BLASTX nr result
ID: Cheilocostus21_contig00012488
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00012488
(2010 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008794999.1| PREDICTED: LOW QUALITY PROTEIN: glycine-rich... 61 1e-08
ref|XP_010920671.1| PREDICTED: glycine-rich RNA-binding protein ... 60 2e-08
gb|OAY72142.1| Glycine-rich RNA-binding protein [Ananas comosus] 60 4e-08
ref|XP_020086410.1| glycine-rich RNA-binding protein 6, mitochon... 60 4e-08
gb|OVA03527.1| RNA recognition motif domain [Macleaya cordata] 62 6e-08
ref|XP_009404612.1| PREDICTED: 30 kDa ribonucleoprotein, chlorop... 60 1e-07
gb|PKA49012.1| 29 kDa ribonucleoprotein A, chloroplastic [Aposta... 60 1e-07
ref|XP_020273175.1| glycine-rich RNA-binding protein 2, mitochon... 56 2e-07
ref|XP_022143719.1| organelle RRM domain-containing protein 2, m... 58 2e-07
ref|XP_022574960.1| organelle RRM domain-containing protein 2, m... 61 5e-07
ref|XP_010260092.1| PREDICTED: glycine-rich RNA-binding protein ... 58 6e-07
ref|NP_001325085.1| RNA-binding (RRM/RBD/RNP motifs) family prot... 60 6e-07
ref|XP_015968056.1| glycine-rich RNA-binding protein 6, mitochon... 60 7e-07
gb|KFK36640.1| hypothetical protein AALP_AA4G151100 [Arabis alpina] 60 7e-07
ref|XP_024003988.1| organelle RRM domain-containing protein 2, m... 60 7e-07
ref|XP_022972736.1| organelle RRM domain-containing protein 2, m... 57 8e-07
ref|XP_015941307.1| glycine-rich RNA-binding protein 6, mitochon... 59 9e-07
ref|XP_018438057.1| PREDICTED: glycine-rich RNA-binding protein ... 59 1e-06
ref|XP_006295200.1| organelle RRM domain-containing protein 2, m... 59 1e-06
ref|XP_010653445.1| PREDICTED: glycine-rich RNA-binding protein ... 56 2e-06
>ref|XP_008794999.1| PREDICTED: LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 6,
mitochondrial [Phoenix dactylifera]
Length = 159
Score = 61.2 bits (147), Expect(2) = 1e-08
Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KV+ R +GFVR ATIE A KA++G+NAKFLDGWV FVDPAK R P P
Sbjct: 83 KVVTDRVSGRSKGFGFVRFATIEEADKARHGMNAKFLDGWVXFVDPAKPREPKPP 137
Score = 29.3 bits (64), Expect(2) = 1e-08
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 549 EAKSTKPP-C*AQEAGIRTNKTNMWCG 472
E K +PP E GIRTNKT WCG
Sbjct: 133 EPKPPRPPEPEPSETGIRTNKTIGWCG 159
>ref|XP_010920671.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial
[Elaeis guineensis]
Length = 160
Score = 60.5 bits (145), Expect(2) = 2e-08
Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R + FVR ATIE A KA++G+NAKFLDGWV+FVDPAK R P P
Sbjct: 84 KVITDRVSGRSKGFAFVRYATIEEADKARHGMNAKFLDGWVIFVDPAKPREPKPP 138
Score = 29.3 bits (64), Expect(2) = 2e-08
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -1
Query: 552 SEAKSTKPPC*A----QEAGIRTNKTNMWCG 472
++ + KPP A E GIRTNKT WCG
Sbjct: 130 AKPREPKPPRPAAPEPSETGIRTNKTIGWCG 160
>gb|OAY72142.1| Glycine-rich RNA-binding protein [Ananas comosus]
Length = 169
Score = 60.1 bits (144), Expect(2) = 4e-08
Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFVR ATIE A KA++G+NAKFLDGWV+FVDPAK R P
Sbjct: 93 KVITDRASGRSKGFGFVRYATIEEADKARHGMNAKFLDGWVIFVDPAKPREQKPP 147
Score = 28.5 bits (62), Expect(2) = 4e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 546 AKSTKPPC*AQEAGIRTNKTNMWCG 472
A ++PP E+G RTNKT WCG
Sbjct: 149 APQSEPP----ESGFRTNKTIGWCG 169
>ref|XP_020086410.1| glycine-rich RNA-binding protein 6, mitochondrial [Ananas comosus]
Length = 159
Score = 60.1 bits (144), Expect(2) = 4e-08
Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFVR ATIE A KA++G+NAKFLDGWV+FVDPAK R P
Sbjct: 83 KVITDRASGRSKGFGFVRYATIEEADKARHGMNAKFLDGWVIFVDPAKPREQKPP 137
Score = 28.5 bits (62), Expect(2) = 4e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 546 AKSTKPPC*AQEAGIRTNKTNMWCG 472
A ++PP E+G RTNKT WCG
Sbjct: 139 APQSEPP----ESGFRTNKTIGWCG 159
>gb|OVA03527.1| RNA recognition motif domain [Macleaya cordata]
Length = 144
Score = 61.6 bits (148), Expect(2) = 6e-08
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVEHK 513
KVI R +GFVR ATIE A KA+ G+NAKFLDGWV+FVDPAK R P P + +
Sbjct: 68 KVITDRASGRSKGFGFVRYATIEEAEKAKEGMNAKFLDGWVIFVDPAKPREPKPPPQQE 126
Score = 26.6 bits (57), Expect(2) = 6e-08
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 513 EAGIRTNKTNMWCG 472
E G RTNKT WCG
Sbjct: 131 ETGFRTNKTIGWCG 144
>ref|XP_009404612.1| PREDICTED: 30 kDa ribonucleoprotein, chloroplastic [Musa acuminata
subsp. malaccensis]
Length = 176
Score = 60.5 bits (145), Expect(2) = 1e-07
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVP 534
KVI R +GFVR ATIE A KA++G+NAKFLDGWV+FVDPAK R P
Sbjct: 100 KVIADRISGRSKGFGFVRYATIEEADKARHGMNAKFLDGWVIFVDPAKPREP 151
Score = 26.6 bits (57), Expect(2) = 1e-07
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 513 EAGIRTNKTNMWCG 472
EAG+R NKT WCG
Sbjct: 163 EAGLRINKTVGWCG 176
>gb|PKA49012.1| 29 kDa ribonucleoprotein A, chloroplastic [Apostasia shenzhenica]
Length = 76
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/55 (58%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFVR TIE A A++G+NAKFLDGWV+FVDPAK R P P
Sbjct: 2 KVITDRVSGRSKGFGFVRYGTIEEADSARHGMNAKFLDGWVIFVDPAKPREPKSP 56
>ref|XP_020273175.1| glycine-rich RNA-binding protein 2, mitochondrial [Asparagus
officinalis]
gb|ONK62313.1| uncharacterized protein A4U43_C07F2610 [Asparagus officinalis]
Length = 163
Score = 56.2 bits (134), Expect(2) = 2e-07
Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVP 534
KVI R +GFV ATIE A KA+ G+NAKFLDGWV+FVDPAK R P
Sbjct: 87 KVITDRISGRSKGFGFVSYATIEDAEKARAGMNAKFLDGWVIFVDPAKPREP 138
Score = 30.4 bits (67), Expect(2) = 2e-07
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 543 KSTKPPC*AQEAGIRTNKTNMWCG 472
+S PP E GIR+NKT WCG
Sbjct: 140 RSPPPPANPYEDGIRSNKTIGWCG 163
>ref|XP_022143719.1| organelle RRM domain-containing protein 2, mitochondrial [Momordica
charantia]
Length = 145
Score = 58.2 bits (139), Expect(2) = 2e-07
Identities = 33/55 (60%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFV ATIE A KA+ G+NAKFLDGWV+FVDPAK R P P
Sbjct: 69 KVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 123
Score = 28.1 bits (61), Expect(2) = 2e-07
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 534 KPPC*AQEAGIRTNKTNMWCG 472
+P E GIRTNKT WCG
Sbjct: 125 QPQSETSEFGIRTNKTIGWCG 145
>ref|XP_022574960.1| organelle RRM domain-containing protein 2, mitochondrial-like
isoform X1 [Brassica napus]
Length = 176
Score = 60.8 bits (146), Expect = 5e-07
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = -2
Query: 833 EAFASYGHLLEDTYYLFFSFLCQSNFEPEFTSDGHFVICSKNHD*YDLRKVIFVDEDHRR 654
+AFA +G L++ L S L P+ S S+ + + +VI E R
Sbjct: 53 DAFAPFGELVDGNTTLSPSLL------PDPASYTSSKSLSRVFFFHTVARVITDRETGRS 106
Query: 653 SFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPV 522
+GFV ATI+ A KA+ G+NAKFLDGWV+FVDPA+ R P P+
Sbjct: 107 KGFGFVTYATIQDAEKAKEGMNAKFLDGWVIFVDPARPREPRRPL 151
>ref|XP_010260092.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial
[Nelumbo nucifera]
Length = 143
Score = 58.2 bits (139), Expect(2) = 6e-07
Identities = 33/55 (60%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFV ATIE A KA+ G+NAKFLDGWV+FVDPAK R P P
Sbjct: 67 KVIADRVSGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 121
Score = 26.6 bits (57), Expect(2) = 6e-07
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 513 EAGIRTNKTNMWCG 472
E G RTNKT WCG
Sbjct: 130 ETGFRTNKTVGWCG 143
>ref|NP_001325085.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gb|ANM62964.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 167
Score = 60.5 bits (145), Expect = 6e-07
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = -2
Query: 833 EAFASYGHLLEDTYYLFFSFLCQSNFEPEFTSDGHFVICSKNHD*YDLRKVIFVDEDHRR 654
+AFAS+G L++ L F P + C + + + D D R
Sbjct: 52 DAFASFGQLVDGNVTLGF-------LNPIYIEHQINRFC------FHVAARVITDRDSGR 98
Query: 653 SF-YGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVEHKKL 507
S +GFV ATIE A KA+ +NAKFLDGWV+FVDPA+ R P P++ + L
Sbjct: 99 SKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQEPL 149
>ref|XP_015968056.1| glycine-rich RNA-binding protein 6, mitochondrial [Arachis
duranensis]
ref|XP_015968057.1| glycine-rich RNA-binding protein 6, mitochondrial [Arachis
duranensis]
ref|XP_020981734.1| glycine-rich RNA-binding protein 6, mitochondrial [Arachis
duranensis]
Length = 141
Score = 59.7 bits (143), Expect = 7e-07
Identities = 32/55 (58%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R YGFV AT+E A KA+ G+NAKF+DGWV+FVDPAK R P P
Sbjct: 65 KVIMDRASGRSKGYGFVTYATVEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPP 119
>gb|KFK36640.1| hypothetical protein AALP_AA4G151100 [Arabis alpina]
Length = 144
Score = 59.7 bits (143), Expect = 7e-07
Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVEHK 513
+VI E R +GFV AT+E A KA+ G+NAKFLDGWV+FVDPA+ R P P++ +
Sbjct: 66 RVITDRETGRSKGFGFVTYATLEDAEKAKEGMNAKFLDGWVIFVDPARPREPRRPMQQE 124
>ref|XP_024003988.1| organelle RRM domain-containing protein 2, mitochondrial isoform X1
[Eutrema salsugineum]
Length = 176
Score = 60.5 bits (145), Expect = 7e-07
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Frame = -2
Query: 833 EAFASYGHLLEDTYYLFFSFLC-----QSNFEPEFTSDGHFVICSKNHD*YDLRKVIFVD 669
+AFA +G LL+ L F F+ Q++ + + +F + + +VI
Sbjct: 52 DAFAPFGELLDGNATLSFVFITSWIPYQTHTLYQISQTCYFGVVAA--------RVITDR 103
Query: 668 EDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVEHK 513
E R + FV ATI+ A KA+ G+NAKFLDGWV+FVDPA+ R P P + +
Sbjct: 104 ETGRSKGFAFVTYATIDDAEKAKEGMNAKFLDGWVIFVDPARPREPRRPPQQE 156
>ref|XP_022972736.1| organelle RRM domain-containing protein 2, mitochondrial [Cucurbita
maxima]
Length = 146
Score = 57.0 bits (136), Expect(2) = 8e-07
Identities = 32/55 (58%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R +GFV +TIE A KA+ G+NAKFLDGWV+FVDPAK R P P
Sbjct: 67 KVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 121
Score = 27.3 bits (59), Expect(2) = 8e-07
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1
Query: 513 EAGIRTNKTNMWCG 472
E GIRTNKT WCG
Sbjct: 133 EFGIRTNKTIGWCG 146
>ref|XP_015941307.1| glycine-rich RNA-binding protein 6, mitochondrial [Arachis
duranensis]
Length = 141
Score = 59.3 bits (142), Expect = 9e-07
Identities = 33/55 (60%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
KVI R YGFV ATIE A KA+ G+NAKF+DGWV+FVDPAK R P P
Sbjct: 65 KVITDRASGRSKGYGFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPP 119
>ref|XP_018438057.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial
[Raphanus sativus]
Length = 153
Score = 59.3 bits (142), Expect = 1e-06
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVE 519
+VI E R +GFV ATI+ A KA+ G+NAKFLDGWV+FVDPA+ R P P++
Sbjct: 71 RVITDRESGRSKGFGFVTYATIQDAEKAKEGMNAKFLDGWVIFVDPARPREPRRPLQ 127
>ref|XP_006295200.1| organelle RRM domain-containing protein 2, mitochondrial isoform X2
[Capsella rubella]
gb|EOA28098.1| hypothetical protein CARUB_v10024280mg [Capsella rubella]
Length = 141
Score = 58.9 bits (141), Expect = 1e-06
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHP 525
+VI E R +GFV ATIE A KA+ G+NAKFLDGWV+FVDPA+ R P P
Sbjct: 64 RVITDRETGRSKGFGFVTYATIEDAEKAKKGMNAKFLDGWVIFVDPARPREPRRP 118
>ref|XP_010653445.1| PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial
isoform X3 [Vitis vinifera]
Length = 137
Score = 56.2 bits (134), Expect(2) = 2e-06
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -2
Query: 686 KVIFVDEDHRRSFYGFVRNATIE-AGKAQYGVNAKFLDGWVMFVDPAKRRVPSHPVEHK 513
KVI R +GFV T+E A KA+ G+NAKFLDGWV+FVDPAK R P P + +
Sbjct: 61 KVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQQE 119
Score = 26.9 bits (58), Expect(2) = 2e-06
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 519 AQEAGIRTNKTNMWCG 472
+ E G RTNKT WCG
Sbjct: 122 SSETGFRTNKTIGWCG 137