BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00010403
         (1440 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   647   0.0  
ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chl...   586   0.0  
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   587   0.0  
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   583   0.0  
ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic ...   575   0.0  
ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-...   536   0.0  
gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]               535   0.0  
ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synth...   532   0.0  
ref|XP_002439034.1| RNA pseudouridine synthase 2, chloroplastic ...   527   0.0  
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   521   e-180
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   520   e-179
ref|XP_015642503.1| PREDICTED: RNA pseudouridine synthase 2, chl...   517   e-179
ref|XP_004966473.1| RNA pseudouridine synthase 2, chloroplastic ...   515   e-178
ref|XP_010239676.1| PREDICTED: RNA pseudouridine synthase 2, chl...   513   e-177
gb|PAN22326.1| hypothetical protein PAHAL_D00167 [Panicum hallii...   511   e-176
gb|OEL32058.1| RNA pseudouridine synthase 2, chloroplastic [Dich...   511   e-176
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   510   e-176
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   510   e-176
gb|ACG41877.1| RNA binding protein [Zea mays]                         509   e-176
ref|XP_020180196.1| RNA pseudouridine synthase 2, chloroplastic ...   509   e-176

>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis]
 ref|XP_009382728.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis]
          Length = 440

 Score =  647 bits (1668), Expect = 0.0
 Identities = 323/422 (76%), Positives = 364/422 (86%), Gaps = 3/422 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSRFSSKPLCCRSSYFGPSLEA---PPQGEIRANHAGLRLEETVEVGAEKTRI 1122
            LL RNP  SR   + L C SSY  P L+    PP+GEIR NHAG+RLEE VEVGAEKTRI
Sbjct: 22   LLRRNPNRSRVPPRALQC-SSY--PDLDPESPPPRGEIRVNHAGVRLEERVEVGAEKTRI 78

Query: 1121 DSWISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPE 942
            DSWISSRI GVSRARIQSSIRSGLV+VNGRT++KVSHI+KGGD++SCM+SKL PL+AEPE
Sbjct: 79   DSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGDMVSCMISKLLPLKAEPE 138

Query: 941  DIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXX 762
            D+PLDIV+EDEHV+VVNKPAHMVVHPAPGN NGTLVNAILHHCRLP  AF    Q     
Sbjct: 139  DMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPIRAFANNIQISDTE 198

Query: 761  XXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHL 582
                       ++CADQ S+EE+G++N +AL+RPGIVHRLDKGTSGLLVVAKDDHSH+HL
Sbjct: 199  ECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKGTSGLLVVAKDDHSHAHL 258

Query: 581  AEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAAS 402
            AEQFK+HTIHRVY+SLTSGVPNPS GRIE+PIARDSNNRIRMVAVSGL+ +SRHARYAAS
Sbjct: 259  AEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMVAVSGLN-NSRHARYAAS 317

Query: 401  RYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRI 222
            RYKVI++F+ GGAALVQWRLETGRTHQIRAHAKYLG+PLLGDEVYGGTK MALSLLRPR 
Sbjct: 318  RYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRT 377

Query: 221  PSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSL 42
            P TYH HLSN++SKLQRP LHA S+GFKHPHTG+FLQFSCPPPDDF++VL+QLR +S   
Sbjct: 378  PPTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCPPPDDFSKVLDQLRSISDCC 437

Query: 41   AK 36
            AK
Sbjct: 438  AK 439


>ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Musa acuminata subsp. malaccensis]
          Length = 403

 Score =  586 bits (1511), Expect = 0.0
 Identities = 296/386 (76%), Positives = 332/386 (86%), Gaps = 3/386 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSRFSSKPLCCRSSYFGPSLEA---PPQGEIRANHAGLRLEETVEVGAEKTRI 1122
            LL RNP  SR   + L C SSY  P L+    PP+GEIR NHAG+RLEE VEVGAEKTRI
Sbjct: 22   LLRRNPNRSRVPPRALQC-SSY--PDLDPESPPPRGEIRVNHAGVRLEERVEVGAEKTRI 78

Query: 1121 DSWISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPE 942
            DSWISSRI GVSRARIQSSIRSGLV+VNGRT++KVSHI+KGGD++SCM+SKL PL+AEPE
Sbjct: 79   DSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGDMVSCMISKLLPLKAEPE 138

Query: 941  DIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXX 762
            D+PLDIV+EDEHV+VVNKPAHMVVHPAPGN NGTLVNAILHHCRLP  AF    Q     
Sbjct: 139  DMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPIRAFANNIQISDTE 198

Query: 761  XXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHL 582
                       ++CADQ S+EE+G++N +AL+RPGIVHRLDKGTSGLLVVAKDDHSH+HL
Sbjct: 199  ECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKGTSGLLVVAKDDHSHAHL 258

Query: 581  AEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAAS 402
            AEQFK+HTIHRVY+SLTSGVPNPS GRIE+PIARDSNNRIRMVAVSGL+ +SRHARYAAS
Sbjct: 259  AEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMVAVSGLN-NSRHARYAAS 317

Query: 401  RYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRI 222
            RYKVI++F+ GGAALVQWRLETGRTHQIRAHAKYLG+PLLGDEVYGGTK MALSLLRPR 
Sbjct: 318  RYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRT 377

Query: 221  PSTYHTHLSNVVSKLQRPSLHALSLG 144
            P TYH HLSN++SKLQRP LHA S+G
Sbjct: 378  PPTYHGHLSNIISKLQRPCLHAFSIG 403


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  587 bits (1513), Expect = 0.0
 Identities = 297/403 (73%), Positives = 334/403 (82%), Gaps = 4/403 (0%)
 Frame = -2

Query: 1256 SKPLCCRSSYFGPSLEAPP----QGEIRANHAGLRLEETVEVGAEKTRIDSWISSRIHGV 1089
            SK LC  +S         P    Q  I  NHAGLRLEE VE+GAEKTR+DSWISSRI  V
Sbjct: 43   SKALCSSTSTSSRDSNPEPFQRQQRVITGNHAGLRLEERVEIGAEKTRLDSWISSRIETV 102

Query: 1088 SRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDE 909
            SRARIQSSIRSGLV+VNGRT+DKVSHI+KGGD++SC VS+LQPLRAE EDIPLDIV+ED 
Sbjct: 103  SRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAEAEDIPLDIVYEDA 162

Query: 908  HVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXX 729
            HVLVVNKPAHMVVHPAPGN NGTLVNAILHHCRLPT+A V +++                
Sbjct: 163  HVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPTIACVNKSKISESEDCSESSDSEMD 222

Query: 728  DLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHR 549
            +   DQ S+E I  +N +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+HLAEQFK HTIHR
Sbjct: 223  NYYFDQSSVEGISSENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHR 282

Query: 548  VYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDG 369
            VYISLT GVPNPSSGRIE+PIARDSNNRIRM AV G S +SRHARYAASRYKVI+    G
Sbjct: 283  VYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVLGTS-NSRHARYAASRYKVIELLGRG 341

Query: 368  GAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNV 189
            G+ALV+WRLETGRTHQIRAHAKY+G+PLLGDEVYGGTKSMALSLLRPR  S++H HLS +
Sbjct: 342  GSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQI 401

Query: 188  VSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLR 60
            +SKLQRP LHA SLGFKHPHTG++L+FSCPPPDDFAEVL+QL+
Sbjct: 402  LSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQ 444


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  583 bits (1504), Expect = 0.0
 Identities = 297/415 (71%), Positives = 339/415 (81%)
 Frame = -2

Query: 1295 KLLCRNPIGSRFSSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDS 1116
            K LC +P  S   S P         PS + P Q  +R NHAGLRLEE+VE+GAEKTR+DS
Sbjct: 33   KALCSSPTTSSRDSNP--------EPSPQRP-QRVLRGNHAGLRLEESVEIGAEKTRLDS 83

Query: 1115 WISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDI 936
            WISSRI GVSRARIQSSIRSG V VNGRT+DKVSHI+KGGD++SC VS+LQPLRA+ EDI
Sbjct: 84   WISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAKAEDI 143

Query: 935  PLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXX 756
            PLDIV+ED +VLVVNKPAHMVVHPAPGN NGTLV+AILHHCRLPT+A V  ++       
Sbjct: 144  PLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHCRLPTIACVSNSKNSESEEC 203

Query: 755  XXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAE 576
                     +   DQ S+E +  +N +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+HLAE
Sbjct: 204  SESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAE 263

Query: 575  QFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRY 396
            QFK HTIHRVYISLT GVPNPSSGRIE+PIARDSNNRIRM AVSG S +SRHARYAASRY
Sbjct: 264  QFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVSGTS-NSRHARYAASRY 322

Query: 395  KVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPS 216
            KVI     GG++LV+WRLETGRTHQIRAHAKYLG+PLLGDEVYGGTKSMALSLLRPR  S
Sbjct: 323  KVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTSS 382

Query: 215  TYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLS 51
            ++H HLS ++SK+QRP LHA  LGFKHPHTG+ L+FSCPPPDDFAEVL+QL+ +S
Sbjct: 383  SHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQSIS 437


>ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic isoform X1 [Ananas
            comosus]
 gb|OAY68405.1| RNA pseudouridine synthase 2, chloroplastic [Ananas comosus]
          Length = 430

 Score =  575 bits (1481), Expect = 0.0
 Identities = 288/416 (69%), Positives = 342/416 (82%)
 Frame = -2

Query: 1289 LCRNPIGSRFSSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDSWI 1110
            L RNP   R+      C SS   P  +  P   +R++HAG RLEE VEVG+ ++R+D+W+
Sbjct: 18   LRRNP---RYRVLRAMCSSSALDP--DPNPSPRLRSSHAGARLEEAVEVGSGRSRLDAWL 72

Query: 1109 SSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPL 930
            +SRI GVSRARIQSSIRSGLV+VNGRT+DKVSH+VKGGD+ISC VS+LQPLRAE EDIPL
Sbjct: 73   ASRIRGVSRARIQSSIRSGLVAVNGRTVDKVSHMVKGGDMISCTVSELQPLRAEAEDIPL 132

Query: 929  DIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXX 750
            DIV+EDEHVLVVNKPAHMVVHPAPGN NGTLVNAILHHCRLP +  V  +          
Sbjct: 133  DIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPMVTCVNDSTMSESDESLD 192

Query: 749  XXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQF 570
                      ADQ+S EE+ ++  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+HLAEQF
Sbjct: 193  SSDEEIDVYHADQFSTEELSLEVPEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQF 252

Query: 569  KQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKV 390
            KQHTI+RVYISLT+GVPNP S RIE+PIARD NNR+RMVA+SG   + RHARYAASRY+V
Sbjct: 253  KQHTINRVYISLTTGVPNPYSARIEIPIARDPNNRVRMVAISG--SNHRHARYAASRYEV 310

Query: 389  IDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTY 210
            I+    GG+ALV+WRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLL+PR PS++
Sbjct: 311  IEVLAGGGSALVKWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLKPRTPSSH 370

Query: 209  HTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSL 42
            H HLS+++SKL RP LHALSLGF+HP TG+FL+FSCPPPDDF+EV++QLR +++S+
Sbjct: 371  HGHLSHMISKLDRPCLHALSLGFEHPQTGEFLRFSCPPPDDFSEVVDQLRGINTSV 426


>ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-like isoform X1
            [Dendrobium catenatum]
          Length = 437

 Score =  536 bits (1381), Expect = 0.0
 Identities = 268/408 (65%), Positives = 321/408 (78%)
 Frame = -2

Query: 1256 SKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDSWISSRIHGVSRAR 1077
            SK L   S   G S E PP+  +R+N+ G+RL ETVE+G E+TR+DSWISSRI G+SRAR
Sbjct: 28   SKVLLSASPSCGSSPERPPEA-VRSNYTGIRLAETVELGFERTRVDSWISSRIPGISRAR 86

Query: 1076 IQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDEHVLV 897
            +QSSIR+GLV+VNGR IDKVSHI+KGGD +SC+V +L+PL+AEPE+IPL+IV+EDEHVLV
Sbjct: 87   VQSSIRTGLVTVNGRIIDKVSHILKGGDKVSCVVCELEPLKAEPEEIPLNIVYEDEHVLV 146

Query: 896  VNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXXDLCA 717
            VNKPAHMVVHPAPGN NGTLVNAIL+HC+LP  A + R                      
Sbjct: 147  VNKPAHMVVHPAPGNANGTLVNAILNHCQLPAGACINRKGSSETDNTDSSENEVGDFYVG 206

Query: 716  DQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYIS 537
              Y  EE+   + D L+RPGIVHRLDKGTSGLLVVAKD+HSH+HLA+QFK HTIHR Y+S
Sbjct: 207  HSY--EELKTSSSDELVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAKQFKLHTIHRQYVS 264

Query: 536  LTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDGGAAL 357
            L SGVP+PSSGRI +PI RD NNR RM  VSG++ SSR+AR A+SRYKV++ F  GG+AL
Sbjct: 265  LVSGVPSPSSGRIAIPIVRDCNNRTRMATVSGIN-SSRNARNASSRYKVVEVFAAGGSAL 323

Query: 356  VQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNVVSKL 177
            VQWRLETGRTHQIR HAKYLG+PLLGDE+YGGTK +ALSLL+ R P + H  +S++VSKL
Sbjct: 324  VQWRLETGRTHQIRTHAKYLGIPLLGDELYGGTKGLALSLLKSRTPMSCHALVSDMVSKL 383

Query: 176  QRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSLAKN 33
            QRP LHA SLGFKHPHTG+ L FSCPPPDDF E+L QLR +S   ++N
Sbjct: 384  QRPCLHAQSLGFKHPHTGEHLHFSCPPPDDFTEILHQLRTISDHKSQN 431


>gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]
          Length = 458

 Score =  535 bits (1379), Expect = 0.0
 Identities = 272/415 (65%), Positives = 320/415 (77%), Gaps = 4/415 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSR-FSSKPLCCRSSYFGPSLEAPPQGEI---RANHAGLRLEETVEVGAEKTR 1125
            LL RNP  SR FS       SS  G S+       +   R+N+AG+ LEETV  G EK+R
Sbjct: 27   LLHRNPRTSRVFSIIRYSALSSSTGESISDQSCEHLVGQRSNYAGVTLEETVTNGTEKSR 86

Query: 1124 IDSWISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEP 945
            +DSW+S RI G+SRAR+QSSI+SGLVSVNGR I+KVSH+++ GD ++C +S+LQPLRAEP
Sbjct: 87   LDSWVSIRISGISRARVQSSIKSGLVSVNGRIINKVSHVIRAGDKVNCTISELQPLRAEP 146

Query: 944  EDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXX 765
            EDIPLDIV+ED HVLVVNKPA+MVVHPAPGNPNGTLVN ILHHCRLP    V        
Sbjct: 147  EDIPLDIVYEDAHVLVVNKPANMVVHPAPGNPNGTLVNGILHHCRLP---IVSSPNSEML 203

Query: 764  XXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 585
                           +DQ   EE+   +C AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ 
Sbjct: 204  SETGDISDEEFESFSSDQSYSEEVSSSSCAALVRPGIVHRLDKGTSGLLVVAKDEHSHAQ 263

Query: 584  LAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAA 405
            L+EQFKQHTIHRVY+SLTSGVP+P+SGRIE+PI RD NNR+RM AVSG   +SR +RYAA
Sbjct: 264  LSEQFKQHTIHRVYVSLTSGVPSPTSGRIEIPIGRDVNNRLRMTAVSG-PNNSRQSRYAA 322

Query: 404  SRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPR 225
            SRY+VI+   DGG+ALV+WRLETGRTHQIRAHAKYLG+PLLGDEVYGGTK MALSLLRP+
Sbjct: 323  SRYRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALSLLRPK 382

Query: 224  IPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLR 60
             PS  H HLS +V+KL+RP LHA +LGFKHPHTG+ + FSCPPP DF E+L  LR
Sbjct: 383  TPSNNHGHLSELVNKLERPCLHAFTLGFKHPHTGEVVNFSCPPPADFTEILSLLR 437


>ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic
            [Asparagus officinalis]
          Length = 434

 Score =  532 bits (1370), Expect = 0.0
 Identities = 282/421 (66%), Positives = 316/421 (75%)
 Frame = -2

Query: 1295 KLLCRNPIGSRFSSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDS 1116
            KLL RNP   R+  +  C  +S         PQ  +RANHAG+R E  V+VG+ K RIDS
Sbjct: 18   KLLRRNP-NPRYP-RVHCSSTSTLNSGPNPNPQ-PVRANHAGVRFEGIVDVGSAKARIDS 74

Query: 1115 WISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDI 936
            WI+S                GLV+VNGRT+ KVSH +K GD +SC VS+LQPLRAEPEDI
Sbjct: 75   WIASXXXXXXXXAX------GLVAVNGRTVQKVSHRIKEGDKVSCTVSELQPLRAEPEDI 128

Query: 935  PLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXX 756
            PLDIVFED HVLVVNKPAHMVVHPAPGN NGTLVNA+L+HCRLPT A     +       
Sbjct: 129  PLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCRLPTAACTDNKRCIESEEC 188

Query: 755  XXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAE 576
                     D   DQ SIEE   DN DAL+RPGIVHRLDKGTSGLLV+AKD+HSHSHLAE
Sbjct: 189  IDSSDNEIEDFPIDQ-SIEEFSSDNNDALVRPGIVHRLDKGTSGLLVIAKDEHSHSHLAE 247

Query: 575  QFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRY 396
            QFK H IHRVYISLTSGVP P SGRIEVPIARDS+NRIRM AV GL K+S+HARYAASRY
Sbjct: 248  QFKNHIIHRVYISLTSGVPRPDSGRIEVPIARDSSNRIRMAAVPGL-KNSKHARYAASRY 306

Query: 395  KVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPS 216
            KV++ F  GG+ALV+WRLETGRTHQIRAHAKYLGVPLLGDE+YGGTK MALSLL+PRIPS
Sbjct: 307  KVVEVFAGGGSALVRWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMALSLLKPRIPS 366

Query: 215  TYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSLAK 36
              H HLS +VS+LQRP LHALSLGF HPHTG +L+FSCPPPDDF+EVL  LR  S    +
Sbjct: 367  NSHGHLSCMVSRLQRPCLHALSLGFTHPHTGVYLRFSCPPPDDFSEVLSLLRSFSQQTGE 426

Query: 35   N 33
            N
Sbjct: 427  N 427


>ref|XP_002439034.1| RNA pseudouridine synthase 2, chloroplastic [Sorghum bicolor]
 gb|EER90401.1| hypothetical protein SORBI_3010G268100 [Sorghum bicolor]
          Length = 441

 Score =  527 bits (1357), Expect = 0.0
 Identities = 268/414 (64%), Positives = 324/414 (78%), Gaps = 3/414 (0%)
 Frame = -2

Query: 1265 RFSSKPLCCRSSYFGPSLEAPPQGEIR-ANHAGLRLEETVEVGAEKTRIDSWISSRIHG- 1092
            R S + +  R      S EA    E R   H G+RLEE V VG  ++RID+WIS+R+ G 
Sbjct: 27   RSSPRAIYARCVSSNASAEAAEPAESRKGGHGGMRLEEAVPVGEGRSRIDAWISARLGGG 86

Query: 1091 -VSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFE 915
             VSRAR+Q+SIR+GLV+VNGR + KVSH VKGGD++SC VS+LQPLRAE EDIPLDIV+E
Sbjct: 87   GVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYE 146

Query: 914  DEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXX 735
            D+HVLVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T   + R+               
Sbjct: 147  DDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARSSTGDECLDSSDDDID 206

Query: 734  XXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTI 555
              ++  DQ++ E+   +  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI
Sbjct: 207  VFNV--DQFATEDASSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTI 264

Query: 554  HRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKVIDNFV 375
             RVYISLT GVPNP+SGRIE  IARD NNRIRM+A++G     R+AR+AASRYKV + FV
Sbjct: 265  RRVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAIAG--SGHRYARHAASRYKVREVFV 322

Query: 374  DGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLS 195
             GG+ALV+WRLETGRTHQIRAHAKY+G+PLLGDE YGGTKSMALSLLRPR PS YH+ LS
Sbjct: 323  GGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPRTPSKYHSDLS 382

Query: 194  NVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSLAKN 33
            N++SK+ RP LHA  LGFKHPH+G+ L+FSCPPPDDF+EVL++LR ++SS A+N
Sbjct: 383  NLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRKVTSSDAQN 436


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Oryza
            brachyantha]
          Length = 442

 Score =  521 bits (1342), Expect = e-180
 Identities = 268/424 (63%), Positives = 319/424 (75%), Gaps = 4/424 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSRF--SSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRID 1119
            LL R   G+RF  +S+  C  S        A      R  H G RLEE V  G  ++RID
Sbjct: 19   LLRRRKNGARFLRASQARCISSD-----ANAEAASSRRGGHGGTRLEEAVPAGEGRSRID 73

Query: 1118 SWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEP 945
            +WISSR+ G  VSRAR+Q+SIR+GLV+VNGR + KVSH+VKGGD++SC VS+LQPLRAEP
Sbjct: 74   AWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDMVSCTVSELQPLRAEP 133

Query: 944  EDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXX 765
            EDIPLDIV+ED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T   + RN     
Sbjct: 134  EDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSTDDE 193

Query: 764  XXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 585
                         +  DQ++  E+  +  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ 
Sbjct: 194  CPDSSDDDIDVFHV--DQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQ 251

Query: 584  LAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAA 405
            LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD NNRIRM+A  G     R+AR+AA
Sbjct: 252  LAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG--SGHRYARHAA 309

Query: 404  SRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPR 225
            SRYKV + F  GG+ALV+W+LETGRTHQIRAHAKYLG+PLLGDE YGGTKSMALSLLRPR
Sbjct: 310  SRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPR 369

Query: 224  IPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSS 45
              S YH  LSN+++K+ RP LHA  LGFKHPH+G+ L+FSCPPPDDF EVL +LR ++ S
Sbjct: 370  TSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRRVTPS 429

Query: 44   LAKN 33
              +N
Sbjct: 430  DGQN 433


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  520 bits (1338), Expect = e-179
 Identities = 259/377 (68%), Positives = 301/377 (79%), Gaps = 2/377 (0%)
 Frame = -2

Query: 1187 RANHAGLRLEETVEVGAEKTRIDSWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVS 1014
            R  H G RLEE V  G  ++RID+WIS+R+ G  VSRARIQ+SIR+GLV VNGR + KVS
Sbjct: 53   RGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVS 112

Query: 1013 HIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLV 834
            H+VKGGD++SC VS+LQPLRAEPEDIPLDIV+ED+H+LVVNKPAHMVVHPAPGN NGTLV
Sbjct: 113  HMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLV 172

Query: 833  NAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGI 654
            NAILHHC++ T   + RN                 D+  DQ++  E+  +  +AL+RPGI
Sbjct: 173  NAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDI--DQFTTGEVSSEVREALVRPGI 230

Query: 653  VHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDS 474
            VHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD 
Sbjct: 231  VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290

Query: 473  NNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLG 294
            NNRIRM+A  G     R+AR+AASRYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG
Sbjct: 291  NNRIRMIATPG--SGHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLG 348

Query: 293  VPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFL 114
            +PLLGDE YGGTKSMALSLLRPR PS YH  LSN++SK+ RP LHA  LGFKHPH+G+ L
Sbjct: 349  IPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKIL 408

Query: 113  QFSCPPPDDFAEVLEQL 63
            +FSCPPPDDF EVL +L
Sbjct: 409  EFSCPPPDDFTEVLNEL 425


>ref|XP_015642503.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Oryza sativa
            Japonica Group]
 sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
 dbj|BAD53590.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
            Japonica Group]
 dbj|BAD61720.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
            Japonica Group]
 dbj|BAF20508.1| Os06g0717400 [Oryza sativa Japonica Group]
 dbj|BAG93191.1| unnamed protein product [Oryza sativa Japonica Group]
 gb|EEE66368.1| hypothetical protein OsJ_22675 [Oryza sativa Japonica Group]
 dbj|BAS99517.1| Os06g0717400 [Oryza sativa Japonica Group]
          Length = 445

 Score =  517 bits (1332), Expect = e-179
 Identities = 258/377 (68%), Positives = 300/377 (79%), Gaps = 2/377 (0%)
 Frame = -2

Query: 1187 RANHAGLRLEETVEVGAEKTRIDSWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVS 1014
            R  H G RLEE V  G  ++RID+WIS+R+ G  VSRARIQ+SIR+GLV VNGR + KVS
Sbjct: 53   RGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVS 112

Query: 1013 HIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLV 834
            H+VKGGD++SC V +LQPLRAEPEDIPLDIV+ED+H+LVVNKPAHMVVHPAPGN NGTLV
Sbjct: 113  HMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLV 172

Query: 833  NAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGI 654
            NAILHHC++ T   + RN                 D+  DQ++  E+  +  +AL+RPGI
Sbjct: 173  NAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDI--DQFTTGEVSSEVREALVRPGI 230

Query: 653  VHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDS 474
            VHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD 
Sbjct: 231  VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290

Query: 473  NNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLG 294
            NNRIRM+A  G     R+AR+AASRYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG
Sbjct: 291  NNRIRMIATPG--SGHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLG 348

Query: 293  VPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFL 114
            +PLLGDE YGGTKSMALSLLRPR PS YH  LSN++SK+ RP LHA  LGFKHPH+G+ L
Sbjct: 349  IPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKIL 408

Query: 113  QFSCPPPDDFAEVLEQL 63
            +FSCPPPDDF EVL +L
Sbjct: 409  EFSCPPPDDFTEVLNEL 425


>ref|XP_004966473.1| RNA pseudouridine synthase 2, chloroplastic [Setaria italica]
 gb|KQL12250.1| hypothetical protein SETIT_007819mg [Setaria italica]
          Length = 437

 Score =  515 bits (1326), Expect = e-178
 Identities = 256/382 (67%), Positives = 310/382 (81%), Gaps = 2/382 (0%)
 Frame = -2

Query: 1172 GLRLEETVEVGAEKTRIDSWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVSHIVKG 999
            G RLEE V  G  ++R+D+WIS+R+ G  VSRAR+Q+SIR+GLV+VNGR + KVSH+VKG
Sbjct: 54   GTRLEEAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKG 113

Query: 998  GDVISCMVSKLQPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILH 819
            GD++SC VS+LQPLRAE EDIPLDIV+ED+HVLVVNKPAHMVVHPAPGN NGTLVNAILH
Sbjct: 114  GDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILH 173

Query: 818  HCRLPTMAFVKRNQXXXXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLD 639
            HCR+ T   + RN                 D+  DQ++ E++  +  +AL+RPGIVHRLD
Sbjct: 174  HCRISTFTCLARNSTGDECPDSSDDDVDVFDV--DQFTTEDVSSEVRNALVRPGIVHRLD 231

Query: 638  KGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIR 459
            KGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT GVP+P+SGRIE  IARD NNRIR
Sbjct: 232  KGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIR 291

Query: 458  MVAVSGLSKSSRHARYAASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLG 279
            M+A++G     R+AR+AASRYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG+PLLG
Sbjct: 292  MIAIAG--SGQRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 349

Query: 278  DEVYGGTKSMALSLLRPRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCP 99
            DE YGGTKSMALSLLRPR PS YH+ LS+++SK+ RP LHA  LGFKHPH+G+ L+FSCP
Sbjct: 350  DETYGGTKSMALSLLRPRTPSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCP 409

Query: 98   PPDDFAEVLEQLRFLSSSLAKN 33
            PPDDF EVL++LR ++S+  +N
Sbjct: 410  PPDDFTEVLDELRRVTSADGQN 431


>ref|XP_010239676.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Brachypodium
            distachyon]
 ref|XP_010239679.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Brachypodium
            distachyon]
 gb|KQK16715.1| hypothetical protein BRADI_1g30180v3 [Brachypodium distachyon]
 gb|KQK16716.1| hypothetical protein BRADI_1g30180v3 [Brachypodium distachyon]
 gb|KQK16717.1| hypothetical protein BRADI_1g30180v3 [Brachypodium distachyon]
          Length = 439

 Score =  513 bits (1322), Expect = e-177
 Identities = 261/402 (64%), Positives = 312/402 (77%), Gaps = 2/402 (0%)
 Frame = -2

Query: 1259 SSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDSWISSRIHG--VS 1086
            +S+P C  +     ++EA P    R  HAG RLEE V  G  ++R+D+WIS+R+ G  VS
Sbjct: 28   ASRPRCLSAD---ANVEALPAPSRRGGHAGTRLEEAVPAGEGRSRVDAWISARLGGGGVS 84

Query: 1085 RARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDEH 906
            RAR+Q+SIR+GLV+VNGR + KVS  VKGGD +SC VS+LQPLRAE EDIPLDIV+EDEH
Sbjct: 85   RARVQASIRAGLVAVNGRPVSKVSQTVKGGDTVSCTVSELQPLRAEAEDIPLDIVYEDEH 144

Query: 905  VLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXXD 726
            +LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T   + RN                 D
Sbjct: 145  LLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPESSDDDIDVFD 204

Query: 725  LCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRV 546
            +  DQ++  E+  +  DA++RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI R+
Sbjct: 205  V--DQFN-GEVSSEVRDAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRI 261

Query: 545  YISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDGG 366
            YISLT GVPNP+S RIEVPI+RD NNRIRM+A  G     R+AR+AASRYKV + F  GG
Sbjct: 262  YISLTCGVPNPNSARIEVPISRDPNNRIRMIAAPG--SGHRYARHAASRYKVREVFCSGG 319

Query: 365  AALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNVV 186
            +ALV+W+LETGRTHQIRAHAKYLG PLLGDE YGG+KSMALSLLRPR PS YH  LSN++
Sbjct: 320  SALVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPRTPSRYHGDLSNLI 379

Query: 185  SKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLR 60
            SK+ RP LHA  LGFKHPH+G+ L+FSCPPPDDFAEVL++LR
Sbjct: 380  SKIDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDELR 421


>gb|PAN22326.1| hypothetical protein PAHAL_D00167 [Panicum hallii]
 gb|PAN22327.1| hypothetical protein PAHAL_D00167 [Panicum hallii]
          Length = 432

 Score =  511 bits (1316), Expect = e-176
 Identities = 257/377 (68%), Positives = 304/377 (80%), Gaps = 2/377 (0%)
 Frame = -2

Query: 1172 GLRLEETVEVGAEKTRIDSWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVSHIVKG 999
            G RLEE V  G  ++RID+WIS+R+ G  VSRAR+Q+SIR+GLV+VNGR + KVSH+VKG
Sbjct: 58   GTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKG 117

Query: 998  GDVISCMVSKLQPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILH 819
            GD++SC VS+LQPLRAE EDIPLDI +ED+HVLVVNKPAHMVVHPAPGN NGTLVNAILH
Sbjct: 118  GDLVSCTVSELQPLRAEAEDIPLDIAYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILH 177

Query: 818  HCRLPTMAFVKRNQXXXXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLD 639
            HCR+ T   + RN                 D+  DQ++ E++  +  DAL+RPGIVHRLD
Sbjct: 178  HCRISTFTCLARNSSGDECPDSSDDDIDVFDV--DQFATEDVSSEVRDALVRPGIVHRLD 235

Query: 638  KGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIR 459
            KGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT GVP+P+SGRIE  IARD NNRIR
Sbjct: 236  KGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIR 295

Query: 458  MVAVSGLSKSSRHARYAASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLG 279
            MVA++G     R+AR AASRYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG+PLLG
Sbjct: 296  MVAIAG--SGHRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 353

Query: 278  DEVYGGTKSMALSLLRPRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCP 99
            DE YGGTKSMALSLLRPR PS YH+ LS+++SK+ RP LHA  LGFKHPH+G+ L+FSCP
Sbjct: 354  DETYGGTKSMALSLLRPRTPSKYHSALSDLISKVDRPCLHAALLGFKHPHSGKILEFSCP 413

Query: 98   PPDDFAEVLEQLRFLSS 48
            PPDDF EVL +LR ++S
Sbjct: 414  PPDDFTEVLGELRRVTS 430


>gb|OEL32058.1| RNA pseudouridine synthase 2, chloroplastic [Dichanthelium
            oligosanthes]
          Length = 441

 Score =  511 bits (1316), Expect = e-176
 Identities = 264/423 (62%), Positives = 322/423 (76%), Gaps = 3/423 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSRFSSKPLCCRSSYFGPSLEAPPQGEIRANH-AGLRLEETVEVGAEKTRIDS 1116
            LL R  + S +  +P   R +      EA  + E R+    G RLEE V  G  ++R+D+
Sbjct: 19   LLHRQAVRS-YRLRPFYARCASSNARAEAAGEPESRSGGLGGTRLEEAVPAGEGRSRVDA 77

Query: 1115 WISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPE 942
            WIS+R+ G  VSRAR+Q+SIR+GLV+VNGR + KVSH+VKGGD++SC VS+LQPLRAE E
Sbjct: 78   WISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDLVSCTVSELQPLRAEAE 137

Query: 941  DIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXX 762
            DIPLDIV+ED+HVLVVNKPAHMVVHPAPGN NGTLVNAILHHCR+ T   + RN      
Sbjct: 138  DIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRISTFTCLARNSTGDEC 197

Query: 761  XXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHL 582
                       D+  DQ++ E++  +  DAL+RPGIVHRLDKGTSGLLVVAKD+HSH+ L
Sbjct: 198  LEFSDDDIDVFDV--DQFTTEDVSSEVRDALVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 255

Query: 581  AEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAAS 402
            AEQFKQHTI RVYISLT G+P+P+SGRIE  IARD NNRIRM+A++G     R+AR+AAS
Sbjct: 256  AEQFKQHTIRRVYISLTCGIPHPNSGRIEASIARDPNNRIRMIAIAG--SGHRYARHAAS 313

Query: 401  RYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRI 222
            RYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG+PLLGDE YGGTKSMALSLLR R 
Sbjct: 314  RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRTRS 373

Query: 221  PSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSL 42
            PS Y   LS+++SK+ RP LHA  LGFKHPH+G+ L+FSCPPPDDF  VL++LR ++S  
Sbjct: 374  PSKYLCGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTRVLDELRRVTSGD 433

Query: 41   AKN 33
             +N
Sbjct: 434  GQN 436


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  510 bits (1313), Expect = e-176
 Identities = 267/417 (64%), Positives = 317/417 (76%), Gaps = 6/417 (1%)
 Frame = -2

Query: 1292 LLCRNPIGS--RFSSKPLCCRSSYFGPSLE----APPQGEIRANHAGLRLEETVEVGAEK 1131
            LL R+P  S  RF  + L C  S  G S      + PQ   R N AG+ LE+TVE+ + K
Sbjct: 23   LLHRSPRASTSRFF-RVLNCSFSSTGESASDYQSSEPQNR-RGNFAGVCLEDTVEISSVK 80

Query: 1130 TRIDSWISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRA 951
            +RIDSWISSRI G+SRAR+QSSI+SGLVSVNGR IDKVSH+++ GD ++C + +LQPLRA
Sbjct: 81   SRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRA 140

Query: 950  EPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXX 771
            EPEDIPLDIV+EDE VLVVNKPAHMVVHPAPGN NGTLVN ILHHC LP +A        
Sbjct: 141  EPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSK--- 197

Query: 770  XXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSH 591
                             + Q S+EE+  + C+  +RPGIVHRLDKGTSGLLVVAKD+HSH
Sbjct: 198  VLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSH 257

Query: 590  SHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARY 411
            +HL+EQFK HTI+R+Y+SLT GVP+ +SGRIEVPI RD +NRIRM AV     SSR AR+
Sbjct: 258  AHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPS-PNSSRQARH 316

Query: 410  AASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLR 231
            AASRY+V++    GG+ALV+WRLETGRTHQIRAHAKYLG+PLLGDEVYGGT++MALSLLR
Sbjct: 317  AASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLR 376

Query: 230  PRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLR 60
             R  S++H  LS +VSKLQRP LHA +LGFKHPHTG+ +QFSCPPP DF EVL QLR
Sbjct: 377  TRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLR 433


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  510 bits (1314), Expect = e-176
 Identities = 270/426 (63%), Positives = 321/426 (75%), Gaps = 6/426 (1%)
 Frame = -2

Query: 1292 LLCRNPIGS--RFSSKPLCCRSSYFGPSLE----APPQGEIRANHAGLRLEETVEVGAEK 1131
            LL R+P  S  RF  + L C  S  G S      + PQ   R N AG+ LE+TVE+ + K
Sbjct: 23   LLHRSPRASTSRFF-RVLNCSFSSTGESASDYQSSEPQNR-RGNFAGVCLEDTVEISSVK 80

Query: 1130 TRIDSWISSRIHGVSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRA 951
            +RIDSWISSRI G+SRAR+QSSI+SGLVSVNGR IDKVSH+++ GD ++C + +LQPLRA
Sbjct: 81   SRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRA 140

Query: 950  EPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXX 771
            EPEDIPLDIV+EDE VLVVNKPAHMVVHPAPGN NGTLVN ILHHC LP +A        
Sbjct: 141  EPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSK--- 197

Query: 770  XXXXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSH 591
                             + Q S+EE+  + C+  +RPGIVHRLDKGTSGLLVVAKD+HSH
Sbjct: 198  VLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSH 257

Query: 590  SHLAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARY 411
            +HL+EQFK HTI+R+Y+SLT GVP+ +SGRIEVPI RD +NRIRM AV     SSR AR+
Sbjct: 258  AHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPS-PNSSRQARH 316

Query: 410  AASRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLR 231
            AASRY+V++    GG+ALV+WRLETGRTHQIRAHAKYLG+PLLGDEVYGGT++MALSLLR
Sbjct: 317  AASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLR 376

Query: 230  PRIPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLS 51
             R  S++H  LS +VSKLQRP LHA +LGFKHPHTG+ +QFSCPPP DF EVL QLR  S
Sbjct: 377  TRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLR--S 434

Query: 50   SSLAKN 33
              + KN
Sbjct: 435  IGIEKN 440


>gb|ACG41877.1| RNA binding protein [Zea mays]
          Length = 439

 Score =  509 bits (1312), Expect = e-176
 Identities = 259/411 (63%), Positives = 313/411 (76%), Gaps = 2/411 (0%)
 Frame = -2

Query: 1259 SSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRIDSWISSRIHG--VS 1086
            SS+P    +     +  A      +  H G RLEE V VG  ++R+D+WIS+R+ G  VS
Sbjct: 27   SSRPRAFYARCASSNASAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLGGGGVS 86

Query: 1085 RARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEPEDIPLDIVFEDEH 906
            RAR+Q+SIR+GLV+VNGR + KVSH VKGGD++SC VS+LQPLRAE EDIPLDIV+ED+H
Sbjct: 87   RARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDH 146

Query: 905  VLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXXXXXXXXXXXXXXD 726
            VLVVNKPAHMVVHPAPGN  GTLVNAILHHC++ T   + R+                  
Sbjct: 147  VLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLARSSAGDECPDSSDEDTDVFH 206

Query: 725  LCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRV 546
            +  DQ++ E++  +  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RV
Sbjct: 207  V--DQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRV 264

Query: 545  YISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAASRYKVIDNFVDGG 366
            YISLT G PNP+SGRIE  IARD NNRIRM A++G     R+AR AASRYKV + F  GG
Sbjct: 265  YISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAG--SGHRYARNAASRYKVREVFAGGG 322

Query: 365  AALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRIPSTYHTHLSNVV 186
            +ALV+WRLETGRTHQIRAHAKY+G+PLLGDE YGGT+SMALSLLRPR PS YH+ LSN++
Sbjct: 323  SALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRSPSKYHSGLSNLL 382

Query: 185  SKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLRFLSSSLAKN 33
            SK+ RP LHA SLGFKHP +G+ L+FSCPPPDDF EVL +LR ++SS A N
Sbjct: 383  SKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELRRVTSSDAPN 433


>ref|XP_020180196.1| RNA pseudouridine synthase 2, chloroplastic [Aegilops tauschii subsp.
            tauschii]
          Length = 442

 Score =  509 bits (1312), Expect = e-176
 Identities = 267/415 (64%), Positives = 313/415 (75%), Gaps = 4/415 (0%)
 Frame = -2

Query: 1292 LLCRNPIGSRF--SSKPLCCRSSYFGPSLEAPPQGEIRANHAGLRLEETVEVGAEKTRID 1119
            LL R    S F  +S+P C  S        A P    R  HAG RLEE V     ++R+D
Sbjct: 20   LLRRGASRSHFLRASRPRCVSSDAV-----AEPALARRGGHAGTRLEEAVPAAEGRSRVD 74

Query: 1118 SWISSRIHG--VSRARIQSSIRSGLVSVNGRTIDKVSHIVKGGDVISCMVSKLQPLRAEP 945
            +WIS+R+ G  VSRAR+Q+SIR+GLV+VNGR + KVSH VKGGD +SC VS+LQPLRAE 
Sbjct: 75   AWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDKVSCTVSELQPLRAEA 134

Query: 944  EDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMAFVKRNQXXXX 765
            EDIPLDIV+EDEH+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T   + R+     
Sbjct: 135  EDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARSPIYDE 194

Query: 764  XXXXXXXXXXXXDLCADQYSIEEIGVDNCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 585
                        D+  DQ++I E+  +  +A++RPGIVHRLDKGTSGLLVVAKD+HSH+ 
Sbjct: 195  CPESSDDDVDVFDV--DQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQ 252

Query: 584  LAEQFKQHTIHRVYISLTSGVPNPSSGRIEVPIARDSNNRIRMVAVSGLSKSSRHARYAA 405
            LAEQFK HTI RVYISLT GVP+P+S RIEVPI+RD NNR RMVA  G     R+A++AA
Sbjct: 253  LAEQFKLHTISRVYISLTCGVPSPNSARIEVPISRDPNNRTRMVAAPG--SGHRYAKHAA 310

Query: 404  SRYKVIDNFVDGGAALVQWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPR 225
            SRYKV + F  GG+ALV+WRLETGRTHQIRAHAKYLG PLLGDE YGGTKSMALSLLRPR
Sbjct: 311  SRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDETYGGTKSMALSLLRPR 370

Query: 224  IPSTYHTHLSNVVSKLQRPSLHALSLGFKHPHTGQFLQFSCPPPDDFAEVLEQLR 60
             PS YH  LSN+VSK+ RP LHA  LGFKHPH+G+ L+FSCPPPDDF EVL+QLR
Sbjct: 371  TPSKYHGDLSNLVSKIDRPCLHAALLGFKHPHSGEALEFSCPPPDDFTEVLDQLR 425