BLASTX nr result
ID: Cheilocostus21_contig00004741
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00004741
(4660 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHA12956.1| RNA polymerase alpha subunit (plastid) [Monocostu... 644 0.0
gb|AHA13042.1| RNA polymerase alpha subunit (plastid) [Costus pu... 628 0.0
ref|YP_007475651.1| RNA polymerase alpha subunit [Heliconia coll... 611 0.0
gb|ABU85470.1| RNA polymerase alpha subunit, partial (chloroplas... 606 0.0
ref|YP_008854457.1| RNA polymerase alpha subunit [Musa textilis]... 605 0.0
ref|YP_009420605.1| RNA polymerase alpha subunit (chloroplast) [... 604 0.0
ref|YP_009415250.1| RNA polymerase alpha subunit (chloroplast) [... 604 0.0
gb|AHA12787.1| RNA polymerase alpha subunit (plastid) [Canna ind... 600 0.0
gb|ANO45673.1| RNA polymerase alpha subunit (chloroplast) [Peter... 592 0.0
gb|AGE93401.1| RNA polymerase alpha subunit (plastid) [Alpinia z... 590 0.0
ref|YP_009341990.1| RNA polymerase alpha subunit (chloroplast) [... 590 0.0
ref|YP_009429010.1| RNA polymerase alpha subunit (chloroplast) [... 590 0.0
gb|AHA12870.1| RNA polymerase alpha subunit (plastid) [Maranta l... 588 0.0
gb|AEX94409.1| RNA polymerase alpha subunit (chloroplast) [Maian... 588 0.0
gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Dorya... 587 0.0
ref|YP_009459084.1| RNA polymerase alpha subunit (chloroplast) [... 587 0.0
gb|ANO45551.1| RNA polymerase alpha subunit (chloroplast) [Ripog... 587 0.0
ref|YP_009334522.1| RNA polymerase alpha subunit (chloroplast) [... 586 0.0
ref|YP_009432335.1| RNA polymerase alpha subunit (chloroplast) [... 586 0.0
ref|YP_009431250.1| RNA polymerase alpha subunit (chloroplast) [... 585 0.0
>gb|AHA12956.1| RNA polymerase alpha subunit (plastid) [Monocostus uniflorus]
Length = 341
Score = 644 bits (1662), Expect = 0.0
Identities = 325/340 (95%), Positives = 325/340 (95%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT
Sbjct: 1 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD
Sbjct: 61 CITCAKSEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II PRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP
Sbjct: 121 IISPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 180
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 181 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENIN 240
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 241 FKENQNRFTLPLFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 300
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS
Sbjct: 301 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 340
>gb|AHA13042.1| RNA polymerase alpha subunit (plastid) [Costus pulverulentus]
Length = 341
Score = 628 bits (1620), Expect = 0.0
Identities = 318/340 (93%), Positives = 321/340 (94%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRAL GEMEGT
Sbjct: 1 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALFGEMEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EKV HEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD
Sbjct: 61 CITCAKSEKVLHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II PRSVEIVDTTQHIANLTEPIDLCIGLQIR+NRGYRTNTKPTMNSQDGSYPIDAVSMP
Sbjct: 121 IISPRSVEIVDTTQHIANLTEPIDLCIGLQIRKNRGYRTNTKPTMNSQDGSYPIDAVSMP 180
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSI+SYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 181 VRNMNHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENIN 240
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFT PLFTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNI+TLLDL
Sbjct: 241 FKENKNRFTPPLFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIYTLLDL 300
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS
Sbjct: 301 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 340
>ref|YP_007475651.1| RNA polymerase alpha subunit [Heliconia collinsiana]
gb|AGE92715.1| RNA polymerase alpha subunit (plastid) [Heliconia collinsiana]
Length = 339
Score = 611 bits (1575), Expect = 0.0
Identities = 313/340 (92%), Positives = 315/340 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYRT K T NSQDG YPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRT--KSTTNSQDGCYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPLFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
L KSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS
Sbjct: 299 LGKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 338
>gb|ABU85470.1| RNA polymerase alpha subunit, partial (chloroplast) [Musa acuminata]
emb|CCW72408.1| rpoA (chloroplast) [Musa acuminata subsp. malaccensis]
Length = 339
Score = 606 bits (1563), Expect = 0.0
Identities = 307/339 (90%), Positives = 315/339 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT A EKVPHEYSTI+GIEESVHEILLNLKEIVLRSNIYGVRDASIC RGPKYVTAQD
Sbjct: 61 CITRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYRT KPT NSQ+GSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRT--KPTTNSQNGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKF 3933
L+KSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKN+F
Sbjct: 299 LNKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNQF 337
>ref|YP_008854457.1| RNA polymerase alpha subunit [Musa textilis]
ref|YP_009180403.1| RNA polymerase alpha subunit (chloroplast) [Musa balbisiana]
gb|AHA12546.1| RNA polymerase alpha subunit (plastid) [Musa textilis]
gb|ALL97071.1| RNA polymerase alpha subunit (chloroplast) [Musa balbisiana]
Length = 337
Score = 605 bits (1559), Expect = 0.0
Identities = 306/339 (90%), Positives = 315/339 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT A EKVPHEYSTI+GIEESVHEILLNLKEIVLRSNIYGVRDASIC RGPKYVTAQD
Sbjct: 61 CITRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYRT KPT NS++GSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRT--KPTTNSKNGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKF 3933
L+KSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKN+F
Sbjct: 299 LNKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNQF 337
>ref|YP_009420605.1| RNA polymerase alpha subunit (chloroplast) [Musa itinerans]
gb|ASO76293.1| RNA polymerase alpha subunit (chloroplast) [Musa itinerans]
Length = 339
Score = 604 bits (1558), Expect = 0.0
Identities = 306/340 (90%), Positives = 315/340 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT A EKVPHEYSTI+GIEESVHEILLN KEIVLRSNIYGVRDASIC RGPKYVTAQD
Sbjct: 61 CITRANSEKVPHEYSTIIGIEESVHEILLNFKEIVLRSNIYGVRDASICARGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYRT KPT NSQ+GSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRT--KPTTNSQNGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
L+KSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKN+FS
Sbjct: 299 LNKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNQFS 338
>ref|YP_009415250.1| RNA polymerase alpha subunit (chloroplast) [Musella lasiocarpa]
gb|ASL69896.1| RNA polymerase alpha subunit (chloroplast) [Musella lasiocarpa]
Length = 339
Score = 604 bits (1557), Expect = 0.0
Identities = 307/340 (90%), Positives = 315/340 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRF+LSPLMKGQADTIGIAMRRALLGEMEGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTI+GIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPK VTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKNVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYRT KPT NSQ+GSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRT--KPTTNSQNGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLP+FTFQDGLTNLKKNKKEIPL CIFIDQSEL SRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPIFTFQDGLTNLKKNKKEIPLNCIFIDQSELTSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
L+KSQEDLMRIEYF+IEDVKEI DTLQKHFAIDLPKNKF+
Sbjct: 299 LNKSQEDLMRIEYFQIEDVKEILDTLQKHFAIDLPKNKFA 338
>gb|AHA12787.1| RNA polymerase alpha subunit (plastid) [Canna indica]
Length = 339
Score = 600 bits (1548), Expect = 0.0
Identities = 307/339 (90%), Positives = 314/339 (92%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADT+GIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTVGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPID CI LQIRR+RGYRT KPT NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDFCIELQIRRDRGYRT--KPTTNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRNTNHSIHSYGNG+EK+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNTNHSIHSYGNGDEKREILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
+FTLP FTFQD LTNLKKNKKEI LKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNKFTLPPFTFQDRLTNLKKNKKEILLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKF 3933
LSKSQEDLMRIEYFR+EDVKEISDTLQKHFAIDLPKNKF
Sbjct: 299 LSKSQEDLMRIEYFRMEDVKEISDTLQKHFAIDLPKNKF 337
>gb|ANO45673.1| RNA polymerase alpha subunit (chloroplast) [Petermannia cirrosa]
Length = 339
Score = 592 bits (1525), Expect = 0.0
Identities = 298/340 (87%), Positives = 311/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQW+C ESR+DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWKCAESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTI+GIEESVHEIL NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIIGIEESVHEILRNLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPID CIGLQI+R+RGYR KPT NS+DGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDFCIGLQIKRDRGYRM--KPTNNSEDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFMPFLHAEEGDLN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQD LTNLKKNKK IPLKCIFIDQ ELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 LKENKNRFTLPLFTFQDRLTNLKKNKKGIPLKCIFIDQLELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
L+ SQEDLMRIEYFRIEDVK+ISDTLQKHFAIDLP+NKFS
Sbjct: 299 LNNSQEDLMRIEYFRIEDVKQISDTLQKHFAIDLPRNKFS 338
>gb|AGE93401.1| RNA polymerase alpha subunit (plastid) [Alpinia zerumbet]
Length = 342
Score = 590 bits (1521), Expect = 0.0
Identities = 300/342 (87%), Positives = 312/342 (91%), Gaps = 2/342 (0%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEV STRTLQWRCVESR+DS RLYYGRFIL PLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVVGSTRTLQWRCVESRIDSNRLYYGRFILCPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EKVPHEYSTI+GIEESVHEILLNLKEIVLRSNI+GVRDASICV+GPKYVTAQD
Sbjct: 61 CITCAKSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIHGVRDASICVKGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYR TK T+NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYR--TKLTINSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA--XXXX 3630
VRN NHSIHS+GNG EK+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH
Sbjct: 179 VRNANHSIHSFGNGKEKEEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDIN 238
Query: 3631 XXXXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLL 3810
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELP RTYNCLKRSNIHTLL
Sbjct: 239 LKLKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLL 298
Query: 3811 DLLSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
+LLSKSQEDLMRIEYFRIEDVKEISDTL+KHF IDLPKNKFS
Sbjct: 299 ELLSKSQEDLMRIEYFRIEDVKEISDTLRKHFEIDLPKNKFS 340
>ref|YP_009341990.1| RNA polymerase alpha subunit (chloroplast) [Aletris fauriei]
gb|ALV25598.1| RNA polymerase alpha subunit (chloroplast) [Aletris fauriei]
Length = 339
Score = 590 bits (1520), Expect = 0.0
Identities = 298/340 (87%), Positives = 309/340 (90%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA TRTLQW+CVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGLTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EK+PHEYSTIVGIEES+HEIL+NLKEIVLRSN+YGVRDASICVRGPKYVTAQD
Sbjct: 61 CITCAKSEKIPHEYSTIVGIEESIHEILINLKEIVLRSNLYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQI+R+RGYRT K T N QDGSYPIDAV MP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIKRDRGYRT--KSTNNFQDGSYPIDAVFMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGN+KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNKKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEKDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
+FTLPLF FQDGLTNLKKNKK IPLK IFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FEENKNKFTLPLFIFQDGLTNLKKNKKRIPLKYIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLMRIEYF IEDVK+I DTL KHFAIDLPKNKFS
Sbjct: 299 LSNSQEDLMRIEYFHIEDVKQIVDTLHKHFAIDLPKNKFS 338
>ref|YP_009429010.1| RNA polymerase alpha subunit (chloroplast) [Alpinia oxyphylla]
gb|ASW20472.1| RNA polymerase alpha subunit (chloroplast) [Alpinia oxyphylla]
Length = 346
Score = 590 bits (1520), Expect = 0.0
Identities = 299/342 (87%), Positives = 312/342 (91%), Gaps = 2/342 (0%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREE+ STRTLQWRCVESR+DS RLYYGRFIL PLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEIVGSTRTLQWRCVESRIDSNRLYYGRFILCPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EKVPHEYSTI+GIEESVHEILLNLKEIVLRSNI+GVRDASICV+GPKYVTAQD
Sbjct: 61 CITCAKSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIHGVRDASICVKGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCIGLQIRR+RGYR TK T+NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYR--TKLTINSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA--XXXX 3630
VRN NHSIHS+GNG EK+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH
Sbjct: 179 VRNANHSIHSFGNGKEKEEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDIN 238
Query: 3631 XXXXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLL 3810
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELP RTYNCLKRSNIHTLL
Sbjct: 239 LKLKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLL 298
Query: 3811 DLLSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
+LLSKSQEDLMRIEYFRIEDVKEISDTL+KHF IDLPKNKFS
Sbjct: 299 ELLSKSQEDLMRIEYFRIEDVKEISDTLRKHFEIDLPKNKFS 340
>gb|AHA12870.1| RNA polymerase alpha subunit (plastid) [Maranta leuconeura]
Length = 339
Score = 588 bits (1517), Expect = 0.0
Identities = 302/340 (88%), Positives = 310/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEV STRTLQWRCVESRVDS RLYYGRFILS LMKGQADTIGIAMRRALLGE+E T
Sbjct: 1 MVREEVVGSTRTLQWRCVESRVDSNRLYYGRFILSSLMKGQADTIGIAMRRALLGEIEAT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGIEESV EILLNLKEIVL+SNIYGVRDASICVRGPKYVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVQEILLNLKEIVLKSNIYGVRDASICVRGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEP DLCIGLQI R+ GYRT KPT+NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPTDLCIGLQIGRDCGYRT--KPTINSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNG+EKQEILFLEIWTNGSLTPKEALYEASRNLIDL IPFLHA
Sbjct: 179 VRNANHSIHSYGNGDEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
+FTLPLFTFQ+ LTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNKFTLPLFTFQNRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LSKS+EDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS
Sbjct: 299 LSKSREDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 338
>gb|AEX94409.1| RNA polymerase alpha subunit (chloroplast) [Maianthemum stellatum]
Length = 339
Score = 588 bits (1517), Expect = 0.0
Identities = 299/340 (87%), Positives = 311/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREE+A STRTLQW+CVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK E+VPHEYSTIVGIEESVHEIL+NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSERVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDL IGLQI+R+RGYR N PT NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLRIGLQIKRDRGYRMN--PTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIH 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQ+GLTNLKKNKK IPLKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 FEENKNRFTLPLFTFQNGLTNLKKNKKGIPLKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLM IEYFR EDVK+I DTLQKHFAI+LPKNKFS
Sbjct: 299 LSNSQEDLMGIEYFRTEDVKQILDTLQKHFAINLPKNKFS 338
>gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Doryanthes palmeri]
Length = 336
Score = 587 bits (1514), Expect = 0.0
Identities = 301/340 (88%), Positives = 309/340 (90%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQW+CVESRVDSKRLYY RFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWKCVESRVDSKRLYYSRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGIEESVHEIL+NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDLCI LQI+RNRGYR KPT NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIELQIKRNRGYR--MKPTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHADIHFEE 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
FTLP FTFQDG TNLKKNKK IPLKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 NKNG---FTLPFFTFQDGFTNLKKNKKGIPLKCIFIDQSELPYRTYNCLKRSNIHTLLDL 295
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLMRIEYFRIEDVK+I DTLQKHFAI+LPKNKFS
Sbjct: 296 LSNSQEDLMRIEYFRIEDVKQILDTLQKHFAINLPKNKFS 335
>ref|YP_009459084.1| RNA polymerase alpha subunit (chloroplast) [Amomum krervanh]
ref|YP_009462843.1| RNA polymerase alpha subunit (chloroplast) [Amomum compactum]
gb|AUS83995.1| RNA polymerase alpha subunit (chloroplast) [Amomum krervanh]
gb|AUW35027.1| RNA polymerase alpha subunit (chloroplast) [Amomum compactum]
Length = 342
Score = 587 bits (1514), Expect = 0.0
Identities = 299/342 (87%), Positives = 312/342 (91%), Gaps = 2/342 (0%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEV STRTLQWRCVESR+DS RLYYGRFIL PLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVVGSTRTLQWRCVESRIDSNRLYYGRFILCPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CITCAK EKVPHEYSTIVGIEESVHEILLNLKEIVLRSNI+GVRDASICV+GPKYVTAQD
Sbjct: 61 CITCAKSEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIHGVRDASICVKGPKYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SV+IVDTTQHIANLTEPIDLCIGLQIRR+RGYR TK T+NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVKIVDTTQHIANLTEPIDLCIGLQIRRDRGYR--TKLTINSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA--XXXX 3630
VRN NHSIHS+GNG EK+EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH
Sbjct: 179 VRNANHSIHSFGNGKEKEEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHGEEEDIN 238
Query: 3631 XXXXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLL 3810
RFTLP+FTFQD LTNLKKNKKEIPLKCIFIDQSELP RTYNCLKRSNIHTLL
Sbjct: 239 LKLKENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPYRTYNCLKRSNIHTLL 298
Query: 3811 DLLSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
+LLSKS+EDLMRIEYFRIEDVKEISDTL+KHF IDLPKNKFS
Sbjct: 299 ELLSKSKEDLMRIEYFRIEDVKEISDTLRKHFEIDLPKNKFS 340
>gb|ANO45551.1| RNA polymerase alpha subunit (chloroplast) [Ripogonum album]
Length = 337
Score = 587 bits (1513), Expect = 0.0
Identities = 299/339 (88%), Positives = 309/339 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREEVA STRTLQW+CVESR+DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVAGSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGI+ESVHEIL+NLKEIVLRS +YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIKESVHEILINLKEIVLRSTLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
IILP SVEIVDTTQHIANLTE IDLCIGLQI+R+RGYRT KPT NSQDGSYPIDAVSMP
Sbjct: 121 IILPPSVEIVDTTQHIANLTESIDLCIGLQIKRDRGYRT--KPTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDIN 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQD LTNLKKNKK I L CIFIDQ ELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FKENKNRFTLPLFTFQDRLTNLKKNKKGITLNCIFIDQLELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKF 3933
LS SQEDLMRIEYF IEDVK+I DTLQKHFAIDLPKNKF
Sbjct: 299 LSNSQEDLMRIEYFCIEDVKQILDTLQKHFAIDLPKNKF 337
>ref|YP_009334522.1| RNA polymerase alpha subunit (chloroplast) [Anemarrhena
asphodeloides]
gb|AEX94373.1| RNA polymerase alpha subunit (chloroplast) [Anemarrhena
asphodeloides]
gb|APO11332.1| RNA polymerase alpha subunit (chloroplast) [Anemarrhena
asphodeloides]
Length = 339
Score = 586 bits (1511), Expect = 0.0
Identities = 297/340 (87%), Positives = 311/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREE+A STRTLQW+CVESRVDSKRL+YGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEIAASTRTLQWKCVESRVDSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK EKVPHEYSTIVGIEESVHEIL+NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
IILP SVEIVDTTQHIANLTEPIDL IGLQI+R+RGYR N PT NSQDGSYPIDAVSMP
Sbjct: 121 IILPPSVEIVDTTQHIANLTEPIDLRIGLQIKRDRGYRIN--PTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIH 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
+FTLP FTFQ LTNLKKNKK IPLKCIFIDQ ELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FEENKNKFTLPFFTFQKRLTNLKKNKKGIPLKCIFIDQLELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLMRIEYFR+EDVK+I DTLQKHF+I+LPKNKFS
Sbjct: 299 LSNSQEDLMRIEYFRMEDVKQILDTLQKHFSINLPKNKFS 338
>ref|YP_009432335.1| RNA polymerase alpha subunit (chloroplast) [Polygonatum stenophyllum]
gb|ATB18590.1| RNA polymerase alpha subunit (chloroplast) [Polygonatum stenophyllum]
Length = 342
Score = 586 bits (1511), Expect = 0.0
Identities = 298/340 (87%), Positives = 311/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREE+A STRTLQW+CVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK E+VPHEYSTIVGIEESVHEIL+NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSERVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDL IGLQI+R+RGYR N PT NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLRIGLQIKRDRGYRMN--PTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIH 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQ+ LTNLK+NKK IPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 239 FEENKNRFTLPLFTFQNRLTNLKRNKKGIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLM IEYFR EDVK+I DTLQKHFAI+LPKNKFS
Sbjct: 299 LSNSQEDLMGIEYFRTEDVKQILDTLQKHFAINLPKNKFS 338
>ref|YP_009431250.1| RNA polymerase alpha subunit (chloroplast) [Maianthemum bicolor]
gb|ASW26686.1| RNA polymerase alpha subunit (chloroplast) [Maianthemum bicolor]
Length = 339
Score = 585 bits (1509), Expect = 0.0
Identities = 298/340 (87%), Positives = 310/340 (91%)
Frame = +1
Query: 2917 MVREEVARSTRTLQWRCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 3096
MVREE+A STRTLQW+CVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 3097 CITCAKFEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIYGVRDASICVRGPKYVTAQD 3276
CIT AK E+VPHEYSTIVGIEESVHEIL+NLKEIVLRSN+YGVRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSERVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 3277 IILPRSVEIVDTTQHIANLTEPIDLCIGLQIRRNRGYRTNTKPTMNSQDGSYPIDAVSMP 3456
II P SVEIVDTTQHIANLTEPIDL IGLQI+R+RGYR N PT NSQDGSYPIDAVSMP
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLRIGLQIKRDRGYRMN--PTNNSQDGSYPIDAVSMP 178
Query: 3457 VRNTNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAXXXXXX 3636
VRN NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA
Sbjct: 179 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIH 238
Query: 3637 XXXXXXRFTLPLFTFQDGLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 3816
RFTLPLFTFQ+ LTNLKKNKK IPLKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 FEENKNRFTLPLFTFQNRLTNLKKNKKGIPLKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 3817 LSKSQEDLMRIEYFRIEDVKEISDTLQKHFAIDLPKNKFS 3936
LS SQEDLM IEYFR EDVK+I DTLQKHFAI+LPKNKFS
Sbjct: 299 LSNSQEDLMGIEYFRTEDVKQILDTLQKHFAINLPKNKFS 338