BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00011912
         (3135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_018679039.1| PREDICTED: DNA-directed RNA polymerase V sub...  1453   0.0  
ref|XP_009391189.1| PREDICTED: DNA-directed RNA polymerase V sub...  1453   0.0  
ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V sub...  1403   0.0  
gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial ...  1392   0.0  
ref|XP_020090098.1| DNA-directed RNA polymerase V subunit 1 [Ana...  1313   0.0  
ref|XP_020269146.1| DNA-directed RNA polymerase V subunit 1 [Asp...  1244   0.0  
ref|XP_008812396.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1240   0.0  
ref|XP_015625443.1| PREDICTED: DNA-directed RNA polymerase V sub...  1196   0.0  
gb|PAN04046.1| hypothetical protein PAHAL_A00310 [Panicum hallii]    1192   0.0  
ref|XP_004951807.1| DNA-directed RNA polymerase V subunit 1 [Set...  1187   0.0  
ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V sub...  1184   0.0  
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...  1182   0.0  
ref|XP_010238829.1| PREDICTED: DNA-directed RNA polymerase V sub...  1179   0.0  
gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria ital...  1178   0.0  
gb|AQK60576.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]    1167   0.0  
gb|AQK60584.1| DNA-directed RNA polymerase V subunit 1, partial ...  1167   0.0  
gb|AQK60588.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]    1167   0.0  
gb|AQK60586.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]    1167   0.0  
gb|AQK60579.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]    1167   0.0  
gb|AQK60571.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]    1167   0.0  

>ref|XP_018679039.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1444

 Score = 1453 bits (3761), Expect = 0.0
 Identities = 724/1001 (72%), Positives = 845/1001 (84%), Gaps = 4/1001 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M+D+++S LVLDGS+ SIKFS+AT+EEI+TYSI+ CPISHPSQLANPFLG+PLESG CE+
Sbjct: 1    MEDQVSSPLVLDGSICSIKFSIATAEEIRTYSISDCPISHPSQLANPFLGLPLESGGCET 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKSTS- 2636
            CGT EIGNCEGHFG+IELPIPVYHPSHVSELRD+LS +CLKCLRMKKVKY   K K +S 
Sbjct: 61   CGTAEIGNCEGHFGYIELPIPVYHPSHVSELRDLLSLVCLKCLRMKKVKYSVGKGKISSM 120

Query: 2635 -CIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSCRPLLP 2459
             C+YC DLP ISI+EVKT+D A  LEL V  ++R+ + FW+FLDR+G+HY GT  RPLLP
Sbjct: 121  PCLYCLDLPSISIKEVKTADGATCLELRVSSRSRLQDGFWSFLDRFGYHYAGTFRRPLLP 180

Query: 2458 HEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDISRP 2279
             EAL +L+++PEE+ KKL GKGYF Q G IME LPVPPNCLCVPEISDGKCVMSSDIS+ 
Sbjct: 181  SEALKILEKLPEETQKKLAGKGYFLQNGFIMERLPVPPNCLCVPEISDGKCVMSSDISKS 240

Query: 2278 LLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFVLSH 2099
            LLKK+L KI+LIKRSRSGSP+FES+ +E N+LQS IA Y+ LRGTTK+P D  RRF   +
Sbjct: 241  LLKKILGKIELIKRSRSGSPSFESYEVETNDLQSSIALYMNLRGTTKAPRDITRRFAFGN 300

Query: 2098 ESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEERVTE 1919
            E+NE  TKQWL+KIRTLFIRKGSGFSSR VI+GDPYIG++V+GLPSEIAKRITFEERVTE
Sbjct: 301  ETNEYLTKQWLDKIRTLFIRKGSGFSSRSVISGDPYIGINVVGLPSEIAKRITFEERVTE 360

Query: 1918 HNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINRPPS 1739
            HNI RLQN+VD R CITYKDGS TYAIS+GSKGHT+LK+GQ+INRQI++GDIVFINRPPS
Sbjct: 361  HNITRLQNVVDSRLCITYKDGSSTYAISVGSKGHTNLKIGQVINRQILDGDIVFINRPPS 420

Query: 1738 THKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFSVEK 1559
            THKHSLQAF+VYIHDDHTVKINPLICA LGADFDGDCVHIFYPQSLSAKAEV+ELFSVEK
Sbjct: 421  THKHSLQAFYVYIHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLSAKAEVLELFSVEK 480

Query: 1558 QLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANKYGP 1379
            QLL SHSG LN+QLV D+ LALKLI    F+KK VAQQL M+    LP P I++A K GP
Sbjct: 481  QLLSSHSGSLNLQLVQDASLALKLIFKSGFIKKEVAQQLGMYVSSMLPPPAIVKATKCGP 540

Query: 1378 SRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRGPKD 1199
              T LQ+LQN+ P FLD SGE +  I +SEIL+LD+ +D+VQ LLTDI + I+ M+GP +
Sbjct: 541  CWTILQVLQNVFPAFLDCSGERY-FIRESEILELDTDQDVVQSLLTDIMTHIYHMKGPME 599

Query: 1198 VLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYNELV 1019
            VLNFFNYIQPLLMEMLF+EGFSI LKDF + K+V+ EI+ SIQ+ SCI+NQLRS  +E  
Sbjct: 600  VLNFFNYIQPLLMEMLFMEGFSICLKDFILSKAVVSEIQGSIQKNSCILNQLRSRRDERA 659

Query: 1018 QLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKYYSR 842
            +LQVQN+L+++K PI+ F+   SA+GNLID KSDS++ KVVEQ+GFL LQLFDQGKYYSR
Sbjct: 660  ELQVQNHLRSMKDPIVKFILNSSALGNLIDSKSDSSMVKVVEQLGFLGLQLFDQGKYYSR 719

Query: 841  VLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXXRGL 662
             LV+DCF+N+V+KHS    + PSE+YGLV+NSFFHGL P+E LVH            RGL
Sbjct: 720  ALVDDCFLNFVSKHSAGEVDHPSEAYGLVKNSFFHGLNPYEMLVHAISSREVIVRSSRGL 779

Query: 661  TEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYLDD-AVDSANIAPAGEPVGVLA 485
            TEPGTLFKNLMAILRDVVICYDG+VRN CTGS+VQ EY+DD  V+S N  PAG+PVGVLA
Sbjct: 780  TEPGTLFKNLMAILRDVVICYDGSVRNVCTGSLVQLEYVDDEGVNSVNTPPAGDPVGVLA 839

Query: 484  ATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKTICR 305
            ATAIS  AYKAVLDSSQSNNSSWELMKEILLCKV+Y+NDVSDRRVILYLNDC C+K  C+
Sbjct: 840  ATAISNLAYKAVLDSSQSNNSSWELMKEILLCKVSYKNDVSDRRVILYLNDCCCQKRFCK 899

Query: 304  EKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLLNQN 125
            E AA+TVLNCLK+V+LK+CA +F IEY+ QI + +SSV TSGLVGHIHLDK+QLKLLN N
Sbjct: 900  ENAAFTVLNCLKRVTLKDCAHEFLIEYQKQIGVCDSSVTTSGLVGHIHLDKMQLKLLNIN 959

Query: 124  TDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
             D IL KCQ VIFSYGKKKGQLSHFF+R+ LS  +C S KQ
Sbjct: 960  PDDILHKCQAVIFSYGKKKGQLSHFFRRIFLSTCKCCSIKQ 1000


>ref|XP_009391189.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009391190.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1738

 Score = 1453 bits (3761), Expect = 0.0
 Identities = 724/1001 (72%), Positives = 845/1001 (84%), Gaps = 4/1001 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M+D+++S LVLDGS+ SIKFS+AT+EEI+TYSI+ CPISHPSQLANPFLG+PLESG CE+
Sbjct: 1    MEDQVSSPLVLDGSICSIKFSIATAEEIRTYSISDCPISHPSQLANPFLGLPLESGGCET 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKSTS- 2636
            CGT EIGNCEGHFG+IELPIPVYHPSHVSELRD+LS +CLKCLRMKKVKY   K K +S 
Sbjct: 61   CGTAEIGNCEGHFGYIELPIPVYHPSHVSELRDLLSLVCLKCLRMKKVKYSVGKGKISSM 120

Query: 2635 -CIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSCRPLLP 2459
             C+YC DLP ISI+EVKT+D A  LEL V  ++R+ + FW+FLDR+G+HY GT  RPLLP
Sbjct: 121  PCLYCLDLPSISIKEVKTADGATCLELRVSSRSRLQDGFWSFLDRFGYHYAGTFRRPLLP 180

Query: 2458 HEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDISRP 2279
             EAL +L+++PEE+ KKL GKGYF Q G IME LPVPPNCLCVPEISDGKCVMSSDIS+ 
Sbjct: 181  SEALKILEKLPEETQKKLAGKGYFLQNGFIMERLPVPPNCLCVPEISDGKCVMSSDISKS 240

Query: 2278 LLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFVLSH 2099
            LLKK+L KI+LIKRSRSGSP+FES+ +E N+LQS IA Y+ LRGTTK+P D  RRF   +
Sbjct: 241  LLKKILGKIELIKRSRSGSPSFESYEVETNDLQSSIALYMNLRGTTKAPRDITRRFAFGN 300

Query: 2098 ESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEERVTE 1919
            E+NE  TKQWL+KIRTLFIRKGSGFSSR VI+GDPYIG++V+GLPSEIAKRITFEERVTE
Sbjct: 301  ETNEYLTKQWLDKIRTLFIRKGSGFSSRSVISGDPYIGINVVGLPSEIAKRITFEERVTE 360

Query: 1918 HNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINRPPS 1739
            HNI RLQN+VD R CITYKDGS TYAIS+GSKGHT+LK+GQ+INRQI++GDIVFINRPPS
Sbjct: 361  HNITRLQNVVDSRLCITYKDGSSTYAISVGSKGHTNLKIGQVINRQILDGDIVFINRPPS 420

Query: 1738 THKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFSVEK 1559
            THKHSLQAF+VYIHDDHTVKINPLICA LGADFDGDCVHIFYPQSLSAKAEV+ELFSVEK
Sbjct: 421  THKHSLQAFYVYIHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLSAKAEVLELFSVEK 480

Query: 1558 QLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANKYGP 1379
            QLL SHSG LN+QLV D+ LALKLI    F+KK VAQQL M+    LP P I++A K GP
Sbjct: 481  QLLSSHSGSLNLQLVQDASLALKLIFKSGFIKKEVAQQLGMYVSSMLPPPAIVKATKCGP 540

Query: 1378 SRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRGPKD 1199
              T LQ+LQN+ P FLD SGE +  I +SEIL+LD+ +D+VQ LLTDI + I+ M+GP +
Sbjct: 541  CWTILQVLQNVFPAFLDCSGERY-FIRESEILELDTDQDVVQSLLTDIMTHIYHMKGPME 599

Query: 1198 VLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYNELV 1019
            VLNFFNYIQPLLMEMLF+EGFSI LKDF + K+V+ EI+ SIQ+ SCI+NQLRS  +E  
Sbjct: 600  VLNFFNYIQPLLMEMLFMEGFSICLKDFILSKAVVSEIQGSIQKNSCILNQLRSRRDERA 659

Query: 1018 QLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKYYSR 842
            +LQVQN+L+++K PI+ F+   SA+GNLID KSDS++ KVVEQ+GFL LQLFDQGKYYSR
Sbjct: 660  ELQVQNHLRSMKDPIVKFILNSSALGNLIDSKSDSSMVKVVEQLGFLGLQLFDQGKYYSR 719

Query: 841  VLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXXRGL 662
             LV+DCF+N+V+KHS    + PSE+YGLV+NSFFHGL P+E LVH            RGL
Sbjct: 720  ALVDDCFLNFVSKHSAGEVDHPSEAYGLVKNSFFHGLNPYEMLVHAISSREVIVRSSRGL 779

Query: 661  TEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYLDD-AVDSANIAPAGEPVGVLA 485
            TEPGTLFKNLMAILRDVVICYDG+VRN CTGS+VQ EY+DD  V+S N  PAG+PVGVLA
Sbjct: 780  TEPGTLFKNLMAILRDVVICYDGSVRNVCTGSLVQLEYVDDEGVNSVNTPPAGDPVGVLA 839

Query: 484  ATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKTICR 305
            ATAIS  AYKAVLDSSQSNNSSWELMKEILLCKV+Y+NDVSDRRVILYLNDC C+K  C+
Sbjct: 840  ATAISNLAYKAVLDSSQSNNSSWELMKEILLCKVSYKNDVSDRRVILYLNDCCCQKRFCK 899

Query: 304  EKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLLNQN 125
            E AA+TVLNCLK+V+LK+CA +F IEY+ QI + +SSV TSGLVGHIHLDK+QLKLLN N
Sbjct: 900  ENAAFTVLNCLKRVTLKDCAHEFLIEYQKQIGVCDSSVTTSGLVGHIHLDKMQLKLLNIN 959

Query: 124  TDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
             D IL KCQ VIFSYGKKKGQLSHFF+R+ LS  +C S KQ
Sbjct: 960  PDDILHKCQAVIFSYGKKKGQLSHFFRRIFLSTCKCCSIKQ 1000


>ref|XP_010932322.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_010932323.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_019708936.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
 ref|XP_019708937.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Elaeis
            guineensis]
          Length = 1708

 Score = 1403 bits (3631), Expect = 0.0
 Identities = 690/1002 (68%), Positives = 833/1002 (83%), Gaps = 5/1002 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++ + S L+ DGSV  I FS AT EEI+T SIN CP+SHPSQL NPFLG+PLE G+CES
Sbjct: 1    MEEHVPSPLISDGSVRGISFSAATIEEIRTCSINDCPVSHPSQLTNPFLGLPLEFGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMK-KVKYGAAKDK--S 2642
            CGT E G CEGHFG+IELP+PVYHPSHVSELR ILS +CLKC+RMK KVK+G  K+K  +
Sbjct: 61   CGTAEPGKCEGHFGYIELPVPVYHPSHVSELRQILSLVCLKCMRMKGKVKHGNGKEKVTT 120

Query: 2641 TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSCRPLL 2462
            TSC+YCRDLPPIS++EVKT+D A+ LEL V  +TR+ + FW FLDR+GF YG T CRPLL
Sbjct: 121  TSCLYCRDLPPISVKEVKTTDNALCLELRVSSRTRLRDGFWKFLDRFGFCYGDTYCRPLL 180

Query: 2461 PHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDISR 2282
            P+EALN+LK+IP+E+ K+L  KGYFPQ G I+++LPVPPNCLCVPE+SDGK +MSSDIS 
Sbjct: 181  PYEALNILKEIPQETKKRLAAKGYFPQIGFILQYLPVPPNCLCVPEVSDGKSIMSSDISI 240

Query: 2281 PLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFVLS 2102
             LLK+VLNKI+LIKRSRSG PNF+SH +E+N+LQS I+QY+ LRGT K P D  ++F + 
Sbjct: 241  SLLKRVLNKIELIKRSRSGFPNFKSHEVESNDLQSSISQYMHLRGTPKVPQDITKKFAIG 300

Query: 2101 HESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEERVT 1922
             E+NE  TK WLEK+RTLFIRKGSGFSSR VITGD YIGV+V+GLPSEIAKRITFEERVT
Sbjct: 301  TEANECSTKLWLEKMRTLFIRKGSGFSSRSVITGDAYIGVNVIGLPSEIAKRITFEERVT 360

Query: 1921 EHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINRPP 1742
             HN+ +LQ +VDK  C+TYKDG  TYAI++GSKGHT LKVGQ+INR+I++GDIVFINRPP
Sbjct: 361  VHNMKQLQEVVDKGLCVTYKDGFSTYAIAVGSKGHTYLKVGQVINRRIMDGDIVFINRPP 420

Query: 1741 STHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFSVE 1562
            STHKHSLQAF+VY+HDDHTVKINPLICA LGADFDGDCVHIFYPQSL+AKAEV+ELFSVE
Sbjct: 421  STHKHSLQAFYVYVHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLAAKAEVLELFSVE 480

Query: 1561 KQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANKYG 1382
            KQLL SH+G LN+QLVHD+LLALKL+SN +FL+KT A+QLAM   P LP P I +A+K G
Sbjct: 481  KQLLSSHTGNLNLQLVHDTLLALKLMSNAAFLRKTTAEQLAMFVSPILPPPAIFKAHKSG 540

Query: 1381 PSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRGPK 1202
            P  T  QILQN LP FLD  GE H  IS  EI+KLD  +D VQ L T+I ++I  M+GPK
Sbjct: 541  PFWTVHQILQNALPTFLDCFGERH-LISNGEIIKLDLRRDAVQSLFTEIITSIFIMKGPK 599

Query: 1201 DVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYNEL 1022
            + LNFFN +QPLLME+L +EGFSISL+DF +P +V+E+ ++S+QE S I++QLRS YNEL
Sbjct: 600  EALNFFNMLQPLLMEVLVMEGFSISLQDFYVPSAVIEKAQQSVQENSFILDQLRSKYNEL 659

Query: 1021 VQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKYYS 845
            V+LQV+N+LK++K PI++F+   +++GNLID KSDS++ KVV+Q+GFL LQLFD+GK YS
Sbjct: 660  VELQVENHLKSIKLPIVNFILNLTSLGNLIDSKSDSSIIKVVQQLGFLGLQLFDRGKLYS 719

Query: 844  RVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXXRG 665
            R LVEDCF N+V K+ST   +   E+YGLV+N FFHGL P+EELVH            RG
Sbjct: 720  RALVEDCFTNFVNKYSTSGADHSCEAYGLVKNCFFHGLNPYEELVHAISSREVIVRSSRG 779

Query: 664  LTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPVGVL 488
            LTEPGTLFKNLMAILRDV+ICYDG+VRN C+ SI+QFEY  DD  +S N++PAGEPVGVL
Sbjct: 780  LTEPGTLFKNLMAILRDVIICYDGSVRNVCSNSIIQFEYGEDDGANSLNVSPAGEPVGVL 839

Query: 487  AATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKTIC 308
            AATAIS PAYKAVL+SSQSNNSSWELMKEILLCKV ++N V+DRRVILYLNDC C K  C
Sbjct: 840  AATAISNPAYKAVLESSQSNNSSWELMKEILLCKVTFKNVVTDRRVILYLNDCLCGKKFC 899

Query: 307  REKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLLNQ 128
            +E AA  V NCLK+V+LK+CACDFSIEY+ +I+L +SS  TSGLVGHIHLDK++LKLLN+
Sbjct: 900  KENAAIAVQNCLKRVTLKDCACDFSIEYQKEISLRDSSETTSGLVGHIHLDKMRLKLLNR 959

Query: 127  NTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            + D ILRKCQDVIF YGKKKG+LSHFF+R+ LS +EC ST+Q
Sbjct: 960  SPDEILRKCQDVIFGYGKKKGKLSHFFRRIILSLSECCSTRQ 1001


>gb|AIO05699.1| DNA-directed RNA polymerase V subunit 1, partial [Cocos nucifera]
          Length = 1673

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 684/1002 (68%), Positives = 829/1002 (82%), Gaps = 5/1002 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++ + S L+ DGSV  I FS AT EEI+ Y+IN CP+SHPSQL NPFLG+PLE G+CES
Sbjct: 1    MEENIPSPLISDGSVRGISFSAATFEEIRKYAINDCPVSHPSQLTNPFLGLPLEFGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMK-KVKYGAAKDK--S 2642
            CGT E G CEGHFG+IELP+PVYHPSHVSELR ILS +CLKC+RMK KVK+G+ K+K  +
Sbjct: 61   CGTAEPGKCEGHFGYIELPVPVYHPSHVSELRQILSLVCLKCMRMKGKVKHGSGKEKVST 120

Query: 2641 TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSCRPLL 2462
            TSC+YCRDLPPIS++EVKT+D A+ LEL V  +TR+ + FW FLDR+GF YG T CRPLL
Sbjct: 121  TSCLYCRDLPPISVKEVKTTDNALCLELRVSSRTRLRDGFWKFLDRFGFCYGDTYCRPLL 180

Query: 2461 PHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDISR 2282
            P+EALN+LK+IPEE+ K+L  KGYFPQ G I+++LPVPPNCLCVPE+SDGK +MSSDIS 
Sbjct: 181  PYEALNILKEIPEETKKRLAAKGYFPQIGFILQYLPVPPNCLCVPEVSDGKSIMSSDISI 240

Query: 2281 PLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFVLS 2102
             LLK+VLNKI+LIKRSRSG PNF+SH +E+N+LQS I+QY+ LRGT K P D  ++F + 
Sbjct: 241  SLLKRVLNKIELIKRSRSGFPNFKSHEVESNDLQSSISQYMHLRGTPKVPQDITKKFAIG 300

Query: 2101 HESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEERVT 1922
             E+NE  TK WLEK+RTLFIRKGSGFSSR VITGD YIGV+V+GLPSEIAKRITFEERVT
Sbjct: 301  TEANECSTKLWLEKMRTLFIRKGSGFSSRSVITGDAYIGVNVIGLPSEIAKRITFEERVT 360

Query: 1921 EHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINRPP 1742
             HN+ +LQ +VDK  C+TYKDG  TYAI++GSKGHT LKVGQ+INR+I++GDIVFINRPP
Sbjct: 361  VHNMKQLQEVVDKGLCVTYKDGFSTYAIAVGSKGHTYLKVGQVINRRIMDGDIVFINRPP 420

Query: 1741 STHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFSVE 1562
            STHKHSLQAF+VY+HDDHTVKINPLICA LGADFDGDCVHIFYPQS +AKAEV+ELFSVE
Sbjct: 421  STHKHSLQAFYVYVHDDHTVKINPLICAPLGADFDGDCVHIFYPQSFAAKAEVLELFSVE 480

Query: 1561 KQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANKYG 1382
            KQLL SH+G LN+QLVHD+LLALKL+SN +FL+KT+A+QLAM   P LP P I +A+K G
Sbjct: 481  KQLLSSHTGNLNLQLVHDTLLALKLMSNTAFLRKTMAEQLAMFVSPILPPPAIFKAHKSG 540

Query: 1381 PSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRGPK 1202
            P  T  QILQN LP  LD  GE H  IS SEI+KLD  +D VQ L T+I ++I   +GPK
Sbjct: 541  PFWTVHQILQNALPALLDCFGERH-LISDSEIIKLDLRRDAVQPLFTEIITSIFIKKGPK 599

Query: 1201 DVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYNEL 1022
            + LNFFN +QPLLME+L +EGFSISLKDF +P +V+++ +R++QE S I++QLRS YNEL
Sbjct: 600  EALNFFNMLQPLLMEVLVMEGFSISLKDFYVPSAVIKKAQRNVQENSFILDQLRSKYNEL 659

Query: 1021 VQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKYYS 845
            V+LQV+N+LK++K PI++F+   +++G LID KSDS++ KVV+Q+GFL LQLFD+GK YS
Sbjct: 660  VELQVENHLKSIKLPIVNFILNLTSLGYLIDSKSDSSIIKVVQQLGFLGLQLFDRGKLYS 719

Query: 844  RVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXXRG 665
              LVEDCF N+V K+ST   +   E+YGLV+N FFHGL P+EELVH            RG
Sbjct: 720  GALVEDCFTNFVNKYSTSGADHSCEAYGLVKNCFFHGLNPYEELVHAISSREVIVRSSRG 779

Query: 664  LTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPVGVL 488
            LTEPGTLFKNLMAILRDV+ICYDG+VRN C+ SI+QFEY  DD  +S N++PAGEPVGVL
Sbjct: 780  LTEPGTLFKNLMAILRDVIICYDGSVRNVCSNSIIQFEYGEDDGANSLNVSPAGEPVGVL 839

Query: 487  AATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKTIC 308
            AATAIS PAYKAVL+SSQSNNSSWELMKEILLCKV ++N V+DRRVILYLNDC+C K  C
Sbjct: 840  AATAISNPAYKAVLESSQSNNSSWELMKEILLCKVMFKNVVTDRRVILYLNDCFCGKKFC 899

Query: 307  REKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLLNQ 128
            +E AA  V NCLK+V+LK+CACDFSIEY+ +I+L +SS  TSGLVGHIHLDK+ LKLLN+
Sbjct: 900  KENAAIAVQNCLKRVTLKDCACDFSIEYQKEISLRDSSETTSGLVGHIHLDKMGLKLLNR 959

Query: 127  NTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            + D ILRKCQDVIF Y KKKG+LSHFF+R+ LS +EC  T+Q
Sbjct: 960  SPDEILRKCQDVIFGYAKKKGKLSHFFRRIILSLSECCCTRQ 1001


>ref|XP_020090098.1| DNA-directed RNA polymerase V subunit 1 [Ananas comosus]
          Length = 1800

 Score = 1313 bits (3398), Expect = 0.0
 Identities = 653/1003 (65%), Positives = 808/1003 (80%), Gaps = 6/1003 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++   S  V DG + SI FS AT EEI  YSI+ CPISHPSQL NPFLG+PLESG+CES
Sbjct: 4    MEEDRASPFVSDGRIRSIMFSAATDEEICIYSISECPISHPSQLTNPFLGLPLESGKCES 63

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKK--VKYGAAKDK-- 2645
            CGT E G CEGHFG+IELPIP+YHPS+VSEL+ I S +CLKCLRMKK  VK+   KD   
Sbjct: 64   CGTAEHGKCEGHFGYIELPIPIYHPSYVSELKQIFSLVCLKCLRMKKGKVKHTNGKDSVS 123

Query: 2644 STSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSCRPL 2465
            +T+C +CRDL  IS++EVKT+D A+SLEL VP + R+ + FWNFLDR+GFHYG + CRPL
Sbjct: 124  TTTCFFCRDLS-ISVKEVKTTDGALSLELRVPSRKRLRDGFWNFLDRFGFHYGDSFCRPL 182

Query: 2464 LPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDIS 2285
            LP EALN+LK+IPEE+ +KL  KGYFPQ G IM+HLPVPPNCL VPE SDGK +MS DIS
Sbjct: 183  LPCEALNILKEIPEETRRKLATKGYFPQTGYIMQHLPVPPNCLYVPEFSDGKSIMSFDIS 242

Query: 2284 RPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFVL 2105
              LLK+VLNKI++IKRSRSGSPNFESH +E+ +LQS +AQY+ LRGTTK P D+KR F++
Sbjct: 243  IALLKRVLNKIEMIKRSRSGSPNFESHEVESTDLQSSVAQYMHLRGTTKGPQDSKR-FMI 301

Query: 2104 SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEERV 1925
              E+NE  TKQWLEK+RTLFIRKGSGFSSR VITGD YIG++V+GLPSEIAK+ITFEERV
Sbjct: 302  GMEANECSTKQWLEKMRTLFIRKGSGFSSRSVITGDAYIGINVIGLPSEIAKKITFEERV 361

Query: 1924 TEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINRP 1745
            TEHN+ RLQ +VD R C+TY+DG+ TYAIS+GSKGHT LK+GQI+NR+IV+GDIVFINRP
Sbjct: 362  TEHNMKRLQEVVDNRLCVTYRDGASTYAISVGSKGHTCLKIGQIVNRRIVDGDIVFINRP 421

Query: 1744 PSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFSV 1565
            PSTHKHSLQAF+VY+HDDHTVKINPLICA LGADFDGDCVHIFYPQSL+AKAEVVELFSV
Sbjct: 422  PSTHKHSLQAFYVYVHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLAAKAEVVELFSV 481

Query: 1564 EKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANKY 1385
            EKQLL SH+G LN+QLV+DSLLALKL+   +F++K  AQQLAM   P LP P I +++  
Sbjct: 482  EKQLLSSHTGNLNLQLVNDSLLALKLLYLKTFIRKETAQQLAMFVSPNLPPPAIYKSHNS 541

Query: 1384 GPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRGP 1205
            GP  T  Q+LQ  LP   D  GE+H  IS SE++KLD   D VQ   ++I S+I  ++GP
Sbjct: 542  GPCWTASQVLQCALPSLFDSFGEKH-QISCSEMIKLDFDVDFVQSCFSEIISSIFTIKGP 600

Query: 1204 KDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYNE 1025
            K+ LNFFN +QPLLME LF++GFSISLKDF +PK+V++ +++SIQ  S I+++ R + N+
Sbjct: 601  KEALNFFNVLQPLLMETLFLDGFSISLKDFHVPKAVIQGVQKSIQRNSYILDKTRYTQNQ 660

Query: 1024 LVQLQVQNYLKNLKAPILDF-VQFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKYY 848
             V+++V+N+LK++K PI++F V+FS++G LID KSDSA+AKV++Q+GFL LQLF +GK+Y
Sbjct: 661  FVEMRVENHLKSIKQPIVEFIVKFSSLGYLIDSKSDSAIAKVLQQLGFLGLQLFHEGKFY 720

Query: 847  SRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXXR 668
            S  LVEDCF  +V + ST   + P E+YGLV++SF++GL P+EELVH            R
Sbjct: 721  SSRLVEDCFSTFVNRFSTGGDKHPCEAYGLVKSSFYNGLNPYEELVHAISSREVLVRSSR 780

Query: 667  GLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPVGV 491
            GLTEPGTLFKNLMAILRDVVICYDG+VRN C+ S++QF+Y  DD VD   ++P GEPVGV
Sbjct: 781  GLTEPGTLFKNLMAILRDVVICYDGSVRNVCSNSVIQFDYGDDDRVDLIGLSPPGEPVGV 840

Query: 490  LAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKTI 311
            LAATAIS PAYKAVLDSSQSNNSSWELMKEILL KV+Y+NDV+DRRVILYLNDC+C K  
Sbjct: 841  LAATAISNPAYKAVLDSSQSNNSSWELMKEILLTKVSYKNDVNDRRVILYLNDCFCGKKF 900

Query: 310  CREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLLN 131
            C+E+AA  V +CLK+V+L++C  DF IEY+ +I L  +   TSGLVGHIHLDK+QL+ LN
Sbjct: 901  CKERAALAVQSCLKRVTLEDCVTDFLIEYQKEIILPGNPEPTSGLVGHIHLDKMQLESLN 960

Query: 130  QNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            ++ D +L  C++VI    KKKGQ SH FK++TL A+EC S ++
Sbjct: 961  RSIDEVLHTCEEVILKNAKKKGQFSHLFKKITLMASECCSIQK 1003


>ref|XP_020269146.1| DNA-directed RNA polymerase V subunit 1 [Asparagus officinalis]
 ref|XP_020269147.1| DNA-directed RNA polymerase V subunit 1 [Asparagus officinalis]
          Length = 1945

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 632/1006 (62%), Positives = 774/1006 (76%), Gaps = 9/1006 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++ + S ++ DG   +IKFS+AT+EE+  YSIN CPISHPSQL NPFLG+PLESG+CES
Sbjct: 1    MEENVISPVISDGIARAIKFSIATAEEVCKYSINDCPISHPSQLTNPFLGLPLESGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CGT E GNCEGHFG+IELP+PVYHP H+SELRDILS +C  C+R KK   G  KDK+   
Sbjct: 61   CGTAESGNCEGHFGYIELPVPVYHPLHISELRDILSLVCFHCMRTKK---GKIKDKAGKS 117

Query: 2641 -----TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS 2477
                 TSC +CRD+PPISI+EVKTSD A+ L+L V  K R+ E FWNFL +YGF +G  +
Sbjct: 118  SNSAATSCSHCRDIPPISIKEVKTSDGAVCLQLTVSSKLRLREGFWNFLSKYGFRHGDGT 177

Query: 2476 CRPLLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMS 2297
            CR LLP EALN+LK+IPEE+ K+LV KGYFPQ G I+++LPVPPNCL VPEISDGK VMS
Sbjct: 178  CRTLLPLEALNILKEIPEETKKRLVAKGYFPQDGYILQYLPVPPNCLLVPEISDGKSVMS 237

Query: 2296 SDISRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKR 2117
            SDIS  LLK+VL+KI+LIKRSRSGSPNFESH +E N+LQ  IA+Y+ LRG+ K+PHD  +
Sbjct: 238  SDISISLLKRVLSKIELIKRSRSGSPNFESHEVECNDLQLVIAEYMHLRGSAKAPHDVSK 297

Query: 2116 RFVLSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITF 1937
            + VL  ++ +  +KQWLEKIRTLFI KGSGFSSR VITGD YIG++ +GLPSEIAK++TF
Sbjct: 298  KLVLGPDAGKNSSKQWLEKIRTLFISKGSGFSSRSVITGDSYIGINEIGLPSEIAKKVTF 357

Query: 1936 EERVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVF 1757
            EERVT HN+ RLQ +V+   C+TY+DG  TYAI++GSK HT LKVGQ+I+R IV+GDIVF
Sbjct: 358  EERVTAHNLERLQKMVNDGLCVTYRDGKSTYAIAVGSKAHTILKVGQVISRSIVDGDIVF 417

Query: 1756 INRPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVE 1577
            INRPPSTHKHSLQAF VY+HDDHTVKINPL+CA LGADFDGDCVHIFYPQSL+AKAEVVE
Sbjct: 418  INRPPSTHKHSLQAFTVYVHDDHTVKINPLVCAPLGADFDGDCVHIFYPQSLAAKAEVVE 477

Query: 1576 LFSVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIE 1397
            LFSV++QLL SHSG+LN QLV DSLL+LKL++N SFL+K  AQQL M   P LP P +  
Sbjct: 478  LFSVDQQLLSSHSGQLNFQLVSDSLLSLKLMANSSFLRKEKAQQLGMFVSPVLPPPAVFR 537

Query: 1396 ANKYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQ 1217
            A   G   T  QILQ+ LP  +D +G+ H  I+QSEILK + ++D +Q  LTDI ++I  
Sbjct: 538  ACGSGSLWTIYQILQSALPPSVDCTGQRH-VINQSEILKFEFNRDFLQSSLTDIITSILV 596

Query: 1216 MRGPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRS 1037
             +GPK  LNFFN +QPLLME+L +EGFS+SL+DF IP  VL E++  IQ+I+  + QLR 
Sbjct: 597  AKGPKAALNFFNSLQPLLMEVLQLEGFSVSLQDFYIPNPVLREVKDGIQDIASFVPQLRM 656

Query: 1036 SYNELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQ 860
            SY+EL+ LQV+  L  LK PI+ F+   S++G +ID KS+S+++KV++QIGFL LQLF +
Sbjct: 657  SYDELLGLQVEKDLNRLKIPIVAFILHSSSLGYVIDSKSESSISKVLQQIGFLGLQLFVK 716

Query: 859  GKYYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXX 680
            GK YS+ LVED    +V++ ST      SE++GLV+N  FHGL PFE+ VH         
Sbjct: 717  GKLYSKALVEDIHHLFVSRFSTTDVSPSSEAHGLVKNPLFHGLNPFEDFVHSISAREVII 776

Query: 679  XXXRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYLDDAVDSANIAPAGEP 500
               RGLTEPG LFKNLMAILRDVVICYDGTVRN C+ SI+Q  Y  D   +  +A AGEP
Sbjct: 777  RSSRGLTEPGVLFKNLMAILRDVVICYDGTVRNVCSNSIIQLAYELDEARAECVATAGEP 836

Query: 499  VGVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCR 320
            VGVLAATAIS PAYKAVLDSS S NSSWELMKEILLCK AY+N   DRR++LYLNDC C 
Sbjct: 837  VGVLAATAISNPAYKAVLDSSSSTNSSWELMKEILLCKAAYQNAFIDRRIVLYLNDCCCG 896

Query: 319  KTICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLK 140
            K  CRE +A  V NCL+ V+LK CA DFSIEY+ QI L NS+ V SGLVGH+HLD  +LK
Sbjct: 897  KKFCRENSALAVQNCLRSVTLKHCAIDFSIEYQKQICLPNSATV-SGLVGHLHLDTTRLK 955

Query: 139  LLNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            +LNQNTD +L KCQ+VI  + +KKG LS+  +R  LSA+E  S+ Q
Sbjct: 956  ILNQNTDGVLHKCQEVIRGHTRKKGHLSNILRRTFLSASEDCSSLQ 1001


>ref|XP_008812396.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
            1-like [Phoenix dactylifera]
          Length = 1656

 Score = 1240 bits (3208), Expect = 0.0
 Identities = 612/894 (68%), Positives = 743/894 (83%), Gaps = 4/894 (0%)
 Frame = -3

Query: 2671 VKYGAAKDK--STSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYG 2498
            VK+G+ K+K  +TSC+YCRDLPPIS++EVKT+D A+ LEL V  +TR+ + FWNFL+R+G
Sbjct: 67   VKHGSGKEKVSTTSCLYCRDLPPISVKEVKTTDNALCLELRVSSRTRLRDGFWNFLNRFG 126

Query: 2497 FHYGGTSCRPLLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEIS 2318
            F YG T CRPLLP+EALN+LK+IPEE+ K+L  KGYFPQ G I+++LPVPPNCLCVPEIS
Sbjct: 127  FCYGDTYCRPLLPYEALNILKEIPEETKKRLAAKGYFPQIGFILQYLPVPPNCLCVPEIS 186

Query: 2317 DGKCVMSSDISRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTK 2138
            DGK +MSSDIS  LLK+VLNKI+LIKRSRSG PNF+SH +E+N+LQ  I+QY+RLRGT K
Sbjct: 187  DGKNIMSSDISISLLKRVLNKIELIKRSRSGFPNFKSHEVESNDLQLSISQYMRLRGTPK 246

Query: 2137 SPHDTKRRFVLSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSE 1958
             P D  ++F +  E+NE  TK WLEK+RTLFIRKGSGFSSR VITGD YIGV+V+GLPSE
Sbjct: 247  VPQDITKKFAIGTEANECSTKLWLEKMRTLFIRKGSGFSSRSVITGDAYIGVNVIGLPSE 306

Query: 1957 IAKRITFEERVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQI 1778
            IAKRITFEERVT HN+ +LQ +VDK  C+TYKDG  TYAI++GSKGHT LKVGQ+INR+I
Sbjct: 307  IAKRITFEERVTVHNMKQLQEVVDKGLCVTYKDGFSTYAIAVGSKGHTYLKVGQVINRRI 366

Query: 1777 VNGDIVFINRPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLS 1598
            ++GDIVFINRPPSTHKHSLQAF+VY+HDDHTVKINPLICA LGADFDGDCVHIFYPQSL+
Sbjct: 367  MDGDIVFINRPPSTHKHSLQAFYVYVHDDHTVKINPLICAPLGADFDGDCVHIFYPQSLA 426

Query: 1597 AKAEVVELFSVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPAL 1418
            AKAEV+ELFSVEKQLL SH+G LN+QLVHD+LLALKL+ N +FL+K  A+QLAM   P L
Sbjct: 427  AKAEVLELFSVEKQLLSSHTGNLNLQLVHDTLLALKLMFNTAFLRKATAEQLAMFVSPIL 486

Query: 1417 PLPTIIEANKYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTD 1238
            P P I +ANK GP  T  QILQN LP F+D  GE H  I  SEI+KLD  +D VQ L T+
Sbjct: 487  PPPAIFKANKSGPFWTVHQILQNALPAFVDCFGERH-LIIDSEIIKLDFRRDAVQSLFTE 545

Query: 1237 IPSAIHQMRGPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISC 1058
            I ++I   + PK+ LNFFN +QP LME+L +EGFSISLKDF +P+ VLE+ ++S+QE S 
Sbjct: 546  IITSIFIKKSPKEALNFFNMLQPFLMEVLVMEGFSISLKDFYVPREVLEKAQQSVQENSF 605

Query: 1057 IMNQLRSSYNELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFL 881
            I++QLRS YNELV+LQV+N+LK++K PI++F+  F+++GNLID KSDS++ KVV+Q+GFL
Sbjct: 606  ILHQLRSKYNELVELQVENHLKSIKLPIVNFILNFTSLGNLIDSKSDSSIIKVVQQLGFL 665

Query: 880  SLQLFDQGKYYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXX 701
             LQLFD+GK YSR LVEDCF N+V K+ST   +   E+YGLV+N FFHGL P+EELVH  
Sbjct: 666  GLQLFDRGKLYSRALVEDCFTNFVNKYSTSGADHSCEAYGLVKNCFFHGLNPYEELVHSI 725

Query: 700  XXXXXXXXXXRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSA 524
                      RGLTEPGTLFKNLMAILRDV+ICYDG+VRN C+ S++QFEY  DD  +S 
Sbjct: 726  SSREVIVRSSRGLTEPGTLFKNLMAILRDVIICYDGSVRNVCSNSVIQFEYGEDDGANSL 785

Query: 523  NIAPAGEPVGVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVIL 344
            N++PAGEPVGVLAATAIS PAYKAVL+SSQSNNSSWELMKEILLCKV ++N V+DRRVIL
Sbjct: 786  NVSPAGEPVGVLAATAISNPAYKAVLESSQSNNSSWELMKEILLCKVTFKNVVTDRRVIL 845

Query: 343  YLNDCYCRKTICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHI 164
            YLNDC+C K  C+E AA TV NCLK+V+LK+CACDFSIEY+ +I+L +SS  TSGLVGHI
Sbjct: 846  YLNDCFCGKKFCKENAAITVQNCLKRVTLKDCACDFSIEYQKEISLRDSSETTSGLVGHI 905

Query: 163  HLDKIQLKLLNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            HLDK++LKLLN++ D ILRKCQDVIF YGKKKG+LSHFF+R+ L  +EC ST+Q
Sbjct: 906  HLDKMRLKLLNRSPDEILRKCQDVIFGYGKKKGKLSHFFRRIILLVSECCSTRQ 959


>ref|XP_015625443.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Oryza sativa
            Japonica Group]
          Length = 1962

 Score = 1196 bits (3095), Expect = 0.0
 Identities = 593/1004 (59%), Positives = 766/1004 (76%), Gaps = 7/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++ V +G++ SIK SL+T +EI+TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKK--VKYGAAKDKST 2639
            CG  E G CEGHFG+IELP+P+YHP HV+ELR IL+ +CLKCLR+KK  VK    KD ++
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 2638 --SCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CRP 2468
              SC YCRDLP +S++E+KT+D A  LEL +P +  + E  WNFLD+YGFH+GGTS CR 
Sbjct: 121  ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK+IPEE+ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IK+SR+GSPNFESH +E+ +LQ  IAQYI LRGTT+ P D  +RF 
Sbjct: 241  SISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFA 300

Query: 2107 LSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEER 1928
            +S + + L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE+
Sbjct: 301  ISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ 360

Query: 1927 VTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINR 1748
            VT+ N+ RLQ IVDK  C+TY+DG  TYAI++GSKGHT+LKVGQ I+R+IV+GD+VF+NR
Sbjct: 361  VTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNR 420

Query: 1747 PPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFS 1568
            PPSTHKHSLQAF VY+H+DHTVKINPLICA   ADFDGDCVHI+YPQSL+AKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 1567 VEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANK 1388
            VEKQL  SHSGK+N+QLV DSLLALK +S+ + L K  A QLAM    +LP P +I++  
Sbjct: 481  VEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSKP 540

Query: 1387 YGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRG 1208
            Y    T  QI+Q  LP  L   G++H  +  S I+KLD  K+ VQ   +D+  +   ++G
Sbjct: 541  YW---TISQIVQGALPKALTSQGDKH-VVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKG 596

Query: 1207 PKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYN 1028
            P + L F N +QPLLME++ ++GFS+SL+DF++PK +LEE +++I++ S I+ Q R + N
Sbjct: 597  PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAEN 656

Query: 1027 ELVQLQVQNYLKNLKAPILDF-VQFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKY 851
            ++V+++V N LK++K  I DF V+ S +G LID KSDS+V+KVV+Q+GF+ LQL+ +GK+
Sbjct: 657  QVVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKF 716

Query: 850  YSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXX 671
            YSR LVEDC+  +V KH     E   E+YGLVR+S+FHGL P+EELVH            
Sbjct: 717  YSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 776

Query: 670  RGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPVG 494
            RGLTEPGTLFKNLMA+LRDVVICYDGTVRN C+ SI+Q  Y  DDA+D  +    GEPVG
Sbjct: 777  RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVG 836

Query: 493  VLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKT 314
            VLAATAIS PAYKAVLD+SQSNN+SWE MKEIL     Y+ND+ DR+VIL+LNDC C K 
Sbjct: 837  VLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKK 896

Query: 313  ICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLL 134
             C+EKAA  V  CL++++L++CA D  IEY+ QI L  +S     LVGHIHLD+  L+ +
Sbjct: 897  FCKEKAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLERI 956

Query: 133  NQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            N +T+ IL+KCQ+V   YGKKKG LS+ FK +T S  +C  T++
Sbjct: 957  NISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQK 1000


>gb|PAN04046.1| hypothetical protein PAHAL_A00310 [Panicum hallii]
          Length = 1978

 Score = 1192 bits (3084), Expect = 0.0
 Identities = 591/999 (59%), Positives = 757/999 (75%), Gaps = 7/999 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++LV +G++ SIK SL+T EEI TYSIN CP++HPSQLANPFLG+PLE+G+CE+
Sbjct: 1    MEEDQSAILVAEGAIKSIKLSLSTEEEICTYSINDCPVTHPSQLANPFLGLPLEAGKCEA 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDK---- 2645
            CG  E   CEGHFG+IELP+P+YHPSHVSELR +LS ICLKCLR+KK K   +K K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPSHVSELRQLLSLICLKCLRIKKGKVKQSKGKENGL 120

Query: 2644 STSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
            +TSC YCRD+P +S++E++T+D AI LEL  P +  + E  WNFLD+YG HYGG+S  RP
Sbjct: 121  ATSCFYCRDVPALSLKEIRTTDGAIRLELRAPPRKHMTERSWNFLDKYGHHYGGSSHERP 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNF+SH  E+ +LQ  I +YI LRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFKSHEEESCDLQLAIGKYIHLRGTTRGPQDNTKRFA 300

Query: 2107 LSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEER 1928
            +  +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE+
Sbjct: 301  VGTDSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ 360

Query: 1927 VTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINR 1748
            VT+ NI RLQ +VDK  C+TY+DG   YAI++GSKGHT+LKVGQ I R+IV+GD+VF+NR
Sbjct: 361  VTDININRLQEVVDKGLCLTYRDGQANYAITVGSKGHTTLKVGQTIRRRIVDGDVVFLNR 420

Query: 1747 PPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFS 1568
            PPSTHKHSLQAF+ Y+HDDHTVKINPLIC    ADFDGDCVHI+YPQSL+AKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFYAYVHDDHTVKINPLICGPFSADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 1567 VEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANK 1388
            VEKQL+ SHSG +N+QL +DSL+A+KL+S+ + L K +A QLAM    +LP P +I   K
Sbjct: 481  VEKQLISSHSGTVNLQLGNDSLVAMKLMSSRTMLSKELANQLAMFIPFSLPPPAVI---K 537

Query: 1387 YGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRG 1208
              P+ T  QI+Q  LP  L   G+ H  I  S ++KLD  KD V    +D+ S++   +G
Sbjct: 538  SIPAWTITQIVQGALPAKLTCQGKTH-LIRDSTVIKLDLEKDCVHDSFSDLMSSLLSQKG 596

Query: 1207 PKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYN 1028
            P +VL F N +QPLLME L ++GFS+SLKDF++PK++ EE++R I++ S I+ Q R S +
Sbjct: 597  PGEVLQFLNVLQPLLMEFLLLDGFSVSLKDFNVPKAIYEEVQRHIRKQSLILEQSRFSKS 656

Query: 1027 ELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKY 851
            + V+++V+N LK++K  I DFV + S +G LID K DSA++KVV+Q+GF+ LQL+ +GK 
Sbjct: 657  QFVEMRVENNLKSIKQQISDFVAKCSDLGLLIDPKKDSAMSKVVQQLGFVGLQLYREGKL 716

Query: 850  YSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXX 671
            YS  LVEDCF N+V KHS    E P E+YGLV++S+FHGL P+EELVH            
Sbjct: 717  YSSRLVEDCFSNFVNKHSDIGEEHPPEAYGLVQSSYFHGLNPYEELVHAISTREAMVRSS 776

Query: 670  RGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPVG 494
            RGLTEPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  D  +  P GEPVG
Sbjct: 777  RGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDETDFPSALPPGEPVG 836

Query: 493  VLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKT 314
            VLAATAIS PAYKAVLDSSQSNN+SWE MKE L  K  Y ND+ DR+VIL+LNDC C K 
Sbjct: 837  VLAATAISNPAYKAVLDSSQSNNASWESMKETLQAKTGYNNDMKDRKVILFLNDCSCSKK 896

Query: 313  ICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLL 134
             C+E+AA TV +CL++V++ +C  D  IE++ QINL  +S     LVGHIHLDK QL+ +
Sbjct: 897  FCKERAALTVQSCLRRVTIADCTTDICIEHQKQINLDGTSEAAPSLVGHIHLDKAQLERI 956

Query: 133  NQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANEC 17
            N NT  IL+KC++V   YGKKKG L H  +++T +  +C
Sbjct: 957  NINTQDILQKCEEVSRRYGKKKGHLCHLLRKITFATCDC 995


>ref|XP_004951807.1| DNA-directed RNA polymerase V subunit 1 [Setaria italica]
          Length = 2038

 Score = 1187 bits (3071), Expect = 0.0
 Identities = 584/1000 (58%), Positives = 758/1000 (75%), Gaps = 8/1000 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++L  +G++ SIK SL+T EEI TYSIN CP++HPSQLANPFLG+PLE+G+CE+
Sbjct: 1    MEEDQSAILFAEGAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCEA 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKST-- 2639
            CG  E   CEGHFG+IELP+P+YHP H+SELR +LS IC KCLR+KK K      K T  
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHISELRQLLSLICFKCLRIKKGKVNKQNGKETAS 120

Query: 2638 ---SCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CR 2471
               SC YCRD+P +S++E KT+D AI LEL  P +  + E  WNFLD+YGFHYGG++  R
Sbjct: 121  ATLSCYYCRDIPALSLKETKTTDGAIRLELRAPPRKHMTERSWNFLDKYGFHYGGSAHSR 180

Query: 2470 PLLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSD 2291
             LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS D
Sbjct: 181  LLLPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 240

Query: 2290 ISRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRF 2111
            IS  LLKKVL KI+ IKRSRSGSPNFESH  E+ ++Q  + QYI LRGTT+ P D  +RF
Sbjct: 241  ISIALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQDNSKRF 300

Query: 2110 VLSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
             +  ++  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE
Sbjct: 301  AVGTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ +VDK  C+TY+DG  TYAI++GSKGHT+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQEVVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C+   ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVEKQL+ SHSG++N+QL +DSL+A+K +S+ + L K +A QLAM    +LP P +I   
Sbjct: 481  SVEKQLISSHSGQVNLQLGNDSLVAMKAMSSRTMLSKELANQLAMFVPFSLPAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  P+ T  QI+Q  LP  L   G+ H  +    I+KLD  KD VQ    D+ S++   +
Sbjct: 538  KSIPAWTITQIVQGALPAKLTCQGKTH-LVRDGNIIKLDLDKDHVQDSFNDLVSSVLSEK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GP + L F N +QPLLME L ++GFS++LKDF++PK++LEE+ ++IQ+ S I+ Q R S 
Sbjct: 597  GPGEALQFLNVLQPLLMEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSRFSK 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            +++ +++V+N LK +K  I +FV + S +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YS  LVEDCF N+V KHS    E P E+YGLV++S+FHGL P+EELVH           
Sbjct: 717  LYSSRLVEDCFSNFVNKHSDIGDEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPV 497
             RGLTEPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  D  +  P GEPV
Sbjct: 777  SRGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDETDFPSALPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAISTPAY+AVLDSSQSNN+SWE MKEIL  KV Y+ND+ DR+VIL+LNDC C K
Sbjct: 837  GVLAATAISTPAYRAVLDSSQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA TV +CL++V+L +CA D SIE++ QINL  +S     LVGHIHLDK QL+ 
Sbjct: 897  KFCKERAALTVQSCLRRVTLADCATDISIEHQKQINLDETSEAAPTLVGHIHLDKAQLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANEC 17
            +N +T  IL+KC+++   YGKKKG L H FK++T S  +C
Sbjct: 957  INISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDC 996


>ref|XP_006646896.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Oryza
            brachyantha]
          Length = 1993

 Score = 1184 bits (3064), Expect = 0.0
 Identities = 586/1004 (58%), Positives = 762/1004 (75%), Gaps = 7/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++ V +G++ SIK SLAT +EI+ YSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDQSAIPVAEGAIKSIKLSLATEDEIRIYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKK--VKYGAAKDKST 2639
            CG  E G CEGHFG+IELP+P+YHP HV+ELR IL+ +C KCLR+KK  VK+   KD ++
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNLVCFKCLRVKKGKVKHTEGKDNTS 120

Query: 2638 --SCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CRP 2468
              SC YCRDLP +S++E KT+D A+ LEL  P +  + E  WNFLD+YGFH+GGTS CR 
Sbjct: 121  ALSCYYCRDLPALSLKENKTADGAVRLELKAPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK+IP+E+ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKIPDETKRKLAARGYIAQPGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IK+SR+GSPNFESH +E+++LQ  IAQYI LRGTT+ P D  +RF 
Sbjct: 241  SISLLKKVLQKIEQIKKSRAGSPNFESHEVESSDLQLSIAQYIHLRGTTRGPQDNTKRFS 300

Query: 2107 LSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEER 1928
            +S +S+ L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVD++GLPSE+AKRITFEE+
Sbjct: 301  ISTDSSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDMVGLPSEVAKRITFEEQ 360

Query: 1927 VTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINR 1748
            VT  NI +LQ IVDK  C+TY+DG  TYAI++GSKGHT+LKVGQ I+R+IV+GDIVF+NR
Sbjct: 361  VTNININKLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDIVFLNR 420

Query: 1747 PPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFS 1568
            PPSTHKHSLQAF  Y+H+DHTVKINPLIC+   ADFDGDCVHI+YPQSL+AKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFRAYVHEDHTVKINPLICSPFAADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 1567 VEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANK 1388
            VEKQL  SHSGK+N+QL +DSLLALK +S  + L K VA QLAM+   +LP P +I++  
Sbjct: 481  VEKQLTSSHSGKVNLQLANDSLLALKHMSFRTILSKEVANQLAMNVTYSLPKPALIKSR- 539

Query: 1387 YGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRG 1208
              P  T  QI+Q  LP  L   G++H  +  S I+KLD  K+ VQ   +D+  +   ++G
Sbjct: 540  --PHWTIAQIVQGALPKDLTSQGDKH-LVRDSTIIKLDLDKESVQTSFSDLLYSTLSVKG 596

Query: 1207 PKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYN 1028
            P + L F N +QPLLME++ ++GFS+SL+DF++PK  L+E +++I++ S I+ Q R + N
Sbjct: 597  PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVHLQEAQKNIEKQSIILEQSRCAEN 656

Query: 1027 ELVQLQVQNYLKNLKAPILDF-VQFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKY 851
            + V+++V N LK++K  I DF V+ S +G LID KSD +V+KVV+Q+GF+ LQL+ +GK+
Sbjct: 657  QFVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDPSVSKVVQQLGFVGLQLYREGKF 716

Query: 850  YSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXX 671
            YSR LVEDCF N+V KH     E   E+YGLVR+S+FHGL P+EELVH            
Sbjct: 717  YSRRLVEDCFSNFVNKHPAVRKEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 776

Query: 670  RGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPVG 494
            RGLTEPGTLFKNLMA+LRDVVICYDGTVRN C+ SI+Q +Y  +DA+D  +    GEPVG
Sbjct: 777  RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLKYKEEDALDFPSAIAPGEPVG 836

Query: 493  VLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKT 314
            VLAATAIS PAYKAVLD+SQSNN+SWE MKEIL     Y+ND  DR++IL+LNDC C K 
Sbjct: 837  VLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTTRYKNDTKDRKIILFLNDCSCAKK 896

Query: 313  ICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLL 134
             C+EKAA  V  CL++++L++CA D  IEY+ QI+L  +S  +  LVGHIH D+  L+ +
Sbjct: 897  FCKEKAAIAVQGCLRRITLEDCATDICIEYQKQISLDGTSEASPALVGHIHFDRAHLERI 956

Query: 133  NQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            N + + I +KCQ+V   YGKKKG LSH FK +T S  +C  T++
Sbjct: 957  NVSIEDIFQKCQEVSGKYGKKKGHLSHLFKNITFSICDCSFTQK 1000


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score = 1182 bits (3059), Expect = 0.0
 Identities = 587/986 (59%), Positives = 755/986 (76%), Gaps = 7/986 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++ V +G++ SIK SL+T +EI+TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKK--VKYGAAKDKST 2639
            CG  E G CEGHFG+IELP+P+YHP HV+ELR IL+ +CLKCLR+KK  VK    KD ++
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 2638 --SCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CRP 2468
              SC YCRDLP +S++E+KT+D A  LEL +P +  + E  WNFLD+YGFH+GGTS CR 
Sbjct: 121  ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK+IPEE+ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IK+SR+GSPNFESH +E+ +LQ  IAQYI LRGTT+ P D  +RF 
Sbjct: 241  SISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFA 300

Query: 2107 LSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEER 1928
            +S + + L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE+
Sbjct: 301  ISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ 360

Query: 1927 VTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINR 1748
            VT+ N+ RLQ IVDK  C+TY+DG  TYAI++GSKGHT+LKVGQ I+R+IV+GD+VF+NR
Sbjct: 361  VTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNR 420

Query: 1747 PPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFS 1568
            PPSTHKHSLQAF VY+H+DHTVKINPLICA   ADFDGDCVHI+YPQSL+AKAE +ELFS
Sbjct: 421  PPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFS 480

Query: 1567 VEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANK 1388
            VEKQL  SHSGK+N+QLV DSLLALK +S+ + L K  A QLAM    +LP P +I++  
Sbjct: 481  VEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSKP 540

Query: 1387 YGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRG 1208
            Y    T  QI+Q  LP  L   G++H  +  S I+KLD  K+ VQ   +D+  +   ++G
Sbjct: 541  YW---TISQIVQGALPKALTSQGDKH-VVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKG 596

Query: 1207 PKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYN 1028
            P + L F N +QPLLME++ ++GFS+SL+DF++PK +LEE +++I++ S I+ Q R + N
Sbjct: 597  PGEALQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAEN 656

Query: 1027 ELVQLQVQNYLKNLKAPILDF-VQFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKY 851
            ++V+++V N LK++K  I DF V+ S +G LID KSDS+V+KVV+Q+GF+ LQL+ +GK+
Sbjct: 657  QVVEMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKF 716

Query: 850  YSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXXX 671
            YSR LVEDC+  +V KH     E   E+YGLVR+S+FHGL P+EELVH            
Sbjct: 717  YSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSS 776

Query: 670  RGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPVG 494
            RGLTEPGTLFKNLMA+LRDVVICYDGTVRN C+ SI+Q  Y  DDA+D  +    GEPVG
Sbjct: 777  RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVG 836

Query: 493  VLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRKT 314
            VLAATAIS PAYKAVLD+SQSNN+SWE MKEIL     Y+ND+ DR+VIL+LNDC C K 
Sbjct: 837  VLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKK 896

Query: 313  ICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKLL 134
             C+EKAA  V  CL++++L++CA D  IEY+ QI L  +S     LVGHIHLD+  L+ +
Sbjct: 897  FCKEKAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLERI 956

Query: 133  NQNTDTILRKCQDVIFSYGKKKGQLS 56
            N +T+ IL+KCQ+V   YGKKKG LS
Sbjct: 957  NISTEDILQKCQEVSGKYGKKKGHLS 982


>ref|XP_010238829.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brachypodium
            distachyon]
 gb|KQJ92654.1| hypothetical protein BRADI_4g45065v3 [Brachypodium distachyon]
          Length = 1954

 Score = 1179 bits (3050), Expect = 0.0
 Identities = 596/1005 (59%), Positives = 767/1005 (76%), Gaps = 8/1005 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  ++VLV +G++ SIK SL+T +EI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E G CEGHFG+IELP+P+YHP HVSELR +LS +CLKCLR+KK K   +  K    
Sbjct: 61   CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGKAKQSNGKENVS 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CRP 2468
             T+C YCRD+P +S++EVKT+D A  LEL  P +  + ++ WNFLD+YGFH+GG S  R 
Sbjct: 121  VTACSYCRDVPALSLKEVKTADGAFRLELRAPPRRLMKDSSWNFLDKYGFHHGGASHFRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK+IP+++ KKL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKIPDDTRKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKK+L++I+ IK+SR+G+PNFESH  E+++LQ  IAQYI LRGTTK P DTKR F 
Sbjct: 241  SISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDTKR-FT 299

Query: 2107 LSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEER 1928
            +S +S+ L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE+
Sbjct: 300  ISTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEEQ 359

Query: 1927 VTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFINR 1748
            VT+ NI RLQ +VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+NR
Sbjct: 360  VTDINIKRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNR 419

Query: 1747 PPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELFS 1568
            PPSTHKHSLQAF+VYIHDDHTVKINPLIC+ L ADFDGDCVHI+YPQSL+AKAE +ELFS
Sbjct: 420  PPSTHKHSLQAFYVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFS 479

Query: 1567 VEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEANK 1388
            VEKQL  SH+GK+N+QL +DSLLALK +S+ + L K  A QLAM    +LP P ++   K
Sbjct: 480  VEKQLTNSHNGKVNLQLSNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAVV---K 536

Query: 1387 YGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMRG 1208
              P  T  QI+Q  LP  L   G     +  S ++KLD +K+ VQ   +D+ S+I  ++G
Sbjct: 537  LKPCWTITQIIQGALPAALTCEGGRF-LVKDSTVIKLDLAKESVQASFSDLVSSILCVKG 595

Query: 1207 PKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSYN 1028
            P   L F N +QPLLME L ++GFS+SL+DF++PK +LEE+ +SIQE S ++ Q R S +
Sbjct: 596  PGGALQFLNALQPLLMEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKS 655

Query: 1027 ELVQLQVQNYLKNLKAPILDF-VQFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGKY 851
            + V+++V N LK++K  I DF V+ S +G LID KS+ +++KVV+Q+GF+ LQL+ +GK+
Sbjct: 656  QFVEMRVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKF 715

Query: 850  YSRVLVEDCFVNYVTKHSTRMPEQ-PSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
            YS  LVEDCF ++V KH   +  Q P E+YGLV+NS+FHGL P+EELVH           
Sbjct: 716  YSSRLVEDCFSSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRS 775

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGLTEPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DDA D  +    GEPV
Sbjct: 776  SRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTPGEPV 835

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLD+SQSNN+SW  MKEIL  KV+Y+ND +DR+VIL+LNDC C K
Sbjct: 836  GVLAATAISNPAYKAVLDASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCPK 895

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+EKAA  V N LK+V+L++CA D  IEY  QI L  SS  T  LVGHIHL+K +L +
Sbjct: 896  KFCKEKAAIAVQNRLKRVTLEDCATDICIEYHKQI-LDGSSEATPALVGHIHLEKARLDM 954

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTKQ 2
            +N +T+ IL+KCQ+V   +GKKKG L H FK++T S  +C  T++
Sbjct: 955  INVSTEDILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQK 999


>gb|KQL28710.1| hypothetical protein SETIT_016066mg [Setaria italica]
          Length = 2050

 Score = 1178 bits (3048), Expect = 0.0
 Identities = 584/1012 (57%), Positives = 758/1012 (74%), Gaps = 20/1012 (1%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  +++L  +G++ SIK SL+T EEI TYSIN CP++HPSQLANPFLG+PLE+G+CE+
Sbjct: 1    MEEDQSAILFAEGAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCEA 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKST-- 2639
            CG  E   CEGHFG+IELP+P+YHP H+SELR +LS IC KCLR+KK K      K T  
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHISELRQLLSLICFKCLRIKKGKVNKQNGKETAS 120

Query: 2638 ---SCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTS-CR 2471
               SC YCRD+P +S++E KT+D AI LEL  P +  + E  WNFLD+YGFHYGG++  R
Sbjct: 121  ATLSCYYCRDIPALSLKETKTTDGAIRLELRAPPRKHMTERSWNFLDKYGFHYGGSAHSR 180

Query: 2470 PLLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSD 2291
             LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS D
Sbjct: 181  LLLPEEALNILKKVPDDTRRKLAARGYTVQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYD 240

Query: 2290 ISRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRF 2111
            IS  LLKKVL KI+ IKRSRSGSPNFESH  E+ ++Q  + QYI LRGTT+ P D  +RF
Sbjct: 241  ISIALLKKVLQKIEQIKRSRSGSPNFESHEEESCDIQLAVGQYIHLRGTTRGPQDNSKRF 300

Query: 2110 VLSHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
             +  ++  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIGVDV+GLPSE+AKRITFEE
Sbjct: 301  AVGTDTAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ +VDK  C+TY+DG  TYAI++GSKGHT+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQEVVDKGLCLTYRDGKDTYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C+   ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCSPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVEKQL+ SHSG++N+QL +DSL+A+K +S+ + L K +A QLAM    +LP P +I   
Sbjct: 481  SVEKQLISSHSGQVNLQLGNDSLVAMKAMSSRTMLSKELANQLAMFVPFSLPAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  P+ T  QI+Q  LP  L   G+ H  +    I+KLD  KD VQ    D+ S++   +
Sbjct: 538  KSIPAWTITQIVQGALPAKLTCQGKTH-LVRDGNIIKLDLDKDHVQDSFNDLVSSVLSEK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GP + L F N +QPLLME L ++GFS++LKDF++PK++LEE+ ++IQ+ S I+ Q R S 
Sbjct: 597  GPGEALQFLNVLQPLLMEFLLLDGFSVTLKDFNVPKAILEEVHKNIQKQSLILEQSRFSK 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            +++ +++V+N LK +K  I +FV + S +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQIAEMRVENNLKGVKQQISEFVIKCSDLGLLIDPKKEASMSKVVQQLGFVGLQLYHEGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YS  LVEDCF N+V KHS    E P E+YGLV++S+FHGL P+EELVH           
Sbjct: 717  LYSSRLVEDCFSNFVNKHSDIGDEHPPEAYGLVQSSYFHGLNPYEELVHSISTREAIVRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEYL-DDAVDSANIAPAGEPV 497
             RGLTEPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  D  +  P GEPV
Sbjct: 777  SRGLTEPGTLFKNLMAILRDVVICYDGTVRNTCSNSIIQLKYKEDDETDFPSALPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAISTPAY+AVLDSSQSNN+SWE MKEIL  KV Y+ND+ DR+VIL+LNDC C K
Sbjct: 837  GVLAATAISTPAYRAVLDSSQSNNASWESMKEILQTKVGYKNDMKDRKVILFLNDCSCPK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIE------------YKNQINLHNSSVVTSGLV 173
              C+E+AA TV +CL++V+L +CA D SIE            ++ QINL  +S     LV
Sbjct: 897  KFCKERAALTVQSCLRRVTLADCATDISIEGERQKYVVCIFRHQKQINLDETSEAAPTLV 956

Query: 172  GHIHLDKIQLKLLNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANEC 17
            GHIHLDK QL+ +N +T  IL+KC+++   YGKKKG L H FK++T S  +C
Sbjct: 957  GHIHLDKAQLERINISTQDILQKCEEISGRYGKKKGHLCHLFKKITFSTCDC 1008


>gb|AQK60576.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]
          Length = 1906

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000


>gb|AQK60584.1| DNA-directed RNA polymerase V subunit 1, partial [Zea mays]
          Length = 1436

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000


>gb|AQK60588.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]
          Length = 1914

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000


>gb|AQK60586.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]
          Length = 1949

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000


>gb|AQK60579.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]
          Length = 1465

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000


>gb|AQK60571.1| DNA-directed RNA polymerase V subunit 1 [Zea mays]
          Length = 1287

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 582/1004 (57%), Positives = 757/1004 (75%), Gaps = 8/1004 (0%)
 Frame = -3

Query: 2992 MDDKLTSVLVLDGSVSSIKFSLATSEEIKTYSINGCPISHPSQLANPFLGMPLESGRCES 2813
            M++  + +L+ +G++ SIK SL+T EEI TYSIN CP++HPSQL NPFLG+PLE+G+CES
Sbjct: 1    MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES 60

Query: 2812 CGTDEIGNCEGHFGHIELPIPVYHPSHVSELRDILSCICLKCLRMKKVKYGAAKDKS--- 2642
            CG  E   CEGHFG+IELP+P+YHP HV+ELR +LS ICLKCLR+KK K   +  K    
Sbjct: 61   CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA 120

Query: 2641 -TSCIYCRDLPPISIREVKTSDIAISLELAVPQKTRVGEAFWNFLDRYGFHYGGTSC-RP 2468
             T C YCRD+P +S++E+KT+D AI LEL  P    + E  WNFLD+YGFH+GG S  R 
Sbjct: 121  PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT 180

Query: 2467 LLPHEALNVLKQIPEESTKKLVGKGYFPQRGLIMEHLPVPPNCLCVPEISDGKCVMSSDI 2288
            LLP EALN+LK++P+++ +KL  +GY  Q G +M++LPVPPNCL +PE +DG+ +MS DI
Sbjct: 181  LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI 240

Query: 2287 SRPLLKKVLNKIDLIKRSRSGSPNFESHVIEANELQSCIAQYIRLRGTTKSPHDTKRRFV 2108
            S  LLKKVL KI+ IKRSRSGSPNFESH  E+ +LQ  I QYIRLRGTT+ P D  +RF 
Sbjct: 241  SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT 300

Query: 2107 L-SHESNELPTKQWLEKIRTLFIRKGSGFSSRCVITGDPYIGVDVLGLPSEIAKRITFEE 1931
            + S +S  L TKQWLEK+RTLFI KGSGFSSR V+TGDPYIG+ V+GLPSE+AKR+TFEE
Sbjct: 301  VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE 360

Query: 1930 RVTEHNICRLQNIVDKRQCITYKDGSYTYAISLGSKGHTSLKVGQIINRQIVNGDIVFIN 1751
            +VT+ NI RLQ++VDK  C+TY+DG  TYAI++GSKG+T+LKVGQ I+R+IV+GD+VF+N
Sbjct: 361  QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN 420

Query: 1750 RPPSTHKHSLQAFHVYIHDDHTVKINPLICAALGADFDGDCVHIFYPQSLSAKAEVVELF 1571
            RPPSTHKHSLQAF+ Y+HDDHTVKINPL+C    ADFDGDCVHI+YPQSL+AKAE +ELF
Sbjct: 421  RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF 480

Query: 1570 SVEKQLLCSHSGKLNMQLVHDSLLALKLISNGSFLKKTVAQQLAMHEVPALPLPTIIEAN 1391
            SVE+QL+ SHSGK+N+QL +DSL+A+K +S+ + L K +A QLAM    +L  P +I   
Sbjct: 481  SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVI--- 537

Query: 1390 KYGPSRTNLQILQNLLPGFLDISGEEHDSISQSEILKLDSSKDIVQLLLTDIPSAIHQMR 1211
            K  PS T  QI+Q   P  L   G+ H  +  S I++LD  K+ VQ    D+ S+I + +
Sbjct: 538  KPVPSWTISQIVQGAFPANLTCQGDTH-LVRDSTIIRLDLGKESVQDSFPDLVSSILREK 596

Query: 1210 GPKDVLNFFNYIQPLLMEMLFIEGFSISLKDFDIPKSVLEEIRRSIQEISCIMNQLRSSY 1031
            GPK+ L F N ++PLLME L ++G SISL+DF++PK++LEE ++ I+  S I+ Q R S 
Sbjct: 597  GPKEALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCST 656

Query: 1030 NELVQLQVQNYLKNLKAPILDFV-QFSAIGNLIDMKSDSAVAKVVEQIGFLSLQLFDQGK 854
            ++ V+ +V+N LKN+K  I D V +FS +G LID K +++++KVV+Q+GF+ LQL+ +GK
Sbjct: 657  SQFVEFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGK 716

Query: 853  YYSRVLVEDCFVNYVTKHSTRMPEQPSESYGLVRNSFFHGLAPFEELVHXXXXXXXXXXX 674
             YSR LVEDCF N+V KH     E P E+YGLV++S+FHGL P+EEL+H           
Sbjct: 717  LYSRRLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRS 776

Query: 673  XRGLTEPGTLFKNLMAILRDVVICYDGTVRNECTGSIVQFEY-LDDAVDSANIAPAGEPV 497
             RGL+EPGTLFKNLMAILRDVVICYDGTVRN C+ SI+Q +Y  DD  DS+++ P GEPV
Sbjct: 777  SRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPV 836

Query: 496  GVLAATAISTPAYKAVLDSSQSNNSSWELMKEILLCKVAYRNDVSDRRVILYLNDCYCRK 317
            GVLAATAIS PAYKAVLDSSQSNN+SWE MKEIL  + +Y+NDV DR+V+L+LNDC C K
Sbjct: 837  GVLAATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAK 896

Query: 316  TICREKAAYTVLNCLKKVSLKECACDFSIEYKNQINLHNSSVVTSGLVGHIHLDKIQLKL 137
              C+E+AA  V +CLK+V+L +CA D  IE++ QINL  +S     LVGHIHLDK  L+ 
Sbjct: 897  KFCKERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLER 956

Query: 136  LNQNTDTILRKCQDVIFSYGKKKGQLSHFFKRLTLSANECFSTK 5
            +N +T  IL+KCQ+V   +GKKKG L H FK++T +  +C  T+
Sbjct: 957  INISTQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQ 1000