BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00006701
         (937 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX79108.1| copia-type polyprotein, partial [Trifolium pratense]   301   1e-95
gb|PKA46730.1| Retrovirus-related Pol polyprotein from transposo...   308   3e-93
gb|KZV32174.1| retrovirus-related Pol polyprotein from transposo...   283   2e-86
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   291   2e-86
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   289   6e-86
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   288   1e-85
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   288   4e-85
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   288   6e-85
gb|PKA46818.1| Retrovirus-related Pol polyprotein from transposo...   272   8e-85
ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabid...   282   2e-84
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]   285   3e-84
gb|PKA48313.1| Retrovirus-related Pol polyprotein from transposo...   283   3e-84
gb|OMO68768.1| Integrase, catalytic core [Corchorus capsularis]       284   4e-84
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]                        284   1e-83
gb|KZV33171.1| Integrase, catalytic core domain containing prote...   274   3e-83
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   283   4e-83
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   282   6e-83
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   281   1e-82
gb|KZV28520.1| hypothetical protein F511_15600 [Dorcoceras hygro...   268   2e-82
gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinen...   281   2e-82

>gb|PNX79108.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 535

 Score =  301 bits (772), Expect = 1e-95
 Identities = 141/186 (75%), Positives = 159/186 (85%)
 Frame = +3

Query: 3   GCVYDKLHRLPFPKTAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI*F 182
           GC+Y K+H LPFPKTAWR+  PLELVHADIC PT+T S GNKRYF+LFVD +TRMIWI F
Sbjct: 350 GCIYGKMHHLPFPKTAWRSQAPLELVHADICGPTRTPSLGNKRYFLLFVDDYTRMIWIYF 409

Query: 183 LEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSHS 362
           L+QKS+AF  FLHFKALVENQS + +KTLRTDRGGEFIYK FL+YC+E  I RQLT+ H+
Sbjct: 410 LDQKSEAFVKFLHFKALVENQSGHKLKTLRTDRGGEFIYKPFLNYCEEQGIHRQLTIRHT 469

Query: 363 PQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEAW 542
           PQ NG+AERKN TIVEMARSMLKGK LPN FWAEAV    YILNRSPTKAVR++TPFEAW
Sbjct: 470 PQQNGVAERKNRTIVEMARSMLKGKGLPNNFWAEAVSSAVYILNRSPTKAVRDRTPFEAW 529

Query: 543 HKRKPL 560
           H RKP+
Sbjct: 530 HGRKPV 535


>gb|PKA46730.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Apostasia shenzhenica]
          Length = 1112

 Score =  308 bits (790), Expect = 3e-93
 Identities = 153/256 (59%), Positives = 182/256 (71%), Gaps = 7/256 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFP-KTAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCVY K HRLPFP   +WRA  PLELVHAD+C P +T S  N RYFILF+D F+RM W+ 
Sbjct: 342  GCVYGKQHRLPFPIGKSWRARRPLELVHADVCGPMRTPSMNNSRYFILFIDDFSRMSWVF 401

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL  KSDA   F+ F+A  E +  Y IK LRTDRGGEF+   F  YCK++ I+RQLTV  
Sbjct: 402  FLVHKSDALDKFIEFRAFAEKECGYPIKVLRTDRGGEFLSHDFNLYCKKYGIRRQLTVRK 461

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            +P+ NGIAERKN T+VEMAR ML  K+L NKFWAEAV  + Y+LN SPTKAV N+TP+EA
Sbjct: 462  TPEQNGIAERKNRTVVEMARCMLHEKSLSNKFWAEAVATSVYLLNISPTKAVFNRTPYEA 521

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W KRKP V+ LKVFGCIAYAL  +  R K DKK EK IF+GYS+      L NP   KL+
Sbjct: 522  WWKRKPNVSNLKVFGCIAYALINANERGKMDKKSEKCIFVGYSDETKGYRLYNPKTEKLI 581

Query: 702  ISRDVIFDELAEWNWE 749
            + RD+IF E   WNW+
Sbjct: 582  VRRDIIFQENNSWNWK 597


>gb|KZV32174.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dorcoceras hygrometricum]
          Length = 699

 Score =  283 bits (723), Expect = 2e-86
 Identities = 144/309 (46%), Positives = 188/309 (60%), Gaps = 7/309 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+Y K  +  FP   +WRA+ PLELVHAD+C P +T + G  +YF+LFVD ++RM W+ 
Sbjct: 326  GCMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVY 385

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL+ KS+AF  F  FKALVE Q   ++K LRTDRGGEF    F  YC++H I ++LT  +
Sbjct: 386  FLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPY 445

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            +P+ NG+AERKN TIVEMARSMLK K LP  FWAEAV    Y++N SPTKAV NKTP+EA
Sbjct: 446  TPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEA 505

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W  ++P V  LK+FGCI Y L  +  R K ++K  K IFIGY        + NP+  K++
Sbjct: 506  WSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVI 565

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQQVIGNSPLSNQ*VTETS 881
            +SR+ +F+E   W WE+   +           T      ES      NS LS       S
Sbjct: 566  VSRNTVFNEEDSWQWEDNRKAPAFQFEDDNRETRRMTTSES------NSSLSPDGSNSVS 619

Query: 882  QVDPNIQLH 908
            +  P I  H
Sbjct: 620  RSSPTISTH 628


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  291 bits (744), Expect = 2e-86
 Identities = 144/262 (54%), Positives = 183/262 (69%), Gaps = 7/262 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  R  FP + AWRAS PLELVH DI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 445  GCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVY 504

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A   F  FKA+VENQS+  IK LR+D+GGE+I K F  YC+   I+RQLT  +
Sbjct: 505  FLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGY 564

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 565  SAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEA 624

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VFGCI YA   +Q R KFD K ++ IF+GY++      L N    K++
Sbjct: 625  WYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKII 684

Query: 702  ISRDVIFDELAEWNWENEEVSL 767
            ISRDVIFDE A WNW++ E S+
Sbjct: 685  ISRDVIFDESATWNWKSPEASI 706


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96256.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1167

 Score =  289 bits (740), Expect = 6e-86
 Identities = 145/283 (51%), Positives = 189/283 (66%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  R  FP + AWRAS PLELVH DI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 368  GCVFGKQIRASFPHSRAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVY 427

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A   F  FKA+VENQS+  IK LR+D+GGE+I K F  YC+   I+RQLT  +
Sbjct: 428  FLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGY 487

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 488  SAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEA 547

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VFGCI YA   +Q R KFD K ++ IF+GY++      L N    K++
Sbjct: 548  WYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKII 607

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQ 830
            ISRDVIFDE A WNW++ + S    +    +     + H +H+
Sbjct: 608  ISRDVIFDESATWNWKSPKASSTPLLPTTTITLGQPHMHGTHE 650


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  288 bits (738), Expect = 1e-85
 Identities = 145/283 (51%), Positives = 188/283 (66%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  R  FP + AWRAS PLELVH DI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 284  GCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVY 343

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A   F  FKA+VENQS+  IK LR+D+GGE+I K F  YC+   I+RQLT  +
Sbjct: 344  FLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGY 403

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 404  STQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEA 463

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VFGCI YA   +Q R KFD K ++ IF+GY++      L N    K++
Sbjct: 464  WYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKII 523

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQ 830
            I RDVIFDE A WNW++ E S    +    +     + H +H+
Sbjct: 524  IIRDVIFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHE 566


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF99717.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1335

 Score =  288 bits (738), Expect = 4e-85
 Identities = 145/283 (51%), Positives = 188/283 (66%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  R  FP + AWRAS PLELVHADI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 494  GCVFGKQIRASFPHSGAWRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVY 553

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A   F  FKA+VENQS+  IK LR+D+G E+I K F  YC+   I+RQLT  +
Sbjct: 554  FLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGY 613

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 614  SAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEA 673

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VFGCI YA   +Q R KFD K ++ IF+GY++      L N    K++
Sbjct: 674  WYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKII 733

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQ 830
            ISRD IFDE A WNW++ E S    +    +     + H +H+
Sbjct: 734  ISRDAIFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHE 776


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
 gb|AAP51797.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1350

 Score =  288 bits (737), Expect = 6e-85
 Identities = 144/261 (55%), Positives = 181/261 (69%), Gaps = 7/261 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  R  FP + AWRAS PLELVH DI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 417  GCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVY 476

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A   F  FKA+VENQS+  IK LR+D+GGE+I K F  YC+   I+RQLT  +
Sbjct: 477  FLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGY 536

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 537  SAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEA 596

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VFGCI YA   +Q R KFD K +  IF+GY++      L N    K++
Sbjct: 597  WYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDWCIFVGYADGIKGYRLYNLEKKKII 656

Query: 702  ISRDVIFDELAEWNWENEEVS 764
            ISRDVIFDE A WNW++ E S
Sbjct: 657  ISRDVIFDESATWNWKSPEAS 677


>gb|PKA46818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Apostasia shenzhenica]
          Length = 485

 Score =  272 bits (696), Expect = 8e-85
 Identities = 144/324 (44%), Positives = 195/324 (60%), Gaps = 15/324 (4%)
 Frame = +3

Query: 6    CVYDKLHRLPFP-KTAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI*F 182
            C+Y K  R  F      RA++PLELV++D+C P +  S    RYFILF+D +TRM W+ F
Sbjct: 162  CLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYF 221

Query: 183  LEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSHS 362
            L+ KS+A   F  FKA VE QS Y IK LRTDRGGEF+   F  +C+E+ I R+LT  ++
Sbjct: 222  LKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYT 281

Query: 363  PQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEAW 542
            P+ NG+AERKN TIVEMARS+LK K +PN+FWAE+V    Y+LN SPTKA+ N+T +E W
Sbjct: 282  PEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVW 341

Query: 543  HKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLVI 704
              RK  ++ LK+FGCIAY    S  R K + K EK IFIGY        L NP + KL+I
Sbjct: 342  KGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLII 401

Query: 705  SRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESH--------QQVIGNSPLSN 860
            SR VIF+E   WNW ++++  Q      G  +  ++  ES           + G+S  S 
Sbjct: 402  SRSVIFEENLSWNWNDDKMEFQRHNYVEGFISDSSSLTESENLNVLSPSSMLTGSSSSSP 461

Query: 861  Q*VTETSQVDPNIQLHPHEDDEES 932
              +  T   + N+  +    +E+S
Sbjct: 462  STLFMTPSSNRNLMPYTSSSEEDS 485


>ref|XP_020867873.1| uncharacterized protein LOC110224828 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 961

 Score =  282 bits (722), Expect = 2e-84
 Identities = 138/259 (53%), Positives = 178/259 (68%), Gaps = 7/259 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+  K  ++ FPK ++ RA  PLEL+H D+C P +  S G   YF+LF+D F+R  W+ 
Sbjct: 503  GCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVY 562

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS+ F  F  FKA VE +S   IK++R+DRGGEF  K FL YC+++ I+RQLTV  
Sbjct: 563  FLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 622

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SPQ NG+AERKN TI+EMARSMLK K LP + WAEAV    Y+LNRSPTK++  KTP EA
Sbjct: 623  SPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEA 682

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W  RKP V+ L+VFG IA+A    + R K D K EKYIFIGY       +L NP   K +
Sbjct: 683  WSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTI 742

Query: 702  ISRDVIFDELAEWNWENEE 758
            ISR+V+FDE  EW+W++ E
Sbjct: 743  ISRNVVFDEEEEWDWKSNE 761


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score =  285 bits (729), Expect = 3e-84
 Identities = 139/259 (53%), Positives = 178/259 (68%), Gaps = 7/259 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+Y K  + PFPK  + RAS+ LE++HAD+C P QT SFG  RYF+LF +  +RM W+ 
Sbjct: 409  GCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVY 468

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL+ K++ F TF  FKA VE QS   IK LRTDRGGEF+   F  +C+E  + R+LT  +
Sbjct: 469  FLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPY 528

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SP+ NG+AERKN T+VEMARSM+K KNL N FWAE V    Y+LN SPTKAV N+TP+EA
Sbjct: 529  SPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEA 588

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W+ +KP V+ LKVFG +AY L  S  R K D+K  K IFIGY       +L NP + K++
Sbjct: 589  WYGKKPWVSHLKVFGSVAYTLIESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKII 648

Query: 702  ISRDVIFDELAEWNWENEE 758
            +SR+V+FDE A W W   E
Sbjct: 649  VSRNVVFDEKASWTWRVSE 667


>gb|PKA48313.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Apostasia shenzhenica]
          Length = 1063

 Score =  283 bits (725), Expect = 3e-84
 Identities = 148/287 (51%), Positives = 189/287 (65%), Gaps = 18/287 (6%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+Y K  R  FP   +WRA  PL+L+HADIC P QT S  N +YF+LFVD  +R  W+ 
Sbjct: 288  GCIYGKHQRSSFPVGKSWRARKPLQLIHADICGPMQTPSLNNSKYFLLFVDDLSRKSWLY 347

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            F++QKS+AF+ FL FKA  E +    I+ LRTDRG EF    F  +C+ + I+RQLT S+
Sbjct: 348  FIKQKSEAFSKFLIFKASAEKECGEPIQILRTDRGSEFCSNEFTKFCQLNGIKRQLTASY 407

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            +PQ NG+AERKN TIVEMARSMLK KNLP  FWAEAV  T ++LN SPTKAV N TP+EA
Sbjct: 408  TPQQNGVAERKNRTIVEMARSMLKAKNLPISFWAEAVATTVHLLNISPTKAVWNSTPYEA 467

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+  KP V+ L+VFGCI YA   ++ R+KFD K  K IFIGYS+      + NP   +L 
Sbjct: 468  WYGVKPNVSNLRVFGCIVYAHVNTEVRQKFDSKSTKCIFIGYSQETKGYRVYNPITKQLY 527

Query: 702  ISRDVIFDELAEWNW-----------ENEEVSLQHDITAPGLNTPFA 809
            +SRDVIFDE A W+W           E  + S++ +I+A   N  +A
Sbjct: 528  VSRDVIFDENACWDWKPTCFEEAIHREEWKQSMEEEISAINKNKTWA 574


>gb|OMO68768.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1149

 Score =  284 bits (727), Expect = 4e-84
 Identities = 137/260 (52%), Positives = 176/260 (67%), Gaps = 7/260 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC   K HR  FPK  AWRA + LELVH D+C P  T S    RYFILF+D +TRM W+ 
Sbjct: 386  GCALGKHHRQAFPKGVAWRAKSMLELVHTDVCGPMTTPSHSGNRYFILFIDDYTRMTWVY 445

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            F+ Q+S+ F  F  FK+LVE QS ++IK LR+D G E+  + F  +C++  ++RQLTV +
Sbjct: 446  FMRQRSEVFTIFKKFKSLVEKQSGHYIKVLRSDNGKEYTSREFEMFCEDEVVERQLTVGY 505

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SPQ NG++ERKN T++EMA+SML  KNLP  FWAEAV+   Y++NR PTKAV N+ PFEA
Sbjct: 506  SPQQNGVSERKNQTVMEMAKSMLFEKNLPKSFWAEAVNTAVYLINRCPTKAVWNQAPFEA 565

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W  RKP V  LKVFGC+ YA    + R K D+  EK IF+GYS       L +  ++K++
Sbjct: 566  WSGRKPSVEHLKVFGCVCYAQIPKEKRHKLDETSEKCIFVGYSTMSKGYRLYSLKSSKVI 625

Query: 702  ISRDVIFDELAEWNWENEEV 761
            ISRDVIFDE   WNWE  +V
Sbjct: 626  ISRDVIFDENVTWNWEENKV 645


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]
          Length = 1314

 Score =  284 bits (727), Expect = 1e-83
 Identities = 142/283 (50%), Positives = 185/283 (65%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GCV+ K  +  FP + AWRAS P ELVH DI     T+S G   YFI F+D +TRMIW+ 
Sbjct: 501  GCVFGKQIQASFPHSGAWRASAPFELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVY 560

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS A  TF  FK +VENQS+  IK LR+D+GGE+I K F  YC+   I+RQLT  +
Sbjct: 561  FLKEKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGY 620

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            S Q NG+AERKN TI +MA SML+ K +P  FWAEAV+   YILNRSPTKAV N+TPFEA
Sbjct: 621  SAQQNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEA 680

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLV 701
            W+ +KP++  ++VF CI YA   +Q R KFD K  + IF+GY++      L N    K++
Sbjct: 681  WYGKKPVIGHMRVFACICYAQVPAQKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKKII 740

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQ 830
            ISRDV FDE A WNW++ E S    +    +     + H +H+
Sbjct: 741  ISRDVFFDESATWNWKSPEASSTPLLPTTTITLGQPHMHGTHE 783


>gb|KZV33171.1| Integrase, catalytic core domain containing protein [Dorcoceras
            hygrometricum]
          Length = 702

 Score =  274 bits (701), Expect = 3e-83
 Identities = 137/265 (51%), Positives = 177/265 (66%), Gaps = 7/265 (2%)
 Frame = +3

Query: 6    CVYDKLHRLPFPKTAW-RASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI*F 182
            C++ K  R  FPK +  RA  PL+LVHAD+C P +  SFG   YF+LF+D F+R  W+ F
Sbjct: 366  CLFSKHPRKSFPKKSLSRAIKPLQLVHADVCGPIKPQSFGKSCYFVLFIDDFSRKTWVYF 425

Query: 183  LEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSHS 362
            L+ KS+AF  F  FK LVE +S Y IK LRTDRGGEF    F  +C+ H I+R LTV  S
Sbjct: 426  LKYKSEAFDAFKKFKTLVEKESGYEIKALRTDRGGEFTSNEFNSFCELHGIRRPLTVPRS 485

Query: 363  PQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEAW 542
            PQ NG+AERKN TI+ MAR+MLK KN+P +FWAEAV    Y+ NRSPTK+++N TP EAW
Sbjct: 486  PQQNGVAERKNRTILNMARTMLKSKNMPKEFWAEAVACAVYLSNRSPTKSLKNVTPQEAW 545

Query: 543  HKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLVI 704
              + P V+ L++FG IAYA    Q R K D +  K +FIGY+E      L +P + ++VI
Sbjct: 546  SGQTPGVHHLRIFGSIAYAQVPEQERSKLDDRSRKLVFIGYNENSKGYKLFSPDSRRIVI 605

Query: 705  SRDVIFDELAEWNWENEEVSLQHDI 779
            SRDV FDE A WNW ++  +  +DI
Sbjct: 606  SRDVEFDEDATWNWSSKTENDSYDI 630


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  283 bits (725), Expect = 4e-83
 Identities = 144/283 (50%), Positives = 184/283 (65%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+Y K  + PFPK  + RAS+ LE++HAD+C P QT SFG  RYF+LF D  +RM W+ 
Sbjct: 460  GCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVY 519

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL+ K++ F TF  FKA VE QS   IK LRTDRGGEF+   F  + +E  + R+LT  +
Sbjct: 520  FLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPY 579

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SP  NG+AERKN T+VEMARSM+K KNL N FWAE V    Y+LN SPTKAV N+TP+EA
Sbjct: 580  SPXQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEA 639

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W+ RKP V+ LKVFG +AY L  S  R K D+K  K IFIGY       +L NP + K++
Sbjct: 640  WYGRKPWVSHLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKII 699

Query: 702  ISRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQ 830
            +SR+V+FDE A W W   E     +I++        +Q  S Q
Sbjct: 700  VSRNVVFDEKASWTWRVSEDGALVEISSESEVAQSEDQQPSXQ 742


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
 gb|AAG50765.1|AC079131_10 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  282 bits (722), Expect = 6e-83
 Identities = 139/259 (53%), Positives = 177/259 (68%), Gaps = 7/259 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+  K  ++ FPK ++ RA  PLEL+H D+C P +  S G   YF+LF+D F+R  W+ 
Sbjct: 504  GCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVY 563

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL++KS+ F  F  FKA VE +S   IKT+R+DRGGEF  K FL YC+++ I+RQLTV  
Sbjct: 564  FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 623

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SPQ NG+AERKN TI+EMARSMLK K LP + WAEAV    Y+LNRSPTK+V  KTP EA
Sbjct: 624  SPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEA 683

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W  RKP V+ L+VFG IA+A    + R K D K EKYIFIGY       +L NP   K +
Sbjct: 684  WSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTI 743

Query: 702  ISRDVIFDELAEWNWENEE 758
            ISR+++FDE  EW+W + E
Sbjct: 744  ISRNIVFDEEGEWDWNSNE 762


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  281 bits (719), Expect = 1e-82
 Identities = 138/259 (53%), Positives = 175/259 (67%), Gaps = 7/259 (2%)
 Frame = +3

Query: 3    GCVYDKLHRLPFPK-TAWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI* 179
            GC+Y K  + PFPK  + RAS+ LE++HAD+C P QT SFG  RYF+LF D  +RM W+ 
Sbjct: 475  GCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVY 534

Query: 180  FLEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSH 359
            FL+ K++ F TF  FKA VE QS   IK LRTDRGGEF+   F  +C+E  + R+LT  +
Sbjct: 535  FLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPY 594

Query: 360  SPQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEA 539
            SP+ NG+AERKN T+VEMARSM+K KNL N FWAE V    Y+LN SPTKAV N+TP+EA
Sbjct: 595  SPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEA 654

Query: 540  WHKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYS------ELLNPSNNKLV 701
            W+ RKP V+ LKVFG +AY L  S      D+K  K IFIGY       +L NP + K++
Sbjct: 655  WYGRKPWVSHLKVFGSVAYTLIDSHNHSNLDEKSIKCIFIGYCSQSKGYKLYNPVSGKII 714

Query: 702  ISRDVIFDELAEWNWENEE 758
            +SR+V+ DE A W W   E
Sbjct: 715  VSRNVVXDEKASWTWRVSE 733


>gb|KZV28520.1| hypothetical protein F511_15600 [Dorcoceras hygrometricum]
          Length = 539

 Score =  268 bits (685), Expect = 2e-82
 Identities = 134/265 (50%), Positives = 174/265 (65%), Gaps = 7/265 (2%)
 Frame = +3

Query: 6   CVYDKLHRLPFPKTAW-RASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI*F 182
           C++ K  R  FPK +  RA  PL+LVHAD+C P +  SFG   YF+LF+D F+R  W+ F
Sbjct: 67  CLFSKHPRKSFPKQSLSRAIKPLQLVHADVCGPIKPQSFGKSCYFVLFIDDFSRKTWVYF 126

Query: 183 LEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSHS 362
           L+ KS+AF  F  FK LVE +S Y IK LRTDRGGEF    F  +C+ H I+R LTV  S
Sbjct: 127 LKYKSEAFDAFKKFKTLVEKESGYEIKALRTDRGGEFTSNEFNSFCELHGIRRPLTVPRS 186

Query: 363 PQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEAW 542
           PQ NG+AERKN TI+ MAR+MLK KN+  +FWAE V    Y+ NRSPTK+++N TP E W
Sbjct: 187 PQQNGVAERKNRTILNMARTMLKSKNMSKEFWAEVVACAVYLSNRSPTKSLKNVTPQETW 246

Query: 543 HKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLVI 704
             + P V+ L++FG IAYA    Q R K D +  K +FIGY+E      L +P + ++VI
Sbjct: 247 SGQTPGVHHLRIFGSIAYAQVPEQERSKLDDRSRKLVFIGYNENSKGYKLFSPDSRRIVI 306

Query: 705 SRDVIFDELAEWNWENEEVSLQHDI 779
           SRDV FDE A WNW ++  +  +DI
Sbjct: 307 SRDVEFDEDATWNWRSKTENDSYDI 331


>gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1270

 Score =  281 bits (718), Expect = 2e-82
 Identities = 146/303 (48%), Positives = 188/303 (62%), Gaps = 7/303 (2%)
 Frame = +3

Query: 6    CVYDKLHRLPFPKT-AWRASNPLELVHADICSPTQTLSFGNKRYFILFVDAFTRMIWI*F 182
            CV  K HR PFPK  AWRA   L+LVH+DIC P   +S GNKRYFI F D F+R  W+ F
Sbjct: 473  CVIGKQHRDPFPKAGAWRAKTVLQLVHSDICGPIHPVSNGNKRYFITFTDDFSRKTWVYF 532

Query: 183  LEQKSDAFATFLHFKALVENQSDYHIKTLRTDRGGEFIYKRFLDYCKEHRIQRQLTVSHS 362
            +EQKS+AF  F  FK LVE +S   IK LRTDRGGE+    F+ +C  + I+RQLT ++S
Sbjct: 533  MEQKSEAFGVFKSFKTLVEKESGKEIKILRTDRGGEYNSSAFMSFCASYGIRRQLTTAYS 592

Query: 363  PQ*NGIAERKNMTIVEMARSMLKGKNLPNKFWAEAVHVTAYILNRSPTKAVRNKTPFEAW 542
            PQ NG++ERKN TI+ M RSMLK   +P +FW EAV+ + ++LNRSPT AV++ TP EAW
Sbjct: 593  PQQNGVSERKNRTILNMVRSMLKTSGIPKEFWPEAVNWSVHVLNRSPTVAVKHMTPEEAW 652

Query: 543  HKRKPLVNQLKVFGCIAYALTTSQTREKFDKKGEKYIFIGYSE------LLNPSNNKLVI 704
              RKP V+  +VFGC+AY+    + R K D KG K IF+G SE      L NP   K++I
Sbjct: 653  SNRKPAVDHFRVFGCVAYSHVPDERRRKLDDKGVKCIFLGVSEESKAYRLFNPITKKIII 712

Query: 705  SRDVIFDELAEWNWENEEVSLQHDITAPGLNTPFANQHESHQQVIGNSPLSNQ*VTETSQ 884
            SRDV+FDE + W+W N     Q  + A          HE        SP++ +  +E   
Sbjct: 713  SRDVVFDEESSWDW-NGIGQQQVPLIADEGRVDSETNHELEAPNESPSPVAARSPSEVQP 771

Query: 885  VDP 893
            V P
Sbjct: 772  VSP 774