BLASTX nr result

ID: Cheilocostus21_contig00002367 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00002367
         (574 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73076.1| hypothetical protein VITISV_032388 [Vitis vinifera]    60   2e-07
ref|XP_009383009.1| PREDICTED: ethylene-responsive transcription...    57   2e-06

>emb|CAN73076.1| hypothetical protein VITISV_032388 [Vitis vinifera]
          Length = 304

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = -3

Query: 218 SKAYKVDRRHGKRALPPDEAPEKKEAAGDDQSDDIFSPYLNLPSRAEQDASAIVSALAQV 39
           S+AYKVDRRHGKR LP DEA EK++       D IF  Y    +R++QD SA+VSAL QV
Sbjct: 37  SEAYKVDRRHGKRPLPSDEAEEKED------QDHIFPVY---SARSQQDMSAMVSALTQV 87

Query: 38  I 36
           I
Sbjct: 88  I 88


>ref|XP_009383009.1| PREDICTED: ethylene-responsive transcription factor ERF113-like
           [Musa acuminata subsp. malaccensis]
          Length = 256

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = -3

Query: 203 VDRRHGKRALPPDEA-PEKKEAAGDDQSDDIFSPYLNLPSRAEQDASAIVSALAQVIRSG 27
           +DRRHGKR LPPDEA PE+K  AG+     +        +RA+QDASAIVSALA VI S 
Sbjct: 1   MDRRHGKRPLPPDEAAPEEK--AGELSCSPL--------ARADQDASAIVSALAHVIGSC 50

Query: 26  SPV 18
           SPV
Sbjct: 51  SPV 53


Top