BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00004877
         (1277 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ASA40123.1| ORF3 [Dioscorea bacilliform virus]                     162   5e-67
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   238   1e-65
ref|YP_009229919.1| polyprotein [Blackberry Virus F] >gi|6892539...   159   6e-65
gb|ASA40120.1| ORF3 [Dioscorea bacilliform virus]                     157   6e-64
gb|ATZ69530.1| ORF3 polyprotein [Cacao Bacilliform SriLanka Virus]    165   2e-62
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   229   2e-62
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               227   9e-62
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               226   1e-61
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   226   2e-61
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   226   2e-61
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               226   2e-61
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   224   5e-61
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   223   3e-60
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   222   5e-60
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               221   6e-60
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         219   4e-59
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         219   4e-59
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962...   219   4e-59
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   162   2e-58
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         217   2e-58

>gb|ASA40123.1| ORF3 [Dioscorea bacilliform virus]
          Length = 1946

 Score =  162 bits (411), Expect(2) = 5e-67
 Identities = 100/288 (34%), Positives = 146/288 (50%), Gaps = 34/288 (11%)
 Frame = +1

Query: 82   HRWQHNDFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXXX 261
            H W+ +  +      C  CKR+T Q  R HC +C  T C +CGP YFN            
Sbjct: 1067 HTWEMHPEMIGQTPRCLTCKRETQQSWRAHCSKCQTTSCGMCGPNYFN---IKIPVRRVE 1123

Query: 262  XXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQK--VEELELEKNLQQDFQELYEKD 435
               + P  L+++QQ YI W   EIER+  E+   ++K  +E   +++N+Q++  E   K 
Sbjct: 1124 PVRYDPKPLLEQQQVYIKWADAEIERLKGELKAVQEKAALEAQNMQENVQREI-EAQSKI 1182

Query: 436  K*QEIN----EKQKKGKGIMIHDEEAHVLFHE*IKTV----------------------A 537
              QEI     E   + + +   ++   +  H+  K +                       
Sbjct: 1183 HMQEIEAIKLEVDTENEELRFENDRLKLEVHDLKKLLDAIKGKEPLEDEDGEGTSAFLRE 1242

Query: 538  EEQQK------QARPRLVKNMLYNMIVELEIPGIPKFQVRAILDTGAMTCCIDEALIPKE 699
            EE +K        +PR   N LYN+ VE  IP IP F+VRAILDTGA TCC DE  IP +
Sbjct: 1243 EEHEKIFSAEAAVQPRRNGNKLYNLNVEFNIPNIPPFRVRAILDTGATTCCADEKAIPND 1302

Query: 700  ALEKNNFVVHFSGINSRQTANKKLKNG*IYIGENLFRIPYTYGFQMQL 843
            ALE++ + V F+G+NS   +NKK+K G + IGE+ FRIP+TY F ++L
Sbjct: 1303 ALEESPYRVRFTGVNSTSHSNKKMKAGVMKIGEHFFRIPFTYIFPLKL 1350



 Score =  122 bits (306), Expect(2) = 5e-67
 Identities = 62/113 (54%), Positives = 81/113 (71%)
 Frame = +3

Query: 846  DGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIEEMDLKEDEYISI 1025
            D I MIIGCNFI+AM GG+RIEGN VTFYK +TTI T P AS AA+IEE+DL+E+E+IS+
Sbjct: 1351 DDIQMIIGCNFIRAMAGGIRIEGNEVTFYKNVTTIKTLPYASAAASIEELDLEEEEFISL 1410

Query: 1026 RETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             +        ++E F ++ +P I+ LKE GFI + P+ H  KNK+ C LDI N
Sbjct: 1411 TQAAEPTVTNNKE-FCQRIEPTIKALKEQGFIGEEPMKHWVKNKVTCKLDIIN 1462


>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  238 bits (607), Expect = 1e-65
 Identities = 120/261 (45%), Positives = 178/261 (68%), Gaps = 7/261 (2%)
 Frame = +1

Query: 82   HRWQHNDFVKP-PHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H+W+HN  ++   +  C  C+  TM+RARIHCP+C  T CNLCGPYYF K          
Sbjct: 897  HKWEHNGEIQQFVYLKCLGCQCPTMKRARIHCPKCKATACNLCGPYYFKKEVPVAPPPPT 956

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEEL----ELEKNLQQDFQELY 426
                  P +LI EQQ +I W + EIER+ KE++Y+K+  E       + ++LQ+D++EL 
Sbjct: 957  PMN---PRKLIMEQQNHIQWCEVEIERLEKEVSYWKKLYENALRATGVIEDLQKDYKELL 1013

Query: 427  EKDK*QEINEKQKKGKGIMIHDE--EAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIV 600
             +D+     +++++ KG+MI +E  +A+ L  E +  VA +++++ + ++V+NMLYN I+
Sbjct: 1014 SEDE----EKRKRRAKGVMIIEEGEQANFLQEEKVNKVAVQEEQRPK-KMVRNMLYNFII 1068

Query: 601  ELEIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG 780
             ++IPGI KF V+AILDTGA TCCID+  IPKEALE+N ++V FSG+NS  TANKKLK G
Sbjct: 1069 SIDIPGIDKFSVKAILDTGATTCCIDQESIPKEALEENTYLVRFSGVNSTMTANKKLKGG 1128

Query: 781  *IYIGENLFRIPYTYGFQMQL 843
             ++IGEN+FRIPYTY F +++
Sbjct: 1129 RMFIGENMFRIPYTYSFPIKM 1149



 Score =  137 bits (346), Expect = 3e-31
 Identities = 67/127 (52%), Positives = 92/127 (72%)
 Frame = +3

Query: 813  PLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIEE 992
            P    F   + DG+ MI+GCNFI+AM GGVRIEGN VTFYK LT INT+ +  IA  ++E
Sbjct: 1140 PYTYSFPIKMEDGVQMIVGCNFIRAMYGGVRIEGNVVTFYKNLTVINTSQSTEIARMLQE 1199

Query: 993  MDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYL 1172
             D+ ++E   I+E V+ N G+SRESFL++ + LI +LKEAG+I +NPL H +KN++ C L
Sbjct: 1200 -DVDDEELWQIQEAVYINIGKSRESFLKRFEALINQLKEAGYIGENPLQHWEKNRVVCQL 1258

Query: 1173 DIKNLEY 1193
            DIKN ++
Sbjct: 1259 DIKNPDF 1265


>ref|YP_009229919.1| polyprotein [Blackberry Virus F]
 gb|AHX37579.1| polyprotein [Blackberry Virus F]
          Length = 1948

 Score =  159 bits (401), Expect(2) = 6e-65
 Identities = 96/252 (38%), Positives = 130/252 (51%)
 Frame = +1

Query: 82   HRWQHNDFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXXX 261
            H  + N  V+   E C+ C+  T +R R HC  C IT C +C  +Y              
Sbjct: 973  HTLEANCEVEAGKEKCSYCQYPTFKRMRCHCKGCGITACPMCSKFYLEYLVTPEPPAPKQ 1032

Query: 262  XXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK* 441
                   RLIQE   Y  +   E ER+ + IN  K+ +E+LE  +   + F +  E+ K 
Sbjct: 1033 YSS--KDRLIQELMSYNVYLLSENERLQEIIN--KKLIEDLEKGRMEAERFDQAKERRKG 1088

Query: 442  QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPGI 621
              I             +E A  +  E   +++   +  +  R V N LYNM+V + IPG+
Sbjct: 1089 VVIRTPSGSVHEASSDEETAMAITEE--TSLSSTTEAPSHGRKVINRLYNMVVNINIPGV 1146

Query: 622  PKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGEN 801
              F VRAILDTGA TCC+D+  +P EALEK+ + VHFSGINSRQ A  K K G + IGEN
Sbjct: 1147 KPFSVRAILDTGATTCCVDKGAVPAEALEKSPYAVHFSGINSRQLAEYKFKQGQMEIGEN 1206

Query: 802  LFRIPYTYGFQM 837
             FRIP+TY F M
Sbjct: 1207 RFRIPFTYSFPM 1218



 Score =  119 bits (298), Expect(2) = 6e-65
 Identities = 55/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
 Frame = +3

Query: 813  PLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAA-AIE 989
            P    F   ++DGI M++GCNFI++M GG+RIEGN +TFYK +TT+ T      +  A+E
Sbjct: 1211 PFTYSFPMGMKDGIEMLLGCNFIRSMYGGLRIEGNLLTFYKNVTTVTTVQNTEASKLAVE 1270

Query: 990  EMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACY 1169
            E+ L+ +EY SIRE V+Y+ G +   F  + +PL++RLKE G++ + P+ H  KN++ C 
Sbjct: 1271 ELGLEAEEYYSIREMVYYSLGHTSPKFQERFKPLLERLKEQGYVGEEPMRHWSKNQVKCK 1330

Query: 1170 LDIKN 1184
            L+I N
Sbjct: 1331 LEIIN 1335


>gb|ASA40120.1| ORF3 [Dioscorea bacilliform virus]
          Length = 2005

 Score =  157 bits (397), Expect(2) = 6e-64
 Identities = 100/296 (33%), Positives = 141/296 (47%), Gaps = 42/296 (14%)
 Frame = +1

Query: 82   HRWQHNDFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXXX 261
            H W+ +  +      C CCKR T +  R +C  C    C +CGP YFN T          
Sbjct: 1123 HSWELHPPMLGQVPRCLCCKRDTQENWRAYCSRCQTVTCGMCGPNYFNLTVPVKKATPA- 1181

Query: 262  XXXFFPHR-LIQEQQYYISWYQGEIERMTKEINYYKQ----KVEELELEKNLQQDFQELY 426
               FF H+ ++++QQ YI W + EI R+  E+   K     K++  E E + Q+D   L 
Sbjct: 1182 ---FFDHKPMLEQQQLYIKWAESEIARLKGELEILKTTSEAKLKASEEEASRQKDAMRLE 1238

Query: 427  EKDK*QEIN-------------EKQKKGKGIMIHDEEAHVLFHE*I-KTVAEEQQKQA-- 558
               + +E+              E +     + I + E  +  HE   K  AEE++  A  
Sbjct: 1239 VDTENEELRHRVALLELKNDALELENHDHKVRIGELELQIEGHELAEKMAAEEEEANAAE 1298

Query: 559  ---------------------RPRLVKNMLYNMIVELEIPGIPKFQVRAILDTGAMTCCI 675
                                 RPR   N LYN+  E+ IPG+P F++RAILDTGA TCC+
Sbjct: 1299 ETVAYLIEEENEKICSAETAIRPRRGGNKLYNLTAEIIIPGVPPFKLRAILDTGATTCCV 1358

Query: 676  DEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGENLFRIPYTYGFQMQL 843
            D   +PKEALE++ F   F+ IN+   AN KLK G + I  N FRIPY Y F ++L
Sbjct: 1359 DIKAVPKEALEESAFQARFNSINATSVANLKLKPGTMKIEGNTFRIPYAYTFTLKL 1414



 Score =  117 bits (293), Expect(2) = 6e-64
 Identities = 60/114 (52%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
 Frame = +3

Query: 846  DGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAAS-IAAAIEEMDLKEDEYIS 1022
            D + MI+GCNFI++M GGVRIEGN VTFYK +TTI T P +S   AAIEE+DL+E+EYIS
Sbjct: 1415 DDVQMILGCNFIRSMGGGVRIEGNDVTFYKNVTTIKTLPYSSKTVAAIEELDLEEEEYIS 1474

Query: 1023 IRETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            I      +T ++ +S    C+P+++ LK+ GFI + P+ H QKN++ C LDI N
Sbjct: 1475 IAS----STPKAAQSSKEFCEPILRALKDQGFIGEEPMKHWQKNQVVCTLDIIN 1524


>gb|ATZ69530.1| ORF3 polyprotein [Cacao Bacilliform SriLanka Virus]
          Length = 1772

 Score =  165 bits (417), Expect(2) = 2e-62
 Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 2/254 (0%)
 Frame = +1

Query: 82   HRWQHND-FVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H WQ N+  ++  +  C  CK +T +R RIHCP C +T C +C  +Y  +          
Sbjct: 859  HPWQKNEEILEAKYIRCFFCKIETNKRMRIHCPLCKLTACPMCSSFYLKEKIKPEPVDRR 918

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                    +L+QE   ++ + QGE++R+ +E+ Y+K K ++ E      + F+E  ++  
Sbjct: 919  SYQP--REKLLQELLIHVDYLQGEVDRLKEEVAYWKDKAQK-EDPVQFYEAFEEFLQQ-- 973

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQAR-PRLVKNMLYNMIVELEIP 615
                 EK +KGKGI + + +      E +K + E  + Q R PR + N LYN+ VE  +P
Sbjct: 974  -----EKARKGKGISMEEPQ------ESMKLLEEAFKIQERGPRKIINRLYNLRVEFNVP 1022

Query: 616  GIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIG 795
            G+  F +  ILDTGA +CC +   IPKEALE+ N+ V+F G+NS+Q A K++KNG + IG
Sbjct: 1023 GVALFNLNGILDTGATSCCCNLQAIPKEALEQLNYKVNFKGVNSQQDACKRIKNGEMKIG 1082

Query: 796  ENLFRIPYTYGFQM 837
            EN FRIP  Y   M
Sbjct: 1083 ENRFRIPLIYALDM 1096



 Score =  105 bits (261), Expect(2) = 2e-62
 Identities = 53/114 (46%), Positives = 77/114 (67%)
 Frame = +3

Query: 843  RDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIEEMDLKEDEYIS 1022
            +DGI ++IGCNFI++MQGG+RIEGNT+TFYK +TTI T+ +  I     +++   +EY  
Sbjct: 1099 QDGIQLLIGCNFIRSMQGGLRIEGNTITFYKNVTTIETSQSTEII----QLNEVTEEYFL 1154

Query: 1023 IRETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            I+E V YN G++ E+F  +   +++ L + GF+  NPL H  KN I C LDI N
Sbjct: 1155 IKEMVHYNEGKTLEAFRMKFGGILESLAKEGFVGLNPLQHWAKNGIKCKLDIIN 1208


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  229 bits (583), Expect = 2e-62
 Identities = 118/256 (46%), Positives = 160/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1029 HEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQA 1088

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL     
Sbjct: 1089 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKEL----- 1140

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
               ++ +++K KGI+I +   +    E  + +A    +  + R VKNMLYNM V +EIPG
Sbjct: 1141 -AGVDSRRRKDKGIVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPG 1199

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +KLK G ++I E
Sbjct: 1200 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKTGKMFINE 1259

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1260 HYFRIPYCYSFEMQIG 1275



 Score =  111 bits (278), Expect = 2e-22
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQK+K    ++N H+   F  P    F   + DGI +
Sbjct: 1224 PKDALEENSFVVNFSGINSKQQVKQKLKTGKMFINEHY---FRIPYCYSFEMQIGDGIQL 1280

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRE 1031
            I+GCNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    E   E +L  +E+  I+E
Sbjct: 1281 ILGCNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQE 1340

Query: 1032 TVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             V Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 1341 MVAYSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKN 1391


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  227 bits (578), Expect = 9e-62
 Identities = 118/256 (46%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1023 HEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPIPQA 1082

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 1083 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGADS 1139

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + VA    +  + R VKNMLYNM V +EIPG
Sbjct: 1140 ------RRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRMEIPG 1193

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +K+K G ++I E
Sbjct: 1194 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISE 1253

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1254 HYFRIPYCYSFEMQIG 1269



 Score =  110 bits (275), Expect = 4e-22
 Identities = 68/168 (40%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIG 869
            P   + E  F   F     K   KQKIK          F  P    F   + DGI +I+G
Sbjct: 1218 PKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILG 1277

Query: 870  CNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRETVF 1040
            CNFI++M GGVR+EGNT+TFYKQ+T+INT  AA      E   E +L  +E+  I+E V 
Sbjct: 1278 CNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPHLQQEEEGKEEELNLEEHRLIQEMVA 1337

Query: 1041 YNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 1338 YSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKN 1385


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  226 bits (577), Expect = 1e-61
 Identities = 118/256 (46%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1014 HEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPIPQA 1073

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 1074 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGTDA 1130

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + VA    +  + R V+NMLYNM V +EIPG
Sbjct: 1131 ------RRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVRNMLYNMDVRMEIPG 1184

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +KLK G ++I E
Sbjct: 1185 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINE 1244

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1245 HYFRIPYCYSFEMQIG 1260



 Score =  111 bits (278), Expect = 2e-22
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQK+K    ++N H+   F  P    F   + DGI +
Sbjct: 1209 PKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHY---FRIPYCYSFEMQIGDGIQL 1265

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRE 1031
            I+GCNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    E   E +L  +E+  I+E
Sbjct: 1266 ILGCNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQE 1325

Query: 1032 TVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             V Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 1326 MVAYSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKN 1376


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  226 bits (576), Expect = 2e-61
 Identities = 117/256 (45%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 537  HEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQA 596

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 597  P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGTDA 653

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + +A    +  + R VKNMLYNM V +EIPG
Sbjct: 654  ------RRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPG 707

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +K+K G ++I E
Sbjct: 708  IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINE 767

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 768  HYFRIPYCYSFEMQIG 783



 Score =  114 bits (284), Expect = 3e-23
 Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQKIK    ++N H+   F  P    F   + DGI +
Sbjct: 732  PKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINEHY---FRIPYCYSFEMQIGDGIQL 788

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIEEM--DLKEDEYISIRET 1034
            I+GCNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    EE   +L  +E+  I+E 
Sbjct: 789  ILGCNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLIQQDEEKEEELNLEEHRLIQEM 848

Query: 1035 VFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            V Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 849  VAYSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNRVVCHLDIKN 898


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  226 bits (576), Expect = 2e-61
 Identities = 117/256 (45%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1028 HEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKRITVQPMPQA 1087

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL     
Sbjct: 1088 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKEL----- 1139

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
               ++ +++K KG++I +   +    E  + +A    +  + R VKNMLYNM V +EIPG
Sbjct: 1140 -AGVDSRRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPG 1198

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +KLK G ++I E
Sbjct: 1199 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINE 1258

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F MQ+G
Sbjct: 1259 HYFRIPYCYSFVMQIG 1274



 Score =  110 bits (275), Expect = 4e-22
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQK+K    ++N H+   F  P    F   + DGI +
Sbjct: 1223 PKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHY---FRIPYCYSFVMQIGDGIQL 1279

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRE 1031
            I+GCNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    E   E +L  +E+  I+E
Sbjct: 1280 ILGCNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLFKQEEEEKEEELNLEEHRLIQE 1339

Query: 1032 TVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             V Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 1340 MVAYSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKN 1390


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  226 bits (575), Expect = 2e-61
 Identities = 117/256 (45%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFN+          
Sbjct: 1021 HEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNRKITVQPIPQA 1080

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 1081 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGADS 1137

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + VA    +  + R VKNMLYNM V +EIPG
Sbjct: 1138 ------RRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRIEIPG 1191

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +K+K G ++I E
Sbjct: 1192 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISE 1251

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1252 HYFRIPYCYSFEMQIG 1267



 Score =  112 bits (280), Expect = 1e-22
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIG 869
            P   + E  F   F     K   KQKIK          F  P    F   + DGI +I+G
Sbjct: 1216 PKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILG 1275

Query: 870  CNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRETVF 1040
            CNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    E   E +L  +E+  I+E V 
Sbjct: 1276 CNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLQQEEEEKEEELNLEEHRLIQEMVA 1335

Query: 1041 YNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            Y+T      F ++   LIQ LK  G+I + P+ +  KN++ C+LDIKN
Sbjct: 1336 YSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKN 1383


>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  224 bits (572), Expect = 5e-61
 Identities = 121/265 (45%), Positives = 158/265 (59%), Gaps = 1/265 (0%)
 Frame = +1

Query: 55   LLDH*MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKT 231
            L D   N  H W HN + + P    C+ CKR +++RARIHCP CL+T CNLCGPYY    
Sbjct: 919  LPDEQFNCAHNWVHNGEILVPKAIKCSFCKRDSLKRARIHCPLCLLTACNLCGPYYLK-- 976

Query: 232  XXXXXXXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQD 411
                           P R+IQEQ  YI W + EIER+ KE+ +YK   E L  EK L++D
Sbjct: 977  -IEVPVDPAPSTPLNPRRIIQEQHNYIGWCEAEIERLNKEVKHYKGLYEALLTEKALKKD 1035

Query: 412  FQELYEKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYN 591
            +++L E D         K+GKGIMI + E      E  K +    ++  R RLVKNMLYN
Sbjct: 1036 YEDLKEGDI--------KRGKGIMIQETEDINYLGENEKALIAGAEE--RKRLVKNMLYN 1085

Query: 592  MIVELEIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKL 771
              +E EIP +PKF+VRAILDTGA TCC++E  +PKEA+E + + V  +G+NS Q   KKL
Sbjct: 1086 FDIEFEIPDVPKFKVRAILDTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKL 1145

Query: 772  KNG*IYIGENLFRIPYTYGFQMQLG 846
            K G + IG N FRIP+TY   + +G
Sbjct: 1146 KYGRMMIGMNSFRIPFTYSLPLVIG 1170



 Score =  140 bits (353), Expect = 4e-32
 Identities = 72/145 (49%), Positives = 99/145 (68%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    SF  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1142 KKKLKYGRMMIGMNSFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1201

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  ++ + +EE ++ E+EY+ ++E V  N GESRESFL++ +PLI+ LKEAG+
Sbjct: 1202 LTRISTSPEVTVNS-LEEEEVCEEEYLQVQEMVICNIGESRESFLKRFKPLIEELKEAGY 1260

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H  KN + C LDIKN ++
Sbjct: 1261 IGENPLQHWSKNGVLCQLDIKNPDF 1285


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  223 bits (567), Expect = 3e-60
 Identities = 115/256 (44%), Positives = 158/256 (61%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +  P H  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1021 HEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPIPQA 1080

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 1081 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGADS 1137

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + VA    +  + R V+NMLYNM V +EIPG
Sbjct: 1138 ------RRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVRNMLYNMDVRMEIPG 1191

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+ I DTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +K+K+G ++I E
Sbjct: 1192 IPAFTVKTIHDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKSGKMFINE 1251

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1252 HYFRIPYCYSFEMQIG 1267



 Score =  107 bits (268), Expect = 3e-21
 Identities = 68/171 (39%), Positives = 96/171 (56%), Gaps = 6/171 (3%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQKIK    ++N H+   F  P    F   + DGI +
Sbjct: 1216 PKDALEENSFVVNFSGINSKQQVKQKIKSGKMFINEHY---FRIPYCYSFEMQIGDGIQL 1272

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRE 1031
            I+GCNFI++M GGVR+EGNT+TFYKQ+T+INT  AA +    E   E +L   E+  I+E
Sbjct: 1273 ILGCNFIRSMYGGVRLEGNTITFYKQITSINTRLAAPLLKQDEEEKEEELNLQEHRLIQE 1332

Query: 1032 TVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             V Y+T  S   F ++   +IQ LK  G+I + P+ +    ++ C+LDIKN
Sbjct: 1333 MVAYSTERSFIHFQQKFAGIIQELKAQGYIGEEPMKYWTIKQVVCHLDIKN 1383


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  222 bits (565), Expect = 5e-60
 Identities = 118/265 (44%), Positives = 159/265 (60%), Gaps = 1/265 (0%)
 Frame = +1

Query: 55   LLDH*MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKT 231
            L D   N  H W HN + +      C+ C+R++++RARIHCP CL+T CNLCGPYY    
Sbjct: 883  LPDEQFNCAHNWVHNGEILVQKAIKCSFCRRESLKRARIHCPLCLLTACNLCGPYYLK-- 940

Query: 232  XXXXXXXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQD 411
                           P R+IQEQ  YI W + EIER+ KE+ +YK   E L  EK+L++D
Sbjct: 941  -IEVPVDPAPSTPLNPRRIIQEQHNYIGWCEAEIERLNKEVKHYKGLYEALLTEKSLKKD 999

Query: 412  FQELYEKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYN 591
            +++L E D         K+GKG+MI + E      E  K +    ++  R RLVKNMLYN
Sbjct: 1000 YEDLREGDI--------KRGKGVMIQEPEDINYLGENEKVLIAGAEE--RKRLVKNMLYN 1049

Query: 592  MIVELEIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKL 771
              +E EIP +PKF+VRAILDTGA TCC++E  +PKEA+E + + V  +G+NS Q   KKL
Sbjct: 1050 FDIEFEIPDVPKFKVRAILDTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKL 1109

Query: 772  KNG*IYIGENLFRIPYTYGFQMQLG 846
            K G + IG N FRIP+TY   + +G
Sbjct: 1110 KYGRMMIGMNSFRIPFTYSLPLVIG 1134



 Score =  135 bits (339), Expect = 2e-30
 Identities = 71/145 (48%), Positives = 96/145 (66%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    SF  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1106 KKKLKYGRMMIGMNSFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1165

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  S+    EE+   E+EY+ I++ V  N GESRESFL++ +PLI+  +EAG+
Sbjct: 1166 LTKISTSPEVSVNVLEEEVC--EEEYLQIQDMVVCNIGESRESFLKKFKPLIEEFQEAGY 1223

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H +KN + C LDIKN ++
Sbjct: 1224 IGENPLQHWEKNGVLCQLDIKNPDF 1248


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  221 bits (564), Expect = 6e-60
 Identities = 116/256 (45%), Positives = 158/256 (61%), Gaps = 1/256 (0%)
 Frame = +1

Query: 82   HRWQHNDFVKPP-HETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H W+ N  +    +  C  CKR+T QRAR+HC  C IT C +CGP YFNK          
Sbjct: 1013 HEWEENQPIDDSAYVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPIPQA 1072

Query: 259  XXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELYEKDK 438
                F    L+Q+QQ YI+W   EI R+ +E+ +YKQ  +E EL+  L+Q  +EL   D 
Sbjct: 1073 P---FNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGADS 1129

Query: 439  *QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVELEIPG 618
                  +++K KG++I +   +    E  + VA    +  + R VKNMLYNM V +EIPG
Sbjct: 1130 ------RRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRMEIPG 1183

Query: 619  IPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*IYIGE 798
            IP F V+AILDTGA TCCID   +PK+ALE+N+FVV+FSGINS+Q   +K+K G ++I E
Sbjct: 1184 IPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINE 1243

Query: 799  NLFRIPYTYGFQMQLG 846
            + FRIPY Y F+MQ+G
Sbjct: 1244 HYFRIPYCYSFEMQIG 1259



 Score =  116 bits (290), Expect = 5e-24
 Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
 Frame = +3

Query: 690  P*RGIREK*FCGPFQRYKFKTNRKQKIKK---WMNLHWRKSF*NPLHLRFSNAVRDGI*M 860
            P   + E  F   F     K   KQKIK    ++N H+   F  P    F   + DGI +
Sbjct: 1208 PKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINEHY---FRIPYCYSFEMQIGDGIQL 1264

Query: 861  IIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIE---EMDLKEDEYISIRE 1031
            I+GCNFI++M GGVR+EGNTVTFYKQ+T+INT  AA +    E   E +L  DE+  I+E
Sbjct: 1265 ILGCNFIRSMYGGVRLEGNTVTFYKQITSINTRLAAPLLKQDEEEKEEELNLDEHRLIQE 1324

Query: 1032 TVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
             V Y+T      F ++   LIQ LK  G+I + P+ +  KNK+ C+LDIKN
Sbjct: 1325 MVAYSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNKVVCHLDIKN 1375


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  219 bits (558), Expect = 4e-59
 Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 1/260 (0%)
 Frame = +1

Query: 70   MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXX 246
            MN +H W HN D        C+ C+R++++RARIHCP CL+T CNLCGPYY         
Sbjct: 909  MNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLK---IEVP 965

Query: 247  XXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELY 426
                      P R+IQEQ  YI W + EIER+ KE+ +YK   E L +EK+L++D++EL 
Sbjct: 966  VEPAPSTPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELK 1025

Query: 427  EKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVEL 606
            E DK        ++ KGIMI + E      E  K +A   ++  + + VKNMLYN  +E 
Sbjct: 1026 EGDK--------ERRKGIMIQEPEEVNYLGEDEKILAAGTEE--KKKFVKNMLYNFDIEF 1075

Query: 607  EIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*I 786
            EIP + +F+VRAILDTGA TCCI+E  +PKEALE++ + V  +G+NS Q   KKLK G +
Sbjct: 1076 EIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRM 1135

Query: 787  YIGENLFRIPYTYGFQMQLG 846
             IG N FRIP+TY   + +G
Sbjct: 1136 MIGMNTFRIPFTYSLPLVIG 1155



 Score =  139 bits (349), Expect = 1e-31
 Identities = 73/145 (50%), Positives = 98/145 (67%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    +F  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1127 KKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1186

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  S+ +  EE+   E+EY+ ++E V  N GESRESFL++ +PL++ LKEAGF
Sbjct: 1187 LTRISTSPEVSVNSLDEEVC--EEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGF 1244

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H +KN I C LDIKN ++
Sbjct: 1245 IGENPLQHWKKNGILCQLDIKNPDF 1269


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  219 bits (558), Expect = 4e-59
 Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 1/260 (0%)
 Frame = +1

Query: 70   MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXX 246
            MN +H W HN D        C+ C+R++++RARIHCP CL+T CNLCGPYY         
Sbjct: 909  MNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLK---IEVP 965

Query: 247  XXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELY 426
                      P R+IQEQ  YI W + EIER+ KE+ +YK   E L +EK+L++D++EL 
Sbjct: 966  VEPAPSTPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELK 1025

Query: 427  EKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVEL 606
            E DK        ++ KGIMI + E      E  K +A   ++  + + VKNMLYN  +E 
Sbjct: 1026 EGDK--------ERRKGIMIQEPEEVNYLGEDEKILAAGTEE--KKKFVKNMLYNFDIEF 1075

Query: 607  EIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*I 786
            EIP + +F+VRAILDTGA TCCI+E  +PKEALE++ + V  +G+NS Q   KKLK G +
Sbjct: 1076 EIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRM 1135

Query: 787  YIGENLFRIPYTYGFQMQLG 846
             IG N FRIP+TY   + +G
Sbjct: 1136 MIGMNTFRIPFTYSLPLVIG 1155



 Score =  139 bits (349), Expect = 1e-31
 Identities = 73/145 (50%), Positives = 98/145 (67%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    +F  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1127 KKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1186

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  S+ +  EE+   E+EY+ ++E V  N GESRESFL++ +PL++ LKEAGF
Sbjct: 1187 LTRISTSPEVSVNSLDEEVC--EEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGF 1244

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H +KN I C LDIKN ++
Sbjct: 1245 IGENPLQHWKKNGILCQLDIKNPDF 1269


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
 gb|AEF56561.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  219 bits (558), Expect = 4e-59
 Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 1/260 (0%)
 Frame = +1

Query: 70   MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXX 246
            MN +H W HN D        C+ C+R++++RARIHCP CL+T CNLCGPYY         
Sbjct: 909  MNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLK---IEVP 965

Query: 247  XXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELY 426
                      P R+IQEQ  YI W + EIER+ KE+ +YK   E L +EK+L++D++EL 
Sbjct: 966  VEPAPSTPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELK 1025

Query: 427  EKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVEL 606
            E DK        ++ KGIMI + E      E  K +A   ++  + + VKNMLYN  +E 
Sbjct: 1026 EGDK--------ERRKGIMIQEPEEVNYLGEDEKILAAGTEE--KKKFVKNMLYNFDIEF 1075

Query: 607  EIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*I 786
            EIP + +F+VRAILDTGA TCCI+E  +PKEALE++ + V  +G+NS Q   KKLK G +
Sbjct: 1076 EIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRM 1135

Query: 787  YIGENLFRIPYTYGFQMQLG 846
             IG N FRIP+TY   + +G
Sbjct: 1136 MIGMNTFRIPFTYSLPLVIG 1155



 Score =  137 bits (345), Expect = 4e-31
 Identities = 72/145 (49%), Positives = 98/145 (67%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    +F  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1127 KKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1186

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  S+ +  EE+   E+EY+ ++E V  N GESR+SFL++ +PL++ LKEAGF
Sbjct: 1187 LTRISTSPEVSVNSLDEEVC--EEEYLQVQEMVICNIGESRKSFLKKFRPLLEELKEAGF 1244

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H +KN I C LDIKN ++
Sbjct: 1245 IGENPLQHWKKNGILCQLDIKNPDF 1269


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
 gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
          Length = 1892

 Score =  162 bits (411), Expect(2) = 2e-58
 Identities = 100/269 (37%), Positives = 151/269 (56%), Gaps = 18/269 (6%)
 Frame = +1

Query: 82   HRWQHNDFVKPPH-ETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXXXXXX 258
            H WQ N  V     E C+ CK++T +R R+HCP+C IT C LC   Y             
Sbjct: 944  HEWQMNQEVATVELEKCSFCKQETRRRMRLHCPKCRITSCVLCSSNYCG----IAIKPEP 999

Query: 259  XXXXFFPHR-LIQEQQYYISWYQGEIERMTKEINYYKQKVEELELE-------KNLQQDF 414
                FF  + L+ +QQ YI++   EI+++ +++   ++K+ E E +       + L+++ 
Sbjct: 1000 VQTSFFNEKSLLTQQQEYIAYQTAEIKKLQEQLKQTEEKLAEAERKIRGYENMEVLEKER 1059

Query: 415  QELYEKDK*QEINEKQKKGKGIMIHDEE---------AHVLFHE*IKTVAEEQQKQARPR 567
            +E+  KD  ++I+E+ KK     +  E+         AH+     +   + E  ++ R  
Sbjct: 1060 KEMALKDMQRKIDEEIKKAAMQELPTEKELWEQREGKAHIAGA--VIAASTETGREERRP 1117

Query: 568  LVKNMLYNMIVELEIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINS 747
            +  NMLYNM VE++IP +P+F V+AILDTGA +CCI    IPK A+E N F V F GINS
Sbjct: 1118 VKGNMLYNMDVEIDIPSVPRFTVKAILDTGATSCCISMDKIPKAAIEPNTFEVTFRGINS 1177

Query: 748  RQTANKKLKNG*IYIGENLFRIPYTYGFQ 834
             Q +NKKLK G + IG ++FRIPYTY F+
Sbjct: 1178 VQKSNKKLKYGQMRIGGHMFRIPYTYCFE 1206



 Score = 94.0 bits (232), Expect(2) = 2e-58
 Identities = 49/113 (43%), Positives = 64/113 (56%)
 Frame = +3

Query: 846  DGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQLTTINTTPAASIAAAIEEMDLKEDEYISI 1025
            D +  ++GCNFI+ M GGVR+EG  VTFYK +TTI T   A I    +E D  E E   I
Sbjct: 1212 DDVQYVLGCNFIRNMHGGVRLEGTEVTFYKNITTIQTRLMAPIVEEDDEDDEVEQETNWI 1271

Query: 1026 RETVFYNTGESRESFLRQCQPLIQRLKEAGFIRDNPL*HCQKNKIACYLDIKN 1184
            R           E       PL++ LK+ G+I +NP+ H  +NK+ CYLDIKN
Sbjct: 1272 RTMASSTMDAPYEKLRSSFGPLMKELKDQGYIGENPMKHWARNKVLCYLDIKN 1324


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  217 bits (553), Expect = 2e-58
 Identities = 116/260 (44%), Positives = 159/260 (61%), Gaps = 1/260 (0%)
 Frame = +1

Query: 70   MNYLHRWQHN-DFVKPPHETCTCCKRQTMQRARIHCPECLITICNLCGPYYFNKTXXXXX 246
            MN +H W HN D        C+ C+R++++RARIHCP CL+T CNLCGPYY         
Sbjct: 909  MNCVHNWIHNGDIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLK---IEVP 965

Query: 247  XXXXXXXXFFPHRLIQEQQYYISWYQGEIERMTKEINYYKQKVEELELEKNLQQDFQELY 426
                      P R+IQEQ  YI W + EIER+ KE+ +YK   E L +EK+L++D++EL 
Sbjct: 966  VEPAPSTPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELK 1025

Query: 427  EKDK*QEINEKQKKGKGIMIHDEEAHVLFHE*IKTVAEEQQKQARPRLVKNMLYNMIVEL 606
            E DK        ++ KGI+I + E      E  K +A   ++  + + VKNMLYN  +E 
Sbjct: 1026 EGDK--------ERRKGILIQEPEEVNYLGEDEKILAAGTEE--KKKFVKNMLYNFDIES 1075

Query: 607  EIPGIPKFQVRAILDTGAMTCCIDEALIPKEALEKNNFVVHFSGINSRQTANKKLKNG*I 786
            EIP + +F+VRAILDTGA TCCI+E  +PKEALE++ + V  +G+NS Q   KKLK G +
Sbjct: 1076 EIPDVSRFRVRAILDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRM 1135

Query: 787  YIGENLFRIPYTYGFQMQLG 846
             IG N FRIP+TY   + +G
Sbjct: 1136 MIGMNTFRIPFTYSLPLVIG 1155



 Score =  139 bits (349), Expect = 1e-31
 Identities = 73/145 (50%), Positives = 98/145 (67%)
 Frame = +3

Query: 759  KQKIKKWMNLHWRKSF*NPLHLRFSNAVRDGI*MIIGCNFIKAMQGGVRIEGNTVTFYKQ 938
            K+K+K    +    +F  P        + D I MI+GCNFI+AM GGVRIEGN VTFYK 
Sbjct: 1127 KKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCNFIRAMYGGVRIEGNEVTFYKN 1186

Query: 939  LTTINTTPAASIAAAIEEMDLKEDEYISIRETVFYNTGESRESFLRQCQPLIQRLKEAGF 1118
            LT I+T+P  S+ +  EE+   E+EY+ ++E V  N GESRESFL++ +PL++ LKEAGF
Sbjct: 1187 LTRISTSPEVSVNSLDEEVC--EEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGF 1244

Query: 1119 IRDNPL*HCQKNKIACYLDIKNLEY 1193
            I +NPL H +KN I C LDIKN ++
Sbjct: 1245 IGENPLQHWKKNGILCQLDIKNPDF 1269