BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00012031
         (1367 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   429   e-141
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]   380   e-122
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   387   e-117
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   387   e-117
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        363   e-111
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     357   e-108
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   357   e-108
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     349   e-105
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                             345   e-104
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            348   e-103
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   348   e-103
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro...   333   3e-99
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   329   1e-97
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   329   1e-97
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   323   1e-95
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...   312   5e-95
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   320   1e-94
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo...   304   8e-94
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar...   305   8e-93
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   311   1e-91

>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  429 bits (1102), Expect = e-141
 Identities = 214/429 (49%), Positives = 302/429 (70%), Gaps = 1/429 (0%)
 Frame = +1

Query: 82   RFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKALAAIQ 261
            +FDIEK+D  + FS+W+V+M+A+L QNGL KAL GK K P++M++E+  ELD+KAL+AIQ
Sbjct: 6    KFDIEKFDGKICFSIWKVQMKAVLTQNGLKKALDGKAKKPVNMTDEQWDELDEKALSAIQ 65

Query: 262  LCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKAHLDE 441
            LCLS EVLREV +E TA +LW KLESLY+TK+L +KL +K R++ + M EGT +++HL+E
Sbjct: 66   LCLSKEVLREVANETTAAALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNE 125

Query: 442  FTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFS-KETLTIEEVKAALFSKD 618
            F SI+MDLEN+EIK ++ED+A++L+ SLP +YKHF++ +++S  +TL+ E+VK+ L SK+
Sbjct: 126  FNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKE 185

Query: 619  LMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLTCNYCKKKGHIKAD 798
              D ++    S++    L +RG                   +  N TC YCKK GH  +D
Sbjct: 186  KFDLDI---HSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRGRKSNKTCRYCKKFGHDISD 242

Query: 799  CFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTATENKDKITQGWILDSACTFHICIH 978
            CF LK KQ+ +++       EA  +E +   +V+ +  +  +    WILDS CTFH+C +
Sbjct: 243  CFILKKKQERQEKGKNP--AEAANVETDSDGDVMISVSSDKRSKTEWILDSGCTFHMCPY 300

Query: 979  RDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMSKNLISLT 1158
            +D F+T  PV SGVVLMGND  C I GIG+++IK HDG I+TL+ VR + D+ +NLISL 
Sbjct: 301  KDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLG 360

Query: 1159 TLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIGSAAVSSSMSDTDVTRL 1338
            TL+  G  +    GVLKV KGA++++KA ++G LY+LQGS V GSAAVSSSMSD D T+L
Sbjct: 361  TLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKL 420

Query: 1339 WHMRLGHIS 1365
            WHMRLGH+S
Sbjct: 421  WHMRLGHMS 429


>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
          Length = 707

 Score =  380 bits (976), Expect = e-122
 Identities = 193/408 (47%), Positives = 279/408 (68%), Gaps = 3/408 (0%)
 Frame = +1

Query: 76   SIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKALAA 255
            S +FDIEK+D  +SF++W+V+M A+L QNGL K L GK   P + +EE+ +E D+KAL+ 
Sbjct: 2    STKFDIEKFDGKISFAIWRVQMLAVLTQNGLKKVLSGKSAKPATTTEEQWEETDEKALST 61

Query: 256  IQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKAHL 435
            IQLCLS EVLREVI+EKTA  +W KLESLY+TK+L +KL +K R+  L M+EGT +++HL
Sbjct: 62   IQLCLSREVLREVINEKTAAGIWSKLESLYMTKSLANKLRLKERLFTLRMSEGTPIQSHL 121

Query: 436  DEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKE-TLTIEEVKAALFS 612
             EF SI++DLENL+++ ++ED+A++L+ SLPPSY+HF++ +++    TL+ ++VK+ L S
Sbjct: 122  GEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKEIMLYGNNVTLSFDDVKSNLLS 181

Query: 613  KDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT-CNYCKKKGHI 789
            K+  D ++    S++    L++RG                  +K KN   C YCKK+ H 
Sbjct: 182  KEKFDTQI---HSESSGEGLVVRG----RNHEVGASGKNQSKSKGKNSKYCRYCKKRNHE 234

Query: 790  KADCFKLKNKQQHKDQNSQMQ-IVEANVIEDEIQCEVLTATENKDKITQGWILDSACTFH 966
             ++C+KLKNKQ  +D+  Q +   EA+ +E E   E   A+  + +    W+LDS CTFH
Sbjct: 235  ISECYKLKNKQNREDKGKQPEKSAEASFVETESDGECFIASGTEQRSKNEWVLDSGCTFH 294

Query: 967  ICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMSKNL 1146
            +  +RDWF+TY   + G+VLMGND  C +VG G++KIK HDG++RTLT VRHV D+ +NL
Sbjct: 295  MSPNRDWFTTYESFNGGLVLMGNDAQCKVVGKGTIKIKTHDGVVRTLTSVRHVPDLKRNL 354

Query: 1147 ISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIG 1290
            ISL TL+  G  +    GVLKV KGAL+++KA + G LY+LQGS  IG
Sbjct: 355  ISLGTLESQGCRYSAEGGVLKVSKGALVLLKAIRSGSLYLLQGSPDIG 402


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  387 bits (994), Expect = e-117
 Identities = 207/434 (47%), Positives = 283/434 (65%), Gaps = 2/434 (0%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            ++S ++D+EK+    SFSLW++KMRA+L+Q GL KAL GKDK P ++SEE+K ++ ++A 
Sbjct: 525  VSSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAH 584

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            +AI LCL +EVLREV  EKTA  LW +LES Y+TK+LT++L +K R++ L M EGT +  
Sbjct: 585  SAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQ 644

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HLD+F SI+MDL N++ K ++EDQA+++L SLPPSY++F DT+++ ++ LT+EEVK AL 
Sbjct: 645  HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALS 704

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLTCNYCKKKGHI 789
            S +L  K       +N    L+ RG                     K + C YCKK GH+
Sbjct: 705  SSELRKKITGKVVENNEGEGLVARG--RSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHM 762

Query: 790  KADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTATENKDKITQG-WILDSACTFH 966
            K DC K K K + ++Q +      ANV + +   +        D    G WILD+  TFH
Sbjct: 763  KVDCPKRKEKSESQEQQND----RANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFH 818

Query: 967  ICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMSKNL 1146
            I   +D FSTY    SG VLMGNDH C ++GIG+V+IKM DGI+RTLT+VRH+ +M KNL
Sbjct: 819  ISTSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNL 877

Query: 1147 ISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIGSAAVSSSMS-DT 1323
            ISL+TLD  G+ +    GVLKV  GAL V++      LY L GS+V G A VSSS   D+
Sbjct: 878  ISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDS 937

Query: 1324 DVTRLWHMRLGHIS 1365
            D T+LWHMRLGH+S
Sbjct: 938  DTTKLWHMRLGHMS 951


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  387 bits (994), Expect = e-117
 Identities = 207/434 (47%), Positives = 283/434 (65%), Gaps = 2/434 (0%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            ++S ++D+EK+    SFSLW++KMRA+L+Q GL KAL GKDK P ++SEE+K ++ ++A 
Sbjct: 504  VSSTKYDVEKFTGKNSFSLWRIKMRAVLVQQGLLKALSGKDKLPSTLSEEQKDDMLERAH 563

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            +AI LCL +EVLREV  EKTA  LW +LES Y+TK+LT++L +K R++ L M EGT +  
Sbjct: 564  SAILLCLGDEVLREVADEKTASGLWLRLESKYMTKSLTNRLYLKQRLYALKMEEGTPVSQ 623

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HLD+F SI+MDL N++ K ++EDQA+++L SLPPSY++F DT+++ ++ LT+EEVK AL 
Sbjct: 624  HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYGRDDLTLEEVKNALS 683

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLTCNYCKKKGHI 789
            S +L  K       +N    L+ RG                     K + C YCKK GH+
Sbjct: 684  SSELRKKITGKVVENNEGEGLVARG--RSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHM 741

Query: 790  KADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTATENKDKITQG-WILDSACTFH 966
            K DC K K K + ++Q +      ANV + +   +        D    G WILD+  TFH
Sbjct: 742  KVDCPKRKEKSESQEQQND----RANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFH 797

Query: 967  ICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMSKNL 1146
            I   +D FSTY    SG VLMGNDH C ++GIG+V+IKM DGI+RTLT+VRH+ +M KNL
Sbjct: 798  ISTSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNL 856

Query: 1147 ISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIGSAAVSSSMS-DT 1323
            ISL+TLD  G+ +    GVLKV  GAL V++      LY L GS+V G A VSSS   D+
Sbjct: 857  ISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDS 916

Query: 1324 DVTRLWHMRLGHIS 1365
            D T+LWHMRLGH+S
Sbjct: 917  DTTKLWHMRLGHMS 930


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  363 bits (931), Expect = e-111
 Identities = 193/445 (43%), Positives = 287/445 (64%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            M S+++D+   DR   FSLWQVKMRA+L Q  L  AL G DK     S +EK+  D KA+
Sbjct: 1    MTSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEKKR-DRKAM 59

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+TA  LW KLE + +TK+LTSK+ +K ++ +  + +  S+  
Sbjct: 60   SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 119

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+E+D AL+LL SLP SY +FRDT+++S++TLT++EV  AL 
Sbjct: 120  HLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 179

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
            +K+ M K +    S++ A  L++RG                   + ++ +      C YC
Sbjct: 180  AKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYC 239

Query: 772  KKKGHIKADCFKLKNKQQHKDQ-----NSQMQIVEANVIEDEIQCEVLTATENKDKITQG 936
            K+ GH  + C+KL++K +   +       + +   A V +++   E+L A     + +  
Sbjct: 240  KRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ 299

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WILD+ACT+H+C +RDWF+TY  V  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 300  WILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 359

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY LQG+T++G+
Sbjct: 360  RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGN 419

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             A VS S+S++D T LWHMRLGH+S
Sbjct: 420  VATVSDSLSNSDATNLWHMRLGHMS 444


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  357 bits (917), Expect = e-108
 Identities = 191/445 (42%), Positives = 287/445 (64%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+   DR   FSLWQVKMRA+L Q  L  AL G DK     S +EK++ D KA+
Sbjct: 36   MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAM 94

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+TA  LW KLE + +TK+LTSK+ +K ++ +  + +  S+  
Sbjct: 95   SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S +TL ++EV  AL 
Sbjct: 155  HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
            +K+ M K +    S++ A  L++RG                   + ++ +      C YC
Sbjct: 215  AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274

Query: 772  KKKGHIKADCFKLKNKQQHKDQ-----NSQMQIVEANVIEDEIQCEVLTATENKDKITQG 936
            K+ GH  ++C+KL++K +   +       + +   A V +++   E+L A     + +  
Sbjct: 275  KRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQ 334

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WILD+A T+H+C +RDWF+TY  +  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 335  WILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDV 394

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY L+G+T++G+
Sbjct: 395  RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGN 454

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             AAVS S+S++D T LWHMRLGH+S
Sbjct: 455  VAAVSDSLSNSDATNLWHMRLGHMS 479


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  357 bits (917), Expect = e-108
 Identities = 191/445 (42%), Positives = 287/445 (64%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+   DR   FSLWQVKMRA+L Q  L  AL G DK     S +EK++ D KA+
Sbjct: 36   MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAM 94

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+TA  LW KLE + +TK+LTSK+ +K ++ +  + +  S+  
Sbjct: 95   SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S +TL ++EV  AL 
Sbjct: 155  HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
            +K+ M K +    S++ A  L++RG                   + ++ +      C YC
Sbjct: 215  AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274

Query: 772  KKKGHIKADCFKLKNKQQHKDQ-----NSQMQIVEANVIEDEIQCEVLTATENKDKITQG 936
            K+ GH  ++C+KL++K +   +       + +   A V +++   E+L A     + +  
Sbjct: 275  KRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQ 334

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WILD+A T+H+C +RDWF+TY  +  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 335  WILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDV 394

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY L+G+T++G+
Sbjct: 395  RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGN 454

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             AAVS S+S++D T LWHMRLGH+S
Sbjct: 455  VAAVSDSLSNSDATNLWHMRLGHMS 479


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  349 bits (895), Expect = e-105
 Identities = 188/445 (42%), Positives = 286/445 (64%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+   DR   FSLWQVKMRA+L Q  L  AL G DK     S +EK+  D K +
Sbjct: 1    MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKR-DRKTM 59

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+TA  LW KLE + +TK+LTSK+ +K ++ +  + +  S+  
Sbjct: 60   SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 119

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S +TLT++EV  AL 
Sbjct: 120  HLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCDTLTLKEVYDALH 179

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
            +K+ + K +    S++ A  L++RG                   + ++ +      C Y 
Sbjct: 180  AKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCKYY 239

Query: 772  KKKGHIKADCFKLKNKQQ----HKDQNSQMQIVEANVIEDE-IQCEVLTATENKDKITQG 936
            K+ GH  ++C+KL++K +    +  +  + +  +A V+ DE    E+L A     + +  
Sbjct: 240  KRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ 299

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WILD+ACT+H+C++RDWF+TY  V  G VLMG+D PC + G+ +V+IKM DG IRTL++V
Sbjct: 300  WILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLSDV 359

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD   Y + G  G+LKV KG+L+VMKA  +   LY ++G+T++G+
Sbjct: 360  RHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTILGN 419

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             AAVS S+ ++D T LWHMRLGH+S
Sbjct: 420  IAAVSDSLYNSDATNLWHMRLGHMS 444


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score =  345 bits (885), Expect = e-104
 Identities = 189/445 (42%), Positives = 278/445 (62%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+   DR   FSLWQVKMRA+L Q  L  A  G DK     S +EK+ +D KA+
Sbjct: 1    MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAFSGFDKRTQDWSNDEKK-MDRKAM 59

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+TA  LW KLE + +TK+LT+                 S+  
Sbjct: 60   SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTND---------------GSVMD 104

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S++TLT++EV  AL 
Sbjct: 105  HLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 164

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
            +K+ M K +    S++ A  L+++G                   + ++ +      C YC
Sbjct: 165  AKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYC 224

Query: 772  KKKGHIKADCFKLKNKQQHKDQ-----NSQMQIVEANVIEDEIQCEVLTATENKDKITQG 936
            K+ GH  + C+KL++K +   +       + +   A V +++   E+L A     + +  
Sbjct: 225  KRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQ 284

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WILD+ACT+H+C +RDWF+TY  V  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 285  WILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 344

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY LQG+T++G+
Sbjct: 345  RHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGN 404

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             A VS S+S++D T LWHMRLGH+S
Sbjct: 405  VATVSDSLSNSDATNLWHMRLGHMS 429


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  348 bits (892), Expect = e-103
 Identities = 190/445 (42%), Positives = 283/445 (63%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+    R   FSLWQVKMRA+L Q  L  AL G DK     S +EK+  D KA+
Sbjct: 1    MASLKYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKR-DRKAM 59

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+ A  LW KLE + +TK+LTSK+ +K  + +  + +  S+  
Sbjct: 60   SYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMD 119

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S++TLT++EV  AL 
Sbjct: 120  HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 179

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
             K+ M K +    S++ A  L++ G                   + ++ +      C YC
Sbjct: 180  VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 239

Query: 772  KKKGHIKADCFKLKNKQQ----HKDQNSQMQIVEANVIEDE-IQCEVLTATENKDKITQG 936
            K+ GH   +C+KL +K +    +  +  + +  +A V+ DE    E+L A     + +  
Sbjct: 240  KRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ 299

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WIL++AC +H+C +RDWF+TY  V  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 300  WILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 359

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY L+G+T++G+
Sbjct: 360  RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGN 419

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             AAVS S+S++D T LWHMRLGH++
Sbjct: 420  VAAVSDSLSNSDATNLWHMRLGHMT 444


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  348 bits (892), Expect = e-103
 Identities = 190/445 (42%), Positives = 283/445 (63%), Gaps = 13/445 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            MAS+++D+    R   FSLWQVKMRA+L Q  L  AL G DK     S +EK+  D KA+
Sbjct: 208  MASLKYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKR-DRKAM 266

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I L LSN +L+EV+ E+ A  LW KLE + +TK+LTSK+ +K  + +  + +  S+  
Sbjct: 267  SYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMD 326

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL  F  I+ DLE++E+KY+EED  L+LL SLP SY +FRDT+++S++TLT++EV  AL 
Sbjct: 327  HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 386

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT------CNYC 771
             K+ M K +    S++ A  L++ G                   + ++ +      C YC
Sbjct: 387  VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 446

Query: 772  KKKGHIKADCFKLKNKQQ----HKDQNSQMQIVEANVIEDE-IQCEVLTATENKDKITQG 936
            K+ GH   +C+KL +K +    +  +  + +  +A V+ DE    E+L A     + +  
Sbjct: 447  KRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ 506

Query: 937  WILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEV 1116
            WIL++AC +H+C +RDWF+TY  V  G VLMG+D PC + GIG+V+IKM DG IRTL++V
Sbjct: 507  WILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDV 566

Query: 1117 RHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQ-QVGRLYVLQGSTVIGS 1293
            RH+ ++ ++LISL TLD  GY + G  G+LKV KG+L+VMKA  +   LY L+G+T++G+
Sbjct: 567  RHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGN 626

Query: 1294 -AAVSSSMSDTDVTRLWHMRLGHIS 1365
             AAVS S+S++D T LWHMRLGH++
Sbjct: 627  VAAVSDSLSNSDATNLWHMRLGHMT 651


>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
          Length = 1309

 Score =  333 bits (854), Expect = 3e-99
 Identities = 178/436 (40%), Positives = 274/436 (62%), Gaps = 4/436 (0%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            M++ +FD+EK+  S  FSLW++KM+ALL+  GL  AL  + +   ++ +++  E D KA 
Sbjct: 1    MSTTKFDLEKFTGSNDFSLWRIKMKALLVHTGLGGALNPEPQDD-TIDKKKIVETDSKAF 59

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            +AI LCL +EVLREV  E +ALSLW KLESLYL ++L ++L +K  ++ +++ EG  LK 
Sbjct: 60   SAILLCLGDEVLREVAEEVSALSLWNKLESLYLKRSLANRLYLKKSLYTIHLEEGKDLKK 119

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            H+DEF  I++DL+N++IK  +ED A+++L SLP SY+HF DT+++ KETLT+ EVK+AL 
Sbjct: 120  HMDEFNKIILDLKNVDIKITDEDCAILMLSSLPRSYEHFVDTMLYGKETLTMAEVKSALN 179

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHK-NLTCNYCKKKGH 786
            SK+L  K    +  ++    L +RG                  ++ +  L C  C K+GH
Sbjct: 180  SKELHKKN--ETKMESTGEGLNVRGRTYKRESRNEKGGKHRSQSRTRGKLKCFVCHKEGH 237

Query: 787  IKADC--FKLKNKQQHKDQNSQMQIVEANVIEDEIQ-CEVLTATENKDKITQGWILDSAC 957
             K DC   + +N ++ KD        +A V+ D  +  EVL  +    +    W++DS C
Sbjct: 238  FKKDCPDRRARNPERRKDPG------DAAVVSDGYESAEVLVVSRTNKQ--DCWVMDSGC 289

Query: 958  TFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMS 1137
            +FH+C  + WF       SG VL+GN+  C ++GIGSV +KMHDG +RT+TEVR+V D+ 
Sbjct: 290  SFHMCPIKSWFQNLVEEESGHVLLGNNRECKVMGIGSVLLKMHDGCVRTITEVRYVPDLR 349

Query: 1138 KNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIGSAAVSSSMS 1317
            +NL+S+  LD  G++     G +KV+KG+L VM+  Q   LY+L+ STV GS+  ++++ 
Sbjct: 350  RNLLSIGMLDSKGFNVKIEGGTMKVIKGSLTVMRGSQDNGLYILEASTVTGSS--NAAVG 407

Query: 1318 DTDVTRLWHMRLGHIS 1365
              +  RLWH+RLGH+S
Sbjct: 408  GANKARLWHLRLGHVS 423


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  329 bits (843), Expect = 1e-97
 Identities = 186/434 (42%), Positives = 265/434 (61%), Gaps = 3/434 (0%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            M+++   I+K+    SFSLWQ+KMRALL Q G    L  KDK  +   E     L++KA 
Sbjct: 1    MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLS-KDKNAVVTPE--MAILEEKAH 57

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            + I LCL+++V+ EV  E+TA  LW KLESLY+TK+LT+KL++K R+  L MAEGT L+ 
Sbjct: 58   STIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLRE 117

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALF 609
            HL++  ++L++L N+++K E+ED AL+LL SLP S+++F  + I  K+T+++EEV++AL 
Sbjct: 118  HLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALH 177

Query: 610  SKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLTCNYCKKKGHI 789
            S++L  K   G+S+D   + L                             CNYCK+KGH 
Sbjct: 178  SRELRHK-ANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDD--VCNYCKEKGHW 234

Query: 790  KADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCE--VLTATENKDKITQGWILDSACTF 963
            K DC K       K + S+ Q V A V E++   E  +    +     +  W+LDS  ++
Sbjct: 235  KFDCPK-------KKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASY 287

Query: 964  HICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDMSKN 1143
            HIC  R+WF+TY  V  G + M N   C +VG GS+KI+ HDG   TL EVRHV  M+KN
Sbjct: 288  HICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKN 347

Query: 1144 LISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGSTVIGSAAVSSS-MSD 1320
            LISL+ LD  G+ + G  GVL+V KG+ +++K    G LY LQGSTV GSA V+SS    
Sbjct: 348  LISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQ 407

Query: 1321 TDVTRLWHMRLGHI 1362
             D+T+LWH+RLGH+
Sbjct: 408  KDMTKLWHIRLGHM 421


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1326

 Score =  329 bits (843), Expect = 1e-97
 Identities = 188/442 (42%), Positives = 272/442 (61%), Gaps = 10/442 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNG-LHKALQGKDKFPISMSEEEKQELDDKA 246
            MASI++D+   D    FSLWQVKMRA+L Q   L +AL+   K   +    E++  D KA
Sbjct: 1    MASIKYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKA 60

Query: 247  LAAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLK 426
            L  IQL LSN++L+EV+ EKTA  LW KLES+ ++K+LTSK+ +K ++    + E  S+ 
Sbjct: 61   LLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVL 120

Query: 427  AHLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAAL 606
             H+  F  I++DL ++E+++++ED  L+LL SLP SY +FRDT++ S++ LT+ EV  AL
Sbjct: 121  NHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEAL 180

Query: 607  FSKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT----CNYCK 774
             +++ M   +   +S +   +L +RG                             C YCK
Sbjct: 181  QNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCK 240

Query: 775  KKGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTA--TENKDKITQGWILD 948
            KK H   +C+KL+NK++ K  + +  +V +    D   C V+ A    + D+    WILD
Sbjct: 241  KKNHFIEECWKLQNKEKRK-SDGKASVVTSAENSDSGDCLVVFAGCVASHDE----WILD 295

Query: 949  SACTFHICIHRDWFSTYTPVSSG-VVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHV 1125
            +AC+FHICI+RDWFS+Y  V +G VV MG+D+P  IVGIGSV+IK HDG+ RTL +VRH+
Sbjct: 296  TACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHI 355

Query: 1126 LDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKA-QQVGRLYVLQGSTVIGSAAV 1302
              M++NLISL+TLD  GY +  S GV+KV KG+L+ M        LYVL+GST+ GS   
Sbjct: 356  PGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTA 415

Query: 1303 SSSMSDTDV-TRLWHMRLGHIS 1365
            ++   D  + T LWHMRLGH+S
Sbjct: 416  AAVSKDEPIKTNLWHMRLGHMS 437


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  323 bits (828), Expect = 1e-95
 Identities = 187/442 (42%), Positives = 273/442 (61%), Gaps = 10/442 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNG-LHKALQGKDKFPISMSEEEKQELDDKA 246
            MAS+++D+   D    FSLWQVKMRA+L Q   L +AL+   K   +     ++  D KA
Sbjct: 1    MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKA 60

Query: 247  LAAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLK 426
            L+ IQL LSN++L+EV+ EKTA  LW KLES+ ++K+LTSK+ +K ++    + E  S+ 
Sbjct: 61   LSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVL 120

Query: 427  AHLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAAL 606
             H+  F  I+ DL ++E+++++ED  L+LL SLP SY++FRDT++ S++ LT+ EV  AL
Sbjct: 121  NHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEAL 180

Query: 607  FSKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT----CNYCK 774
             +++ M   +   +S +   +L ++G                             C YCK
Sbjct: 181  QNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCK 240

Query: 775  KKGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTA--TENKDKITQGWILD 948
            KK H   +C+KL+NK++ K  + +  +V +    D   C V+ A    + D+    WILD
Sbjct: 241  KKIHFIKECWKLQNKEKRK-SDGKASVVTSAKNSDSGDCLVVFAGCVASHDE----WILD 295

Query: 949  SACTFHICIHRDWFSTYTPVSSG-VVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHV 1125
            +AC+FHI I+RDWFS+Y  V +G VV MGND+P  IVGIGSV+IK HDGI RTL +VRH+
Sbjct: 296  TACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHI 355

Query: 1126 LDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKA-QQVGRLYVLQGSTVIGS-AA 1299
              M++NLISL+TLD  GY + GS GV+KV KG+L+ M        LYVL+GST+ GS  A
Sbjct: 356  PGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTA 415

Query: 1300 VSSSMSDTDVTRLWHMRLGHIS 1365
             + +  + + T LWHMRLGH+S
Sbjct: 416  AAVTKDEPNKTNLWHMRLGHMS 437


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 780

 Score =  312 bits (800), Expect = 5e-95
 Identities = 165/439 (37%), Positives = 268/439 (61%), Gaps = 7/439 (1%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNGLHKALQGKDKFPISMSEEEKQELDDKAL 249
            M + ++DIEK+     F LW++KM A+LIQ G  +A++G++K   S++++EK  + +KA 
Sbjct: 1    MGNTKYDIEKFSGENDFGLWRIKMEAILIQQGCAEAIKGEEKMSSSLTQKEKTNMIEKAR 60

Query: 250  AAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKA 429
            +AI LCL ++ LREV  EKTA ++W KLESLY+TK+L  +L +K R++   M E  S+  
Sbjct: 61   SAIILCLGDKALREVAREKTAAAMWLKLESLYMTKSLAHRLCLKQRLYSFKMTETKSIVD 120

Query: 430  HLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKE-TLTIEEVKAAL 606
             L EF  IL DLEN+E++ E+ED+AL+LL SLP +Y+HF+D +++ KE  +T++EV+ ++
Sbjct: 121  QLAEFNKILDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSI 180

Query: 607  FSKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTK---HKNLTCNYCKK 777
             +K+L  ++   + +D+   SL +                    +K        C YC K
Sbjct: 181  RTKELQRQQ--DNKTDDNGESLNVSRGRSEKKGQSQKGKKARSKSKIGDRSKFKCFYCHK 238

Query: 778  KGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQ-CEVLTATENKDKITQGWILDSA 954
             GH K +C      ++++DQ S     +   I D  +  +VL  T ++ +  + W++DS 
Sbjct: 239  VGHFKKNC-----PERNRDQKSSADSADIAAISDGYESADVLVVTTSQTQ--KDWVMDSG 291

Query: 955  CTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDM 1134
            C++H+C  +D+F T      G VL+G+DHPC + GIG+V++KM D     L +VR+V D+
Sbjct: 292  CSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDL 351

Query: 1135 SKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKA--QQVGRLYVLQGSTVIGSAAVSS 1308
             +NLIS++  D  GY      GVLK++ G+L++ K    +   L+VL GSTV+  A++  
Sbjct: 352  KRNLISISMFDSLGYATKTQHGVLKILNGSLVIAKGNKDKNNGLFVLDGSTVMAHASI-- 409

Query: 1309 SMSDTDVTRLWHMRLGHIS 1365
            + +D D T+LWH+RLGH+S
Sbjct: 410  ARNDIDKTKLWHLRLGHVS 428


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  320 bits (821), Expect = 1e-94
 Identities = 185/442 (41%), Positives = 271/442 (61%), Gaps = 10/442 (2%)
 Frame = +1

Query: 70   MASIRFDIEKYDRSMSFSLWQVKMRALLIQNG-LHKALQGKDKFPISMSEEEKQELDDKA 246
            MAS+++D+   D    FSLWQVKMRA+L Q   L +AL+   K   +    E++  D KA
Sbjct: 1    MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKA 60

Query: 247  LAAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLK 426
            L+ IQL LSN++L+EV+ +KTA  LW KLES+ ++K+LTSK+ +K ++    + E  S+ 
Sbjct: 61   LSLIQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVL 120

Query: 427  AHLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAAL 606
             H+  F  I+ DL ++E+++++ED  L+LL SLP SY +FR T++ S++ LT+ EV  AL
Sbjct: 121  NHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEAL 180

Query: 607  FSKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT----CNYCK 774
             +++ M   +   +S +   +L +RG                             C YCK
Sbjct: 181  QNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCK 240

Query: 775  KKGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTA--TENKDKITQGWILD 948
            KK H   +C+KL+NK++ K  + +  +V +    D   C V+ A    + D+    WILD
Sbjct: 241  KKNHFIEECWKLQNKEKRK-SDGKASVVTSAENSDSGDCLVVFAGYVASHDE----WILD 295

Query: 949  SACTFHICIHRDWFSTYTPV-SSGVVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHV 1125
            +AC+FHICI+RDWFS+Y  V +  VV MG+D+P  IVGIGSV+IK HDG+ RTL +VRH+
Sbjct: 296  TACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHI 355

Query: 1126 LDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKA-QQVGRLYVLQGSTVIGS-AA 1299
              M++NLISL+TLD  GY + GS GV+KV KG+L+ M        LYVL+GST+ GS  A
Sbjct: 356  PGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTA 415

Query: 1300 VSSSMSDTDVTRLWHMRLGHIS 1365
             + +  +   T LWHMRLGH+S
Sbjct: 416  AAVTKDEPSKTNLWHMRLGHMS 437


>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 593

 Score =  304 bits (779), Expect = 8e-94
 Identities = 167/390 (42%), Positives = 240/390 (61%), Gaps = 1/390 (0%)
 Frame = +1

Query: 199  PISMSEEEKQELDDKALAAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVV 378
            P S+  E+  E ++KA + I L LS+EVL EV  ++TA  LW KLE LY+TK++ +KL++
Sbjct: 31   PTSVKNEDLAEQEEKAHSLILLSLSDEVLYEVADQETASGLWLKLEKLYMTKSICNKLLL 90

Query: 379  KHRMHMLNMAEGTSLKAHLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTL 558
            K R+  L+M E T L+ HLDE  SILM+L ++ +K E+ED A++LL SLPPSY+ F ++L
Sbjct: 91   KRRLFGLHMKEDTPLQDHLDELNSILMELRDINVKIEDEDAAMILLASLPPSYESFVNSL 150

Query: 559  IFSKETLTIEEVKAALFSKDLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXX 738
               KE +T+EEVK++L S++L  K    S   N A  L                      
Sbjct: 151  SVGKECITMEEVKSSLHSRELRFKASANSEGVNGAGLLAFNSTTNGKKKKEQGKKKTKVN 210

Query: 739  TKHKNLTCNYCKKKGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTATENK 918
             +     CNYCK+ GH K DC K +N++     +  +   E +  E+E+   VL+  +N 
Sbjct: 211  PRD---ICNYCKEPGHWKKDCPKKRNQK-----SVVVAAQEDSSFENEL---VLSIVDNH 259

Query: 919  DKITQGWILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHDGII 1098
                + W+LDS C++H+C +R WF TY     G V MGND  C  + IG+++IKMHDG+I
Sbjct: 260  QHFVEQWVLDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVI 319

Query: 1099 RTLTEVRHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVLQGS 1278
            RTLTEVRHV D+ KNLIS+  LD  G+      GV+++ KG+ IV++  + G LY+LQGS
Sbjct: 320  RTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGS 379

Query: 1279 TVIGSAAVSSSMSDT-DVTRLWHMRLGHIS 1365
            T + S ++S +   T D+TRLWHMRLGH+S
Sbjct: 380  TNLISESISVADKHTLDLTRLWHMRLGHMS 409


>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
          Length = 718

 Score =  305 bits (781), Expect = 8e-93
 Identities = 159/387 (41%), Positives = 253/387 (65%), Gaps = 1/387 (0%)
 Frame = +1

Query: 193  KFPISMSEEEKQELDDKALAAIQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKL 372
            K P ++++ E +ELD+KAL+AIQLCL+N VL++V+ EKT+ +LWK+LE+LY TK+L ++L
Sbjct: 309  KKPENLNQTEWEELDEKALSAIQLCLTNTVLQDVLMEKTSFALWKRLETLYATKSLANRL 368

Query: 373  VVKHRMHMLNMAEGTSLKAHLDEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRD 552
            V+K R+    M EG  LK H+ +F ++L DL+N+E+  ++EDQA++LL SLP SYK F++
Sbjct: 369  VLKQRLFTFRMNEGELLKDHISQFITLLNDLKNVEVHIDDEDQAMLLLCSLPSSYKSFKE 428

Query: 553  TLIFSKETLTIEEVKAALFSKDLMDKEL-VGSSSDNPATSLMIRGXXXXXXXXXXXXXXX 729
            TLI+ K+ L+ E+VK  L S+D +D E  + S +D  A+ L+                  
Sbjct: 429  TLIYGKDKLSFEDVKGHLLSRDKLDNEFDLNSKADRQASVLV------------------ 470

Query: 730  XXXTKHKNLTCNYCKKKGHIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTAT 909
               +K +   C YCKK GH+KAD +KL+NK+    ++++  +V AN++++     +L +T
Sbjct: 471  --ASKKREKRCRYCKKLGHVKADYYKLRNKR--AAESNEEDVVGANLVDEGGDDFLLVST 526

Query: 910  ENKDKITQGWILDSACTFHICIHRDWFSTYTPVSSGVVLMGNDHPCNIVGIGSVKIKMHD 1089
             +  K+T  WILDS C+FH+  +R+WFSTY+ V  GVV MGND    I+GIG+VKI++HD
Sbjct: 527  SDNSKLTSEWILDSGCSFHMYPNREWFSTYSSVEGGVVHMGNDSSSKIIGIGTVKIRIHD 586

Query: 1090 GIIRTLTEVRHVLDMSKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKAQQVGRLYVL 1269
            G I+TL++VR+V D+ KNLISL+ LDL G      +  +KV +GAL+++K  +     + 
Sbjct: 587  GTIKTLSDVRYVPDLRKNLISLSILDLKGCRINIESSNIKVSRGALVLLKGFEKLGHCIR 646

Query: 1270 QGSTVIGSAAVSSSMSDTDVTRLWHMR 1350
            +  T +   + ++ +   D   +W++R
Sbjct: 647  ENQTRVYPNSWTAILVSLDNQGMWNVR 673


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group]
 gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group]
 gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1229

 Score =  311 bits (798), Expect = 1e-91
 Identities = 180/439 (41%), Positives = 266/439 (60%), Gaps = 10/439 (2%)
 Frame = +1

Query: 79   IRFDIEKYDRSMSFSLWQVKMRALLIQNG-LHKALQGKDKFPISMSEEEKQELDDKALAA 255
            +++D+   D    FSLWQVKMRA+L Q   L +AL+   K   +    E++  D KAL+ 
Sbjct: 1    MKYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSL 60

Query: 256  IQLCLSNEVLREVIHEKTALSLWKKLESLYLTKNLTSKLVVKHRMHMLNMAEGTSLKAHL 435
            IQL LSN++L++V+ EKTA  LW KLES+ ++K+LTSK+ +K ++    + E  S+  H+
Sbjct: 61   IQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHI 120

Query: 436  DEFTSILMDLENLEIKYEEEDQALMLLRSLPPSYKHFRDTLIFSKETLTIEEVKAALFSK 615
              F  I+ DL ++E+++++ED  L+LL SLP  Y +FRDT++ S++ LT+ EV  AL ++
Sbjct: 121  SVFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRDTILLSRDELTLAEVYEALQNR 180

Query: 616  DLMDKELVGSSSDNPATSLMIRGXXXXXXXXXXXXXXXXXXTKHKNLT----CNYCKKKG 783
            + M   +   +S +   +L +RG                             C YCKKK 
Sbjct: 181  EKMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKN 240

Query: 784  HIKADCFKLKNKQQHKDQNSQMQIVEANVIEDEIQCEVLTA--TENKDKITQGWILDSAC 957
            H   +C+KL+NK++ K  + +  +V +    D   C V  A    + D+    WILD+AC
Sbjct: 241  HFIEECWKLQNKEKRK-SDGKASVVTSAENSDSADCLVFFAGCVASHDE----WILDTAC 295

Query: 958  TFHICIHRDWFSTYTPVSSG-VVLMGNDHPCNIVGIGSVKIKMHDGIIRTLTEVRHVLDM 1134
             F ICI+RDWFS++  V +G VV MG+++P  I+GIGSV+IK HDG+ RTL +VRH+  M
Sbjct: 296  LFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGM 355

Query: 1135 SKNLISLTTLDLAGYDFIGSAGVLKVVKGALIVMKA-QQVGRLYVLQGSTVIGS-AAVSS 1308
            ++NLISL+TLD  GY + GS GV+KV KG+L+ M        LYVL+GST+ GS  A + 
Sbjct: 356  ARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSLTAAAV 415

Query: 1309 SMSDTDVTRLWHMRLGHIS 1365
            S  +   T LWHMRLGH+S
Sbjct: 416  SKDEPSKTNLWHMRLGHMS 434