLDDDGLPYISASLQSGDIVIGKVAESGEDHSIKLKHTEK 928

Query: 1039 GMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGI 860
            GMV KV LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFT QGI
Sbjct: 929  GMVQKVILSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGI 988

Query: 859  VPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHR----- 695
            VPDIVINPHAFPTRQTPGQLLEAALGKGIAC GS R+ATPF+T SVD I +QLHR     
Sbjct: 989  VPDIVINPHAFPTRQTPGQLLEAALGKGIACGGSARYATPFTTPSVDVITEQLHRRVKFT 1048

Query: 694  --------------AGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRN 557
                          AGYSRWG E+VLNGRTGEMMRSMIFMGPT+YQRLIHMAEDKVKFRN
Sbjct: 1049 LTVICRVKCYVLMEAGYSRWGSEKVLNGRTGEMMRSMIFMGPTFYQRLIHMAEDKVKFRN 1108

Query: 556  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQ 377
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C+
Sbjct: 1109 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCK 1168

Query: 376  RAANVIMRSVAGGKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            RAANVI+R V GGKK+RGP+C FC+S ENI++INVPYGAKLLYQELFS GICLKFETEVC
Sbjct: 1169 RAANVILRPVPGGKKIRGPFCGFCRSAENIVKINVPYGAKLLYQELFSTGICLKFETEVC 1228


>ref|XP_020255590.1| DNA-directed RNA polymerases IV and V subunit 2-like [Asparagus
            officinalis]
          Length = 1192

 Score = 1705 bits (4415), Expect = 0.0
 Identities = 820/1115 (73%), Positives = 948/1115 (85%)
 Frame = -3

Query: 3541 GLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKLL 3362
            GLQ++FDSLGEV VEP YDPSK G G W+HATITYGKVRL KP FW E +  E   LKLL
Sbjct: 79   GLQEIFDSLGEVVVEPGYDPSKGGGGDWQHATITYGKVRLGKPTFWTERSGQETEELKLL 138

Query: 3361 PRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPVM 3182
            P+HARLQNMTYSS +KV+VRVQVY+ E+SDK KTG D +I KRVLSD+K+ IT+G +PVM
Sbjct: 139  PKHARLQNMTYSSKLKVEVRVQVYILEKSDKAKTGKDSHICKRVLSDDKKEITIGSMPVM 198

Query: 3181 VRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSEI 3002
            V+S +CWL  LDKSDC++DSGGYF++KG EK FIAQEQRCLTRLW+ DKPV T S++SE+
Sbjct: 199  VKSKLCWLDTLDKSDCLYDSGGYFIVKGAEKVFIAQEQRCLTRLWITDKPVWTASHISEM 258

Query: 3001 KRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDCD 2822
            K++R+YVK+V+   V+G + GK IS +FLYATMP+WVMFFALGA+SDKEVFEMIDL+ CD
Sbjct: 259  KKKRVYVKLVDASKVDGLNSGKLISIYFLYATMPVWVMFFALGAASDKEVFEMIDLDGCD 318

Query: 2821 AVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNISG 2642
                NI+LATI+D +EQ   FR   ++ ++V++L+K+SK+PP+ESFD YV KYLFP ISG
Sbjct: 319  NNITNIILATIRDADEQCNDFRKAGRSRDYVDSLIKNSKFPPTESFDEYVGKYLFPTISG 378

Query: 2641 HRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIVK 2462
            HR KALFLGY+VKCL L   GKRKCD +DDFRNK              A+IRHAEKR+VK
Sbjct: 379  HREKALFLGYIVKCLLLGCFGKRKCDKRDDFRNKRLDLVGELLGRELWANIRHAEKRMVK 438

Query: 2461 SVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNPL 2282
            ++QRDL+G+R LQ IE Y DASI+TNGLNRAFSTG W HPY KTER SG+VA L+RTN L
Sbjct: 439  AMQRDLSGDRDLQLIERYWDASIVTNGLNRAFSTGQWCHPYIKTERCSGVVANLQRTNAL 498

Query: 2281 QMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSKI 2102
            QM+S LRK+RQQV YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKN +VTA+VSS I
Sbjct: 499  QMMSSLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSSI 558

Query: 2101 LEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEIH 1922
             EP++DKLV CGM KLD++S SSL K +K+FLNGDWIGVCSD  L     R +RR +EI+
Sbjct: 559  NEPVLDKLVSCGMEKLDQISVSSLSKTYKIFLNGDWIGVCSDSRLFVLNFRQMRRAQEIN 618

Query: 1921 PQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXXX 1742
             QVEIK D+HQKEVRIF+D GR+LRPLLIVENLKK++ LKGG+ S+  L+++        
Sbjct: 619  SQVEIKLDQHQKEVRIFSDAGRLLRPLLIVENLKKVKSLKGGISSYQSLVNEGIIELIGV 678

Query: 1741 XXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQA 1562
               EDC+ AWGI+YLL    + +A  YTHCELDPSFLLGLSCGIIPFANHN ARRVL+QA
Sbjct: 679  EEEEDCRAAWGIRYLLQEGSKQAAIPYTHCELDPSFLLGLSCGIIPFANHNLARRVLFQA 738

Query: 1561 EKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARPEY 1382
            +KHS QA+GFST NP IRVDTL HQ+YYPQ+PLFRTV+A+CLGR DYSLG KD ++RPE 
Sbjct: 739  QKHSHQAVGFSTTNPDIRVDTLMHQMYYPQRPLFRTVVADCLGRRDYSLGLKDGMSRPEL 798

Query: 1381 FNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLKDK 1202
            FNGQNAIVAVNVH GYNQEDSLVMN++SLERGMFRTEHFRSYKA+V+NK+++KRIKLKDK
Sbjct: 799  FNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVENKEITKRIKLKDK 858

Query: 1201 VDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVHKV 1022
            V+FGK++SKKGRVDSL+DDGFP+IGA LQ GDI+IGKVAESGEDHS KLKHTEKGMV KV
Sbjct: 859  VEFGKMQSKKGRVDSLEDDGFPWIGACLQTGDIVIGKVAESGEDHSTKLKHTEKGMVQKV 918

Query: 1021 TLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDIVI 842
             LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDIVI
Sbjct: 919  VLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTREGIVPDIVI 978

Query: 841  NPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHERV 662
            NPHAFPTRQTPGQLLEA+LGKGIA  G   +ATPF+T SVD I +QLHR  + RWG ERV
Sbjct: 979  NPHAFPTRQTPGQLLEASLGKGIALGGKITYATPFTTPSVDVIAEQLHRLNFQRWGAERV 1038

Query: 661  LNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGE 482
            LNGRTGE+M++MIF GPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGE
Sbjct: 1039 LNGRTGELMQTMIFTGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGE 1098

Query: 481  MERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNFCQ 302
            MERDCLLAHGAAANLHERLF LSDFSQMH+C  C R ANVI R V+ G K+RGPYC FC+
Sbjct: 1099 MERDCLLAHGAAANLHERLFTLSDFSQMHVCRTCSRFANVIQRVVSNG-KIRGPYCGFCK 1157

Query: 301  SGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            SGEN++RINVPYGAKLL+QELFSMGICLKFETEVC
Sbjct: 1158 SGENVVRINVPYGAKLLFQELFSMGICLKFETEVC 1192


>ref|XP_012703111.1| DNA-directed RNA polymerases IV and V subunit 2 [Setaria italica]
 ref|XP_022684018.1| DNA-directed RNA polymerases IV and V subunit 2 [Setaria italica]
 gb|KQK99160.1| hypothetical protein SETIT_009201mg [Setaria italica]
          Length = 1234

 Score = 1698 bits (4398), Expect = 0.0
 Identities = 814/1116 (72%), Positives = 957/1116 (85%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ LFDSLG+V VEP YDPSKKGSG W+HA I +G+V+LEKP FW   ++++   +  
Sbjct: 124  HGLQKLFDSLGDVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWSGKDEVD---IDF 180

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTY+S IKV+V ++VY  E+SDK+KTGND +++KR   +E   I +GRLPV
Sbjct: 181  KPRHARLQNMTYASRIKVEVTIKVYSLEKSDKSKTGNDDFVQKRDFMNETHWIYIGRLPV 240

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L +SDC+FD+GGYFL+KGMEK FIAQEQRCL+RLW+ D+P  TVS++SE
Sbjct: 241  MVKSNLCLLHNLKESDCLFDAGGYFLVKGMEKVFIAQEQRCLSRLWISDRPCWTVSFMSE 300

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            IKRRRIY+K+VE+   + F G K IS  FLYATMPIW+MFFALG SSDKEVF++ID++D 
Sbjct: 301  IKRRRIYIKLVESTKSDDFSGSKIISISFLYATMPIWLMFFALGISSDKEVFDVIDMQDG 360

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  DKA ++V+ LVK+S++PP+ESFD YV ++LFP+IS
Sbjct: 361  DASVINTISATIKESDELCEGFRKSDKARQYVDELVKNSRFPPAESFDDYVDRFLFPDIS 420

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            GHR KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AHIR AE+R+V
Sbjct: 421  GHRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLARELRAHIRLAERRMV 480

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGLNRAFSTGSW HPYKKTER SGIVATLRRTNP
Sbjct: 481  KAIQRDLNSDRELQDLERYLDASIVTNGLNRAFSTGSWCHPYKKTERCSGIVATLRRTNP 540

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQMISDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA+VSS+
Sbjct: 541  LQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSR 600

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            + +P+++  + CGM+KL+E+   ++ +M K+FLNG+W+G C+D      RLRC+RR   I
Sbjct: 601  VEQPLIESFISCGMSKLNEIPTENIQRMDKIFLNGNWVGCCTDSASFVLRLRCMRRSSLI 660

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
            HPQVEIKRDKHQKEVR+F++ GRILRPLL+VENL KIRK KG   SF  L+ Q       
Sbjct: 661  HPQVEIKRDKHQKEVRVFSEAGRILRPLLVVENLNKIRKPKGRSYSFQELIQQEIIEFIG 720

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E S+  YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ
Sbjct: 721  VEEEEDIQCAWGIRHLFGSEGEISS--YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 778

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARPE 1385
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY++GR+D  ARPE
Sbjct: 779  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDFARPE 838

Query: 1384 YFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLKD 1205
            YFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK ++KR+K+K+
Sbjct: 839  YFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDVTKRLKMKE 898

Query: 1204 KVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVHK 1025
            K+DFGK+ESK+GRVD+LDDDG PYIGASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV K
Sbjct: 899  KIDFGKMESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQK 958

Query: 1024 VTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDIV 845
            V LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT  GIVPDIV
Sbjct: 959  VLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTRDGIVPDIV 1018

Query: 844  INPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHER 665
            INPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF+TASVD I +QLH+AG+S+WG E 
Sbjct: 1019 INPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKAGFSKWGAES 1078

Query: 664  VLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 485
            V+NGRTGE M+SM+FMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
Sbjct: 1079 VINGRTGERMQSMVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 1138

Query: 484  EMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNFC 305
            EMERDCLLAHGAAANLHERLFMLSDFSQMHIC++C+R ANVIMR V GGKK+RGPYC FC
Sbjct: 1139 EMERDCLLAHGAAANLHERLFMLSDFSQMHICQKCERVANVIMRCVPGGKKIRGPYCGFC 1198

Query: 304  QSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            +S ENI+RINVPYGAKLLYQELFSMGICLKFETEVC
Sbjct: 1199 KSSENIVRINVPYGAKLLYQELFSMGICLKFETEVC 1234


>ref|XP_015636222.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Oryza
            sativa Japonica Group]
 dbj|BAS91258.1| Os04g0641000 [Oryza sativa Japonica Group]
          Length = 1252

 Score = 1689 bits (4374), Expect = 0.0
 Identities = 819/1139 (71%), Positives = 948/1139 (83%), Gaps = 23/1139 (2%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 114  HGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKL 173

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V  QVY  E+SDK KTGND +  KR + +E   I +GRLPV
Sbjct: 174  KPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPV 233

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK FIAQEQ+CLTR+WV D+P   VS+LS 
Sbjct: 234  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSP 293

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            I+RRRIY+K++++ N E   GGK IS  FLYA MPIW+MFFALG SSDK++F++I++EDC
Sbjct: 294  IRRRRIYIKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDC 353

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  DKA ++V+ L+K+SK+PP+E FD Y++KYLFP+IS
Sbjct: 354  DACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSIS 413

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AHIRHAE+ +V
Sbjct: 414  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMV 473

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN ER LQ  + Y+DASIITNGLNRAFSTGSW HPYK+ ER +GIVATLRRTNP
Sbjct: 474  KALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNP 533

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQMISDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA VSS+
Sbjct: 534  LQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSR 593

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +  P++D+ + CGMNKL E+    + +M K+FLNGDW+G CSD      RLRC+RR   I
Sbjct: 594  VAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLI 653

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKHQ+EVR+F+D GRILRPLL+VENL KIR+ KG   SF +LM Q       
Sbjct: 654  DPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIG 713

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPK--------------------YTHCELDPSFLLG 1625
                ED ++AWGI+ L  + EE+   K                    YTHCELD SFLLG
Sbjct: 714  VEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLG 773

Query: 1624 LSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIA 1445
            LSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA
Sbjct: 774  LSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIA 833

Query: 1444 ECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHF 1265
            +C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEHF
Sbjct: 834  DCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHF 893

Query: 1264 RSYKADVDNK---QLSKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIG 1094
            R+YKA+V+NK     +KR+K+KDK+DFGK++SK+GRVD+LDDDG PY+GASLQ GDI+IG
Sbjct: 894  RNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIG 953

Query: 1093 KVAESGEDHSIKLKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 914
            KV+ESGEDHSIKLKHTEKGMV +V LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG
Sbjct: 954  KVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 1013

Query: 913  VIGFLETQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFS 734
            V+GFLE+QENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF+
Sbjct: 1014 VVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFT 1073

Query: 733  TASVDDIMDQLHRAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNT 554
            TAS D I DQLH+AG+SRWG E VLNGRTGE M S+IFMGPT+YQRLIHMAEDKVKFRNT
Sbjct: 1074 TASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNT 1133

Query: 553  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQR 374
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMH+C+ C+R
Sbjct: 1134 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCER 1193

Query: 373  AANVIMRSVAGGKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
             ANVIMR V GGKK+RGPYC FC+S ENI+RINVPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1194 VANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1252


>dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]
          Length = 1270

 Score = 1688 bits (4371), Expect = 0.0
 Identities = 818/1139 (71%), Positives = 948/1139 (83%), Gaps = 23/1139 (2%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 132  HGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKL 191

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V  QVY  E+SDK KTGND +  KR + +E   I +GRLPV
Sbjct: 192  KPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPV 251

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK FIAQEQ+CLTR+WV D+P   VS+LS 
Sbjct: 252  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSP 311

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            I+RRRIY+K++++ N E   GGK IS  FLYA MPIW+MFFALG SSDK++F++I++EDC
Sbjct: 312  IRRRRIYIKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDC 371

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  DKA ++V+ L+K+SK+PP+E FD Y++KYLFP+IS
Sbjct: 372  DACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSIS 431

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AHIRHAE+ +V
Sbjct: 432  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMV 491

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN ER LQ  + Y+DASIITNGLNRAFSTGSW HPYK+ ER +GIVATLRRTNP
Sbjct: 492  KALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNP 551

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQMISDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA VSS+
Sbjct: 552  LQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSR 611

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +  P++D+ + CGMNKL E+    + +M K+FLNGDW+G CSD      RLRC+RR   I
Sbjct: 612  VAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLI 671

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKHQ+EVR+F+D GRILRPLL+VENL KIR+ KG   SF +LM Q       
Sbjct: 672  DPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIG 731

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPK--------------------YTHCELDPSFLLG 1625
                ED ++AWGI+ L  + EE+   K                    YTHCELD SFLLG
Sbjct: 732  VEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLG 791

Query: 1624 LSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIA 1445
            LSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA
Sbjct: 792  LSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIA 851

Query: 1444 ECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHF 1265
            +C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNVHQG+NQEDS+VMN++SLERGMFRTEHF
Sbjct: 852  DCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHF 911

Query: 1264 RSYKADVDNK---QLSKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIG 1094
            R+YKA+V+NK     +KR+K+KDK+DFGK++SK+GRVD+LDDDG PY+GASLQ GDI+IG
Sbjct: 912  RNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIG 971

Query: 1093 KVAESGEDHSIKLKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 914
            KV+ESGEDHSIKLKHTEKGMV +V LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG
Sbjct: 972  KVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 1031

Query: 913  VIGFLETQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFS 734
            V+GFLE+QENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF+
Sbjct: 1032 VVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFT 1091

Query: 733  TASVDDIMDQLHRAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNT 554
            TAS D I DQLH+AG+SRWG E VLNGRTGE M S+IFMGPT+YQRLIHMAEDKVKFRNT
Sbjct: 1092 TASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNT 1151

Query: 553  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQR 374
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMH+C+ C+R
Sbjct: 1152 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCER 1211

Query: 373  AANVIMRSVAGGKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
             ANVIMR V GGKK+RGPYC FC+S ENI+RINVPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1212 VANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1270


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score = 1688 bits (4371), Expect = 0.0
 Identities = 818/1139 (71%), Positives = 948/1139 (83%), Gaps = 23/1139 (2%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 178  HGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKL 237

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V  QVY  E+SDK KTGND +  KR + +E   I +GRLPV
Sbjct: 238  KPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPV 297

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK FIAQEQ+CLTR+WV D+P   VS+LS 
Sbjct: 298  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSP 357

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            I+RRRIY+K++++ N E   GGK IS  FLYA MPIW+MFFALG SSDK++F++I++EDC
Sbjct: 358  IRRRRIYIKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDC 417

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  DKA ++V+ L+K+SK+PP+E FD Y++KYLFP+IS
Sbjct: 418  DACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSIS 477

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AHIRHAE+ +V
Sbjct: 478  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMV 537

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN ER LQ  + Y+DASIITNGLNRAFSTGSW HPYK+ ER +GIVATLRRTNP
Sbjct: 538  KALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNP 597

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQMISDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA VSS+
Sbjct: 598  LQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSR 657

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +  P++D+ + CGMNKL E+    + +M K+FLNGDW+G CSD      RLRC+RR   I
Sbjct: 658  VAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLI 717

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKHQ+EVR+F+D GRILRPLL+VENL KIR+ KG   SF +LM Q       
Sbjct: 718  DPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIG 777

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPK--------------------YTHCELDPSFLLG 1625
                ED ++AWGI+ L  + EE+   K                    YTHCELD SFLLG
Sbjct: 778  VEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLG 837

Query: 1624 LSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIA 1445
            LSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA
Sbjct: 838  LSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIA 897

Query: 1444 ECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHF 1265
            +C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNVHQG+NQEDS+VMN++SLERGMFRTEHF
Sbjct: 898  DCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHF 957

Query: 1264 RSYKADVDNK---QLSKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIG 1094
            R+YKA+V+NK     +KR+K+KDK+DFGK++SK+GRVD+LDDDG PY+GASLQ GDI+IG
Sbjct: 958  RNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIG 1017

Query: 1093 KVAESGEDHSIKLKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 914
            KV+ESGEDHSIKLKHTEKGMV +V LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG
Sbjct: 1018 KVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKG 1077

Query: 913  VIGFLETQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFS 734
            V+GFLE+QENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF+
Sbjct: 1078 VVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFT 1137

Query: 733  TASVDDIMDQLHRAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNT 554
            TAS D I DQLH+AG+SRWG E VLNGRTGE M S+IFMGPT+YQRLIHMAEDKVKFRNT
Sbjct: 1138 TASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNT 1197

Query: 553  GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQR 374
            GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMH+C+ C+R
Sbjct: 1198 GPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCER 1257

Query: 373  AANVIMRSVAGGKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
             ANVIMR V GGKK+RGPYC FC+S ENI+RINVPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1258 VANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1316


>ref|XP_002468227.1| DNA-directed RNA polymerases IV and V subunit 2 [Sorghum bicolor]
 gb|EER95225.1| hypothetical protein SORBI_3001G448100 [Sorghum bicolor]
          Length = 1228

 Score = 1682 bits (4355), Expect = 0.0
 Identities = 806/1117 (72%), Positives = 950/1117 (85%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV VEP YDPSKKGSG W+HA I +G+V+LEKP FW   ++   GS+  
Sbjct: 117  HGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKDE---GSVDF 173

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             P HARLQNMTY+S + V+V +QVY  E+SDK+KTGND +++KR   +E   I +G LPV
Sbjct: 174  KPWHARLQNMTYASRLIVEVNIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGLLPV 233

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L +S+C+FD+GGYFL+KGMEK FIAQE RCL RLW++D+P   +S++SE
Sbjct: 234  MVKSNLCLLHSLKESECLFDAGGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSE 293

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            +KRRRIY+K+VE+   E F G K IS  FLYATMP+W++FFALG SSDKE F++ID++DC
Sbjct: 294  MKRRRIYIKLVESTRSEDFSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDC 353

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  DKA ++V+ LVKSS++PP+ESFD Y++++LFP+IS
Sbjct: 354  DASVINTISATIKESDELCEGFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDIS 413

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AH+R AEKR+V
Sbjct: 414  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMV 473

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGL+RAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 474  KAIQRDLNSDRELQDLERYIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNP 533

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA+VSS+
Sbjct: 534  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSR 593

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +++P+++  + CGM+KL+++    + +M K+FLNG+W+G C D      RLRC+RR   I
Sbjct: 594  VVQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLI 653

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKH KEVR+F+D GRILRPLL+VENLKKIRK KG   SF  LM Q       
Sbjct: 654  DPQVEIKRDKHHKEVRVFSDAGRILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIG 713

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E +   YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ
Sbjct: 714  VEEEEDIQCAWGIRHLFES--EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 771

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYS-LGRKDSIARP 1388
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY+  GRKD   RP
Sbjct: 772  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRP 831

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK  +KR+KLK
Sbjct: 832  EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLK 891

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            +K+DFGK ESK+GRVD+LDDDG PYIGASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV 
Sbjct: 892  EKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQ 951

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDI
Sbjct: 952  KVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDI 1011

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIAC+G+ R+ATPF+TASVD I +QLHRAGYSRWG E
Sbjct: 1012 VINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTE 1071

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
             VLNGRTGE M+S+IFMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1072 NVLNGRTGERMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1131

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHG+AANLHERLFMLSDFSQMHIC+ C+R ANV+MRSV+GGKK+RGPYC F
Sbjct: 1132 GEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGF 1191

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            C+S ENI+RINVPYGAKLLYQELFSMGICLKF+TEVC
Sbjct: 1192 CKSSENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1228


>gb|AQK46524.1| DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
 gb|AQK46537.1| DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 1229

 Score = 1678 bits (4346), Expect = 0.0
 Identities = 805/1117 (72%), Positives = 947/1117 (84%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV VEP YDPSKKGSG+W+HA I +G+V+LEKP FW   +++   S+  
Sbjct: 118  HGLQELFDSLGEVIVEPGYDPSKKGSGSWKHAIIKFGRVKLEKPVFWTGKDEV---SVDF 174

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             P HARLQNMTY+S ++V+V +QVY  E+SDK+KTGND +++KR   +E   I +G LPV
Sbjct: 175  KPWHARLQNMTYASRLRVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPV 234

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L +S+C+FD+GGYFL+KGMEK FIAQE RCL RLW+ D+P  T+S++SE
Sbjct: 235  MVKSNLCLLHSLKESECLFDAGGYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSE 294

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            +KRRRIY+K+VE+   E F G K IS  FLYATMP+W++FFALG SSDKE F++ID++DC
Sbjct: 295  MKRRRIYIKLVESTRSEDFSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDC 354

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E   GFR  DKA ++V+ LVKSSK+PP ESFD Y++K+LFP IS
Sbjct: 355  DASVINTISATIKESDELCGGFRKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGIS 414

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AH+R AE+R+V
Sbjct: 415  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMV 474

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGLNRAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 475  KAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNP 534

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVT++VSSK
Sbjct: 535  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSK 594

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +++P+++  + CGMNKL+++    + +M K+FLNG+W+G CSD      RLRC+RR   I
Sbjct: 595  VVQPLIESFISCGMNKLNDIPTEHIQRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLI 654

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKH KEVR+F+D GRILRPLL+VENL KIRK KG   SF  LM Q       
Sbjct: 655  DPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIG 714

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E +   YTHCELDPSF+LGLSCGIIPFANHNFARRVLYQ
Sbjct: 715  VEEEEDIQCAWGIRHLFES--EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQ 772

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYS-LGRKDSIARP 1388
            +EKHSQQAIG+ST NPRIRVDTLSHQLYYPQ+PLF+TVIA+CLGR+D +  GRKD   RP
Sbjct: 773  SEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRP 832

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK  +KR+KLK
Sbjct: 833  EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLK 892

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            +K+DFGK ESK+GRVD+LDDDG PYIGASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV 
Sbjct: 893  EKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQ 952

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT  GIVPDI
Sbjct: 953  KVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDI 1012

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIAC+G+ R+ATPF+TASVD I +QLH+AGYSRWG E
Sbjct: 1013 VINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAE 1072

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
             VLNGRTGE M+S++FMGPT+YQRLIHM+EDKVK+RNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1073 NVLNGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKF 1132

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHG+AANLHERLFMLSDFSQMHIC+ C+R ANV+MRSV GGKK+RGPYC F
Sbjct: 1133 GEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGF 1192

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            C+S ENI+RINVPYGAKLLYQELFSMGICLKFETEVC
Sbjct: 1193 CKSSENIVRINVPYGAKLLYQELFSMGICLKFETEVC 1229


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score = 1675 bits (4339), Expect = 0.0
 Identities = 813/1140 (71%), Positives = 944/1140 (82%), Gaps = 24/1140 (2%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            +GLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 114  YGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVKLEEPVFWAHGYDIDEESLKL 173

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V +QVY  E+SDK KTGND +  K+ + +E   I  GRLPV
Sbjct: 174  KPRHARLQNMTYSSKMKVEVHIQVYSMEKSDKAKTGNDKFSYKKDIINETHYINFGRLPV 233

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK FIAQEQ+CLTR+WV ++P  TVS+LS 
Sbjct: 234  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEERPCWTVSFLSA 293

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            I+RRRIY+K++++   E     K IS  FLYA MPIW+MFFALG +SDK+VF++ID++DC
Sbjct: 294  IRRRRIYIKLIDSTKNED---RKIISISFLYANMPIWLMFFALGITSDKDVFDVIDMQDC 350

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  EGFR  D+A ++V+ L+K SK+PP E FD YV++YLFP IS
Sbjct: 351  DACVINTISATIKESDELCEGFRKSDRARQYVDELIKDSKFPPGEPFDDYVARYLFPGIS 410

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              AHIRHAE+ +V
Sbjct: 411  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMV 470

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ ++ Y+DASIITNGLNRAFSTGSW HPYKK ER +GIVATLRRTNP
Sbjct: 471  KALQRDLNSDRELQELDRYLDASIITNGLNRAFSTGSWCHPYKKNERCAGIVATLRRTNP 530

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQMISDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTAVVSS+
Sbjct: 531  LQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAVVSSR 590

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            + +P++++ + CGMNKL E+    + KM K+FLNGDW+G C+D      RLRC+RR   I
Sbjct: 591  VAQPVINRFISCGMNKLHEIPTEEVPKMDKIFLNGDWVGSCTDPASFVLRLRCMRRSGLI 650

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIK DKHQ+EVR+F+D GRILRPLL+VENL KIR+ KGG  SF  LM Q       
Sbjct: 651  GPQVEIKWDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGGSYSFQSLMQQEIIEFIG 710

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSA---------------------PKYTHCELDPSFLL 1628
                ED ++AWGI++L  +  E +A                       YTHCELD SFLL
Sbjct: 711  VEEEEDTKSAWGIRHLFGSEGEKAALVKTNRTEDAFTIRRDIEEGVSGYTHCELDLSFLL 770

Query: 1627 GLSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVI 1448
            GLSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TV+
Sbjct: 771  GLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVV 830

Query: 1447 AECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEH 1268
            A+C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH
Sbjct: 831  ADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEH 890

Query: 1267 FRSYKADVDNKQL---SKRIKLKDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIII 1097
            FR+YKA+V+NK     +KR+K+KDK+DFGK++SK+GRVD+LDDDG PY+GASLQ GDI+I
Sbjct: 891  FRNYKAEVENKSAPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVI 950

Query: 1096 GKVAESGEDHSIKLKHTEKGMVHKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 917
            GKV+ESGEDHSIKLKHTEKGMV +V LSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK
Sbjct: 951  GKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK 1010

Query: 916  GVIGFLETQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPF 737
            GVIGFLE+QENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF
Sbjct: 1011 GVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPF 1070

Query: 736  STASVDDIMDQLHRAGYSRWGHERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRN 557
            +TAS D I DQLH+AG+SRWG E VLNGRTGE M S+IFMGP +YQRLIHMAEDKVKFRN
Sbjct: 1071 TTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPNFYQRLIHMAEDKVKFRN 1130

Query: 556  TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQ 377
            TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C+
Sbjct: 1131 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCE 1190

Query: 376  RAANVIMRSVAGGKKVRGPYCNFCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            R ANVIMR V GGKK+RGPYC FC+S ENI RINVPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1191 RVANVIMRPVPGGKKIRGPYCGFCRSSENIARINVPYGAKLLYQELFSMGICLRFETEVC 1250


>ref|NP_001338873.1| required to maintain repression 7 [Zea mays]
 gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
            subunit [Zea mays]
 gb|ADI24118.1| RPD2/E2a [Zea mays]
 gb|ONM13141.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13145.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13149.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13152.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13153.1| nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 1229

 Score = 1674 bits (4334), Expect = 0.0
 Identities = 802/1117 (71%), Positives = 948/1117 (84%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV VEP YDPSKKGSG W+HA I +G+V+LEKP FW   ++   GS+  
Sbjct: 118  HGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKDE---GSVDF 174

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             P HARLQNMTY+S + V+V +QVY  E+SDK+KTGND +++KR   +E   I +G LPV
Sbjct: 175  KPWHARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPV 234

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L++S+C+FD+GGYFL+KGMEK FIAQEQRCL RLW+ D+P  T+S++SE
Sbjct: 235  MVKSNLCLLHSLNESECLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSE 294

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            IKRRRIY+K+VE+   E F   K I+  FLYATMP+W++FFALG SSDKEVF+MID++DC
Sbjct: 295  IKRRRIYIKLVESTRSEDFSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDC 354

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK++++  E FR  DKA ++V+ LVKSS++PP+ESFD Y++++LFP+IS
Sbjct: 355  DASVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDIS 414

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              A +R AEKR+V
Sbjct: 415  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMV 474

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGLNRAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 475  KAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNP 534

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA+VSS+
Sbjct: 535  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSR 594

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +++P+++  + CGM+KL+++    + +M K+FLNG+W+G C +      RLRC+RR   I
Sbjct: 595  VMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLI 654

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKH  EVR+FTD GRILRPLL+VENL KIRK KG   SF  LM Q       
Sbjct: 655  DPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIG 714

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E +   YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ
Sbjct: 715  VEEEEDIQCAWGIRHLFES--EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 772

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDY-SLGRKDSIARP 1388
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY S GRK+  ARP
Sbjct: 773  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARP 832

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK  +KR+KLK
Sbjct: 833  EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLK 892

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            +K+DFGK ESK+GRVD+LDDDG PY+GASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV 
Sbjct: 893  EKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQ 952

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDI
Sbjct: 953  KVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDI 1012

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIAC+G+ R+ATPF+TASVD I +QLHRAGYSRWG E
Sbjct: 1013 VINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSE 1072

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
             VLNGRTGE ++S++FMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1073 NVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1132

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHG+AANLHERLF+LSDFSQMHIC+ C+R ANV+MRSV GGKK+RGPYC F
Sbjct: 1133 GEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGF 1192

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            C+S ENI+RINVPYGAKLLYQELFSMGICLKFET+VC
Sbjct: 1193 CKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229


>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score = 1673 bits (4333), Expect = 0.0
 Identities = 818/1166 (70%), Positives = 948/1166 (81%), Gaps = 50/1166 (4%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 178  HGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKL 237

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V  QVY  E+SDK KTGND +  KR + +E   I +GRLPV
Sbjct: 238  KPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPV 297

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEK---------------------------A 3086
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK                            
Sbjct: 298  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKV 357

Query: 3085 FIAQEQRCLTRLWVVDKPVPTVSYLSEIKRRRIYVKVVETPNVEGFHGGKFISFFFLYAT 2906
            FIAQEQ+CLTR+WV D+P   VS+LS I+RRRIY+K++++ N E   GGK IS  FLYA 
Sbjct: 358  FIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGKIISISFLYAN 417

Query: 2905 MPIWVMFFALGASSDKEVFEMIDLEDCDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVN 2726
            MPIW+MFFALG SSDK++F++I++EDCDA  +N + ATIK+++E  EGFR  DKA ++V+
Sbjct: 418  MPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVD 477

Query: 2725 TLVKSSKYPPSESFDGYVSKYLFPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFR 2546
             L+K+SK+PP+E FD Y++KYLFP+ISG+R KALFLGYMVKCL ++ +GKRKCDNKDDFR
Sbjct: 478  ELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFR 537

Query: 2545 NKXXXXXXXXXXXXXXAHIRHAEKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAF 2366
            NK              AHIRHAE+ +VK++QRDLN ER LQ  + Y+DASIITNGLNRAF
Sbjct: 538  NKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAF 597

Query: 2365 STGSWTHPYKKTERLSGIVATLRRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGK 2186
            STGSW HPYK+ ER +GIVATLRRTNPLQMISDLRK+RQ+V YAGKAGDARYPNPSYWGK
Sbjct: 598  STGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGK 657

Query: 2185 LCFLSTPDGENCGLVKNFAVTAVVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFL 2006
            LCF+STPDGENCGLVKN AVTA VSS++  P++D+ + CGMNKL E+    + +M K+FL
Sbjct: 658  LCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFL 717

Query: 2005 NGDWIGVCSDMGLLANRLRCLRRVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVEN 1826
            NGDW+G CSD      RLRC+RR   I PQVEIKRDKHQ+EVR+F+D GRILRPLL+VEN
Sbjct: 718  NGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVEN 777

Query: 1825 LKKIRKLKGGVLSFGYLMDQXXXXXXXXXXXEDCQTAWGIKYLLAANEESSAPK------ 1664
            L KIR+ KG   SF +LM Q           ED ++AWGI+ L  + EE+   K      
Sbjct: 778  LNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAED 837

Query: 1663 --------------YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFST 1526
                          YTHCELD SFLLGLSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST
Sbjct: 838  VFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYST 897

Query: 1525 VNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNV 1346
             NP IRVDTLSHQLYYPQ+PLF+TVIA+C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNV
Sbjct: 898  TNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNV 957

Query: 1345 HQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNK---QLSKRIKLKDKVDFGKVESK 1175
            HQG+NQEDS+VMN++SLERGMFRTEHFR+YKA+V+NK     +KR+K+KDK+DFGK++SK
Sbjct: 958  HQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSK 1017

Query: 1174 KGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVHKVTLSANDEGK 995
            +GRVD+LDDDG PY+GASLQ GDI+IGKV+ESGEDHSIKLKHTEKGMV +V LSANDEGK
Sbjct: 1018 RGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGK 1077

Query: 994  NFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDIVINPHAFPTRQ 815
            NFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFT QGIVPDIVINPHAFPTRQ
Sbjct: 1078 NFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQ 1137

Query: 814  TPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHERVLNGRTGEMM 635
            TPGQLLEAALGKGIA  G+ R+ATPF+TAS D I DQLH+AG+SRWG E VLNGRTGE M
Sbjct: 1138 TPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERM 1197

Query: 634  RSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH 455
             S+IFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH
Sbjct: 1198 HSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH 1257

Query: 454  GAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNFCQSGENIIRIN 275
            GAAANLHERLFMLSDFSQMH+C+ C+R ANVIMR V GGKK+RGPYC FC+S ENI+RIN
Sbjct: 1258 GAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRIN 1317

Query: 274  VPYGAKLLYQELFSMGICLKFETEVC 197
            VPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1318 VPYGAKLLYQELFSMGICLRFETEVC 1343


>gb|PAN40366.1| hypothetical protein PAHAL_G02501 [Panicum hallii]
 gb|PAN40368.1| hypothetical protein PAHAL_G02501 [Panicum hallii]
          Length = 1233

 Score = 1672 bits (4331), Expect = 0.0
 Identities = 806/1116 (72%), Positives = 949/1116 (85%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV V+P YDPSKK SG+W+HA I +G+V+LEKP F    ++++   + L
Sbjct: 124  HGLQELFDSLGEVIVDPGYDPSKKVSGSWKHAIIKFGRVKLEKPVFLSGKDEVD---IDL 180

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTY+S IKV+V +QVY  E+SDK+KTGND +++KR   +E   I +GRLPV
Sbjct: 181  KPRHARLQNMTYASKIKVEVTIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIYIGRLPV 240

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+S++C L    +SDC+FD+GGYFL+KGMEK FIAQEQRCL+RLW+ D+P  TVS++SE
Sbjct: 241  MVKSDLCLLHSHKESDCLFDAGGYFLVKGMEKVFIAQEQRCLSRLWIADRPCWTVSFMSE 300

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            IKRRRIY+K+VE+   E F G K IS  FLYATMPIW+MFFALG SSDKE F++ID++DC
Sbjct: 301  IKRRRIYIKLVESTKSEDFSGSKIISISFLYATMPIWLMFFALGISSDKEAFDVIDMQDC 360

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  VN + ATIK+++   EGFR  DKA ++V+ LVK+S++PP+ESFD YV K+LFP+IS
Sbjct: 361  DASVVNTISATIKESDGLCEGFRKSDKARQYVDKLVKNSRFPPAESFDDYVDKFLFPDIS 420

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++  GKRKCDNKDDFRNK              AHIRHAE+R++
Sbjct: 421  GYRNKALFLGYMVKCLLMAFIGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERRMI 480

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +  Y+DASI+TNGLNRAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 481  KAIQRDLNSDRELQDLARYLDASIVTNGLNRAFSTGSWCHPYKRNERCSGIVATLRRTNP 540

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYWGKLCF+STPDGENCGLVKN AVTA+VSS+
Sbjct: 541  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSR 600

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +++P+++  + CGM+KL+E+   S+ +M K+FLNG+W+G C+D      RLRC+RR   I
Sbjct: 601  VVQPLIESFISCGMSKLNEIPTESIQRMDKIFLNGNWVGSCTDSASFVLRLRCMRRSSLI 660

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKHQKEVR+F+D GR+LRPLL+VENL KIRK KG   SF  LM Q       
Sbjct: 661  DPQVEIKRDKHQKEVRVFSDAGRLLRPLLVVENLNKIRKPKGRQYSFQELMQQEIIEFIG 720

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E S+  YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ
Sbjct: 721  VEEEEDIQCAWGIRHLFGSEGEISS--YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 778

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARPE 1385
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY++GR+D  +RPE
Sbjct: 779  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDFSRPE 838

Query: 1384 YFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLKD 1205
            YFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK  +KR+K K+
Sbjct: 839  YFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLK-KE 897

Query: 1204 KVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVHK 1025
            K+DF K+ESK+G VD+LDDDG PYIGASLQ  DIIIGKV+ESGEDHSIKLKHTEKGMV K
Sbjct: 898  KIDFAKMESKRGCVDNLDDDGLPYIGASLQTNDIIIGKVSESGEDHSIKLKHTEKGMVQK 957

Query: 1024 VTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDIV 845
            V LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDIV
Sbjct: 958  VLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIV 1017

Query: 844  INPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHER 665
            INPHAFPTRQTPGQLLEAALGKGIA  G+ R+ATPF+TASVD I +QLH+ G+S+WG E 
Sbjct: 1018 INPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKFGFSKWGAES 1077

Query: 664  VLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 485
            V+NGRTGE M+S++FMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
Sbjct: 1078 VINGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 1137

Query: 484  EMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNFC 305
            EMERDCLLAHGAAANLHERLFMLSDFSQMHIC+ C+R ANVIMR V GGKK+RGPYC FC
Sbjct: 1138 EMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCERVANVIMRCVPGGKKIRGPYCGFC 1197

Query: 304  QSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            +S ENI+RINVPYGAKLLYQELFSMGICLKFETEVC
Sbjct: 1198 KSSENIVRINVPYGAKLLYQELFSMGICLKFETEVC 1233


>emb|CAJ86030.1| B0414F07.4 [Oryza sativa]
          Length = 1343

 Score = 1671 bits (4328), Expect = 0.0
 Identities = 818/1166 (70%), Positives = 947/1166 (81%), Gaps = 50/1166 (4%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEVTVEPSYDPS +G G WRHA I +G+V+LE+P FW    DI+  SLKL
Sbjct: 178  HGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKL 237

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             PRHARLQNMTYSS +KV+V  QVY  E+SDK KTGND +  KR + +E   I +GRLPV
Sbjct: 238  KPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPV 297

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEK---------------------------A 3086
            MV SN+CWL  L +SDC FDSGGYFLIKGMEK                            
Sbjct: 298  MVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKV 357

Query: 3085 FIAQEQRCLTRLWVVDKPVPTVSYLSEIKRRRIYVKVVETPNVEGFHGGKFISFFFLYAT 2906
            FIAQEQ+CLTR+WV D+P   VS+LS I+RRRIY+K++++ N E   GGK IS  FLYA 
Sbjct: 358  FIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGKIISISFLYAN 417

Query: 2905 MPIWVMFFALGASSDKEVFEMIDLEDCDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVN 2726
            MPIW+MFFALG SSDK++F++I++EDCDA  +N + ATIK+++E  EGFR  DKA ++V+
Sbjct: 418  MPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVD 477

Query: 2725 TLVKSSKYPPSESFDGYVSKYLFPNISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFR 2546
             L+K+SK+PP+E FD Y++KYLFP+ISG+R KALFLGYMVKCL ++ +GKRKCDNKDDFR
Sbjct: 478  ELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFR 537

Query: 2545 NKXXXXXXXXXXXXXXAHIRHAEKRIVKSVQRDLNGERGLQAIECYMDASIITNGLNRAF 2366
            NK              AHIRHAE+ +VK++QRDLN ER LQ  + Y+DASIITNGLNRAF
Sbjct: 538  NKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAF 597

Query: 2365 STGSWTHPYKKTERLSGIVATLRRTNPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGK 2186
            STGSW HPYK+ ER +GIVATLRRTNPLQMISDLRK+RQ+V YAGKAGDARYPNPSYWGK
Sbjct: 598  STGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGK 657

Query: 2185 LCFLSTPDGENCGLVKNFAVTAVVSSKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFL 2006
            LCF+STPDGENCGLVKN AVTA VSS++  P++D+ + CGMNKL E+    + +M K+FL
Sbjct: 658  LCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFL 717

Query: 2005 NGDWIGVCSDMGLLANRLRCLRRVKEIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVEN 1826
            NGDW+G CSD      RLRC+RR   I PQVEIK DKHQ+EVR+F+D GRILRPLL+VEN
Sbjct: 718  NGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDAGRILRPLLVVEN 777

Query: 1825 LKKIRKLKGGVLSFGYLMDQXXXXXXXXXXXEDCQTAWGIKYLLAANEESSAPK------ 1664
            L KIR+ KG   SF +LM Q           ED ++AWGI+ L  + EE+   K      
Sbjct: 778  LNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAED 837

Query: 1663 --------------YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFST 1526
                          YTHCELD SFLLGLSCGIIPFANHNFARRVLYQ+EKHSQQAIG+ST
Sbjct: 838  VFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYST 897

Query: 1525 VNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIARPEYFNGQNAIVAVNV 1346
             NP IRVDTLSHQLYYPQ+PLF+TVIA+C+GR++Y+ GRKD  ARPEYFNGQNAIVAVNV
Sbjct: 898  TNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNV 957

Query: 1345 HQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQL---SKRIKLKDKVDFGKVESK 1175
            HQG+NQEDSLVMN++SLERGMFRTEHFR+YKA+V+NK     +KR+K+KDK+DFGK++SK
Sbjct: 958  HQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSK 1017

Query: 1174 KGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVHKVTLSANDEGK 995
            +GRVD+LDDDG PY+GASLQ GDI+IGKV+ESGEDHSIKLKHTEKGMV +V LSANDEGK
Sbjct: 1018 RGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGK 1077

Query: 994  NFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDIVINPHAFPTRQ 815
            NFAVVTLRQVRSPCLGDKFSSMHGQKGV+GFLE+QENFPFT QGIVPDIVINPHAFPTRQ
Sbjct: 1078 NFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQ 1137

Query: 814  TPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHERVLNGRTGEMM 635
            TPGQLLEAALGKGIA  G+ R+ATPF+TAS D I DQLH+AG+SRWG E VLNGRTGE M
Sbjct: 1138 TPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERM 1197

Query: 634  RSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH 455
             S+IFMGPT+YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH
Sbjct: 1198 HSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAH 1257

Query: 454  GAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNFCQSGENIIRIN 275
            GAAANLHERLFMLSDFSQMH+C+ C+R ANVIMR V GGKK+RGPYC FC+S ENI+RIN
Sbjct: 1258 GAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRIN 1317

Query: 274  VPYGAKLLYQELFSMGICLKFETEVC 197
            VPYGAKLLYQELFSMGICL+FETEVC
Sbjct: 1318 VPYGAKLLYQELFSMGICLRFETEVC 1343


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score = 1670 bits (4326), Expect = 0.0
 Identities = 801/1117 (71%), Positives = 947/1117 (84%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV VEP YDPSKKGSG W+HA I +G+V+LEKP FW   ++   GS+  
Sbjct: 118  HGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKDE---GSVDF 174

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             P HARLQNMTY+S + V+V +QVY  E+SDK+KTGND +++KR   +E   I +G LPV
Sbjct: 175  KPWHARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPV 234

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L++S+C+FD+GGYFL+KGMEK FIAQEQRCL RLW+ D+P  T+S++SE
Sbjct: 235  MVKSNLCLLHSLNESECLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSE 294

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            IKRRRIY+K+VE+   E F   K I+  FLYATMP+W++FFALG SSDKEVF+MID++DC
Sbjct: 295  IKRRRIYIKLVESTRSEDFSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDC 354

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK++++  E FR  DKA ++V+ LVKSS++PP+ESFD Y++++LFP+IS
Sbjct: 355  DASVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDIS 414

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KALFLGYMVKCL ++ +GKRKCDNKDDFRNK              A +R AEKR+V
Sbjct: 415  GNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMV 474

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGLNRAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 475  KAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNP 534

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYW KLCF+STPDGENCGLVKN AVTA+VSS+
Sbjct: 535  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSR 594

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            +++P+++  + CGM+KL+++    + +M K+FLNG+W+G C +      RLRC+RR   I
Sbjct: 595  VMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLI 654

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKH  EVR+FTD GRILRPLL+VENL KIRK KG   SF  LM Q       
Sbjct: 655  DPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIG 714

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E +   YTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ
Sbjct: 715  VEEEEDIQCAWGIRHLFES--EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 772

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDY-SLGRKDSIARP 1388
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY S GRK+  ARP
Sbjct: 773  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARP 832

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYKADV+NK  +KR+KLK
Sbjct: 833  EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLK 892

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            +K+DFGK ESK+GRVD+LDDDG PY+GASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV 
Sbjct: 893  EKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQ 952

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDI
Sbjct: 953  KVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDI 1012

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIAC+G+ R+ATPF+TASVD I +QLHRAGYSRWG E
Sbjct: 1013 VINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSE 1072

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
             VLNGRTGE ++S++FMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1073 NVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1132

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHG+AANLHERLF+LSDFSQMHIC+ C+R ANV+MRSV GGKK+RGPYC F
Sbjct: 1133 GEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGF 1192

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            C+S ENI+RINVPYGAKLLYQELFSMGICLKFET+VC
Sbjct: 1193 CKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229


>ref|XP_020692708.1| DNA-directed RNA polymerases IV and V subunit 2-like [Dendrobium
            catenatum]
 gb|PKU59764.1| DNA-directed RNA polymerase D subunit 2a [Dendrobium catenatum]
          Length = 1214

 Score = 1669 bits (4323), Expect = 0.0
 Identities = 818/1117 (73%), Positives = 926/1117 (82%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3547 EHGLQDLFDSLGEVTVEPSYDPSK-KGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSL 3371
            ++GLQDLFDSLGEV VEP Y+P   KG GAW+HAT+++GKVRLEKP FW E ND+E   L
Sbjct: 99   KNGLQDLFDSLGEVAVEPDYNPQDAKGDGAWKHATVSFGKVRLEKPVFWVEKNDLEEQEL 158

Query: 3370 KLLPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRL 3191
            KL P+HARLQNMTYSS +KV VRVQVYV + SDK KTG D  + KRV+ D++  I +GRL
Sbjct: 159  KLTPKHARLQNMTYSSQMKVKVRVQVYVHQVSDKAKTGQDAGVHKRVVDDKESEIVLGRL 218

Query: 3190 PVMVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYL 3011
            PVMVRS++CWL   DK+DC FD GGYFLIKGMEK FIAQEQRC+TRLW+ DKP  T  Y+
Sbjct: 219  PVMVRSDLCWLHSQDKNDCFFDPGGYFLIKGMEKTFIAQEQRCMTRLWITDKPCWTAQYM 278

Query: 3010 SEIKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLE 2831
            SE+KRRR+Y+K++E+   EG  G K IS +FLYATMPIW+MFFALG SSDKEVFEM+DLE
Sbjct: 279  SEMKRRRVYIKLLESTKAEGNSGVKMISLYFLYATMPIWIMFFALGVSSDKEVFEMMDLE 338

Query: 2830 DCDAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPN 2651
                  VN++L TI+D +E  EGFR  DKA E VN L+K +K+PP+ESFD Y+ KYLFP 
Sbjct: 339  GTSTDVVNMILVTIRDADEMCEGFRRGDKAREFVNKLIKDAKFPPTESFDEYIDKYLFPG 398

Query: 2650 ISGHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKR 2471
            I+G R KALFLGYM KCL LS  GKRKCDNKDDFRNK              +HIRHAE+R
Sbjct: 399  ITGLRQKALFLGYMAKCLLLSYMGKRKCDNKDDFRNKRLELAGKLLSRELWSHIRHAERR 458

Query: 2470 IVKSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRT 2291
            +VK++QRDLNG+  LQ IE Y+D+SIITNGLNRAFSTG W HPYK+TER +GIVATLRRT
Sbjct: 459  MVKAMQRDLNGDDELQFIERYLDSSIITNGLNRAFSTGQWCHPYKRTERTAGIVATLRRT 518

Query: 2290 NPLQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVS 2111
            NPLQ+ISDLRK+RQ V YAGKAGDARYPNPSY+G+LCFLSTPDGENCGLVKN A+TA+VS
Sbjct: 519  NPLQLISDLRKTRQSVLYAGKAGDARYPNPSYFGRLCFLSTPDGENCGLVKNLAITALVS 578

Query: 2110 SKILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVK 1931
             K  E I++KL+ CGM+KL+    SSL K  KV LNG+WIGVC D  L  ++ +  RR  
Sbjct: 579  LKKSESIIEKLISCGMDKLEGAPFSSLSKRIKVLLNGEWIGVCRDAELFVSKFKQRRRAG 638

Query: 1930 EIHPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXX 1751
            +IHPQVEIKRD+ QKEVRIF+D GRILRPL+IVENLK + K KGG  SF  LMD      
Sbjct: 639  QIHPQVEIKRDEQQKEVRIFSDAGRILRPLVIVENLKNVNKFKGGFTSFQSLMDAKIIEL 698

Query: 1750 XXXXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVL 1571
                  EDC+TAWGIKYL   +E+     YTHCELD SFLL LSCGIIPFANHNFARRVL
Sbjct: 699  IGVEEEEDCRTAWGIKYLYKKDEKQPIVNYTHCELDLSFLLALSCGIIPFANHNFARRVL 758

Query: 1570 YQAEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYSLGRKDSIAR 1391
            YQAEKHSQQAIGFST NP IRVDTL+HQ+YYPQKPLFRT+ AECLGR DY LG K    R
Sbjct: 759  YQAEKHSQQAIGFSTTNPDIRVDTLTHQMYYPQKPLFRTLTAECLGRPDYCLG-KGHFVR 817

Query: 1390 PEYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKL 1211
            PE FNGQNAIVAVNVHQGYNQEDSLVMN++SL+RG+FRTEHFRSYKADVDNK+ S R+K 
Sbjct: 818  PELFNGQNAIVAVNVHQGYNQEDSLVMNEASLQRGLFRTEHFRSYKADVDNKENSVRLKP 877

Query: 1210 KDKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMV 1031
            KDKVDFGK++SKKGRVDSL+DDG PY+GASL  GDI+IGKVAESGEDH +KLKHTEKGMV
Sbjct: 878  KDKVDFGKMQSKKGRVDSLEDDGLPYVGASLNSGDIVIGKVAESGEDHGVKLKHTEKGMV 937

Query: 1030 HKVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPD 851
             KV LS+NDEGKNFAVVTLRQVRSP LGDKFSSMHGQKGVIG LE QENFPFT QGIVPD
Sbjct: 938  QKVLLSSNDEGKNFAVVTLRQVRSPRLGDKFSSMHGQKGVIGLLEHQENFPFTRQGIVPD 997

Query: 850  IVINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGH 671
            IVINPHAFPTRQTPGQLLEAALGKGIAC GS  +ATPFST SVD I DQL R+G+ RWG 
Sbjct: 998  IVINPHAFPTRQTPGQLLEAALGKGIACGGSATYATPFSTPSVDIIYDQLQRSGFCRWGS 1057

Query: 670  ERVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVK 491
            E+V+NGRTGE M+SMIFMGPT+YQRLIHMAEDKVK+RNTGPVHPLTRQPVADRKR+GGVK
Sbjct: 1058 EKVINGRTGEFMQSMIFMGPTFYQRLIHMAEDKVKYRNTGPVHPLTRQPVADRKRYGGVK 1117

Query: 490  FGEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCN 311
            FGEMERDCLLAHGAAANL+ER+F LSDFS MHIC+ C+RAANVI R V GG+K+RGPYC 
Sbjct: 1118 FGEMERDCLLAHGAAANLYERMFTLSDFSHMHICQTCKRAANVIQRPVLGGRKIRGPYCV 1177

Query: 310  FCQSGENIIRINVPYGAKLLYQELFSMGICLKFETEV 200
            FC+S ENI+RINVPYGAKLLYQELFSMGICLKFETE+
Sbjct: 1178 FCKSAENIVRINVPYGAKLLYQELFSMGICLKFETEL 1214


>ref|XP_002447199.1| DNA-directed RNA polymerases IV and V subunit 2 [Sorghum bicolor]
 gb|EES11527.1| hypothetical protein SORBI_3006G236000 [Sorghum bicolor]
 gb|KXG27149.2| hypothetical protein SORBI_3006G236000 [Sorghum bicolor]
          Length = 1239

 Score = 1668 bits (4319), Expect = 0.0
 Identities = 800/1117 (71%), Positives = 943/1117 (84%), Gaps = 1/1117 (0%)
 Frame = -3

Query: 3544 HGLQDLFDSLGEVTVEPSYDPSKKGSGAWRHATITYGKVRLEKPEFWPESNDIEGGSLKL 3365
            HGLQ+LFDSLGEV VEP YDPSKKGSG W+HA I +G+V+LEKP FW   ++   GS+  
Sbjct: 128  HGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKDE---GSVDF 184

Query: 3364 LPRHARLQNMTYSSPIKVDVRVQVYVQERSDKTKTGNDVYIRKRVLSDEKRVITMGRLPV 3185
             P HARLQNMTY+S +KV+V +QVY  E+SDK+KTGN+ +++KR   +E   I +G LPV
Sbjct: 185  KPWHARLQNMTYASRLKVEVTIQVYSLEKSDKSKTGNEGFVQKRNFMNETHWIFIGLLPV 244

Query: 3184 MVRSNMCWLTILDKSDCIFDSGGYFLIKGMEKAFIAQEQRCLTRLWVVDKPVPTVSYLSE 3005
            MV+SN+C L  L +S+C+FD+GGYFL+KGMEK FIAQEQRCL RLWV D+P   +S++ E
Sbjct: 245  MVKSNLCLLHSLKESECLFDAGGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHE 304

Query: 3004 IKRRRIYVKVVETPNVEGFHGGKFISFFFLYATMPIWVMFFALGASSDKEVFEMIDLEDC 2825
            IKRRRIY+K+VE+   E F G K IS  FLYATMP+W++FFALG SSDKE F++ID++DC
Sbjct: 305  IKRRRIYIKLVESTRSEDFSGSKVISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDC 364

Query: 2824 DAVTVNIMLATIKDTEEQFEGFRNVDKAIEHVNTLVKSSKYPPSESFDGYVSKYLFPNIS 2645
            DA  +N + ATIK+++E  +GFR  DKA ++V+ LVKSS++PP+ESFD YV+++LFP+I+
Sbjct: 365  DASVINTISATIKESDELCKGFRKSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDIN 424

Query: 2644 GHRPKALFLGYMVKCLFLSISGKRKCDNKDDFRNKXXXXXXXXXXXXXXAHIRHAEKRIV 2465
            G+R KA FLGYMVKCL ++ +GKRKCDNKDDFRNK              A +R  E+R+V
Sbjct: 425  GNRNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMV 484

Query: 2464 KSVQRDLNGERGLQAIECYMDASIITNGLNRAFSTGSWTHPYKKTERLSGIVATLRRTNP 2285
            K++QRDLN +R LQ +E Y+DASI+TNGLNRAFSTGSW HPYK+ ER SGIVATLRRTNP
Sbjct: 485  KAIQRDLNNDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNP 544

Query: 2284 LQMISDLRKSRQQVTYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNFAVTAVVSSK 2105
            LQM+SDLRK+RQ+V YAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKN AVTA+VSS+
Sbjct: 545  LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSR 604

Query: 2104 ILEPIMDKLVDCGMNKLDELSPSSLCKMHKVFLNGDWIGVCSDMGLLANRLRCLRRVKEI 1925
            + +P+++  + CGM+KL+++    + +M K+FLNG+W+G C D      RLRC+RR   I
Sbjct: 605  VGQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMI 664

Query: 1924 HPQVEIKRDKHQKEVRIFTDPGRILRPLLIVENLKKIRKLKGGVLSFGYLMDQXXXXXXX 1745
             PQVEIKRDKH KEVR+F+D GRILRPLL+VENL KIRK KG   SF  LM Q       
Sbjct: 665  DPQVEIKRDKHHKEVRVFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIG 724

Query: 1744 XXXXEDCQTAWGIKYLLAANEESSAPKYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQ 1565
                ED Q AWGI++L  +  E +   YTHCELDPSFL+GLSCGIIPFANHNFARRVLYQ
Sbjct: 725  VEEEEDIQCAWGIRHLFES--EGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQ 782

Query: 1564 AEKHSQQAIGFSTVNPRIRVDTLSHQLYYPQKPLFRTVIAECLGRTDYS-LGRKDSIARP 1388
            +EKHSQQAIG+ST NP IRVDTLSHQLYYPQ+PLF+TVIA+CLGR+DY+  GRKD   RP
Sbjct: 783  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRP 842

Query: 1387 EYFNGQNAIVAVNVHQGYNQEDSLVMNKSSLERGMFRTEHFRSYKADVDNKQLSKRIKLK 1208
            EYFNGQNAIVAVNVHQG+NQEDSLVMN++SLERGMFRTEH RSYK DV+NK  +KR+KLK
Sbjct: 843  EYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKTDVENKDGTKRLKLK 902

Query: 1207 DKVDFGKVESKKGRVDSLDDDGFPYIGASLQCGDIIIGKVAESGEDHSIKLKHTEKGMVH 1028
            +K+DFGK ESK+GRVD+LDDDG PYIGASLQ  DI+IGKV+ESGEDHSIKLKHTEKGMV 
Sbjct: 903  EKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQ 962

Query: 1027 KVTLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLETQENFPFTCQGIVPDI 848
            KV LSANDEGKNFAVVTLRQVR+PCLGDKFSSMHGQKGV+GFLE+QENFPFT +GIVPDI
Sbjct: 963  KVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDI 1022

Query: 847  VINPHAFPTRQTPGQLLEAALGKGIACEGSTRHATPFSTASVDDIMDQLHRAGYSRWGHE 668
            VINPHAFPTRQTPGQLLEAALGKGIAC+G+ R+ATPF+TASVD I +QLH+AGYSRWG E
Sbjct: 1023 VINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAE 1082

Query: 667  RVLNGRTGEMMRSMIFMGPTYYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 488
             VLNGRTGE M+S++FMGPT+YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1083 NVLNGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1142

Query: 487  GEMERDCLLAHGAAANLHERLFMLSDFSQMHICEQCQRAANVIMRSVAGGKKVRGPYCNF 308
            GEMERDCLLAHG+AANLHERLFMLSDFSQMHIC+ C+R ANV+MRSV GGKK+RGPYC F
Sbjct: 1143 GEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGF 1202

Query: 307  CQSGENIIRINVPYGAKLLYQELFSMGICLKFETEVC 197
            C+S ENI+RINVPYGAKLLYQELFSMGICLKF+TEVC
Sbjct: 1203 CKSSENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1239