BLASTX nr result
ID: Cheilocostus21_contig00002332
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00002332
(1615 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009398392.1| PREDICTED: glycine-rich RNA-binding protein ... 62 1e-08
ref|XP_009389032.1| PREDICTED: glycine-rich RNA-binding protein ... 65 4e-08
ref|XP_009389033.1| PREDICTED: glycine-rich RNA-binding protein ... 65 4e-08
ref|XP_009389035.1| PREDICTED: glycine-rich RNA-binding protein ... 65 4e-08
ref|XP_009397694.1| PREDICTED: glycine-rich RNA-binding protein ... 64 2e-07
ref|XP_009397693.1| PREDICTED: glycine-rich RNA-binding protein ... 64 3e-07
ref|XP_009397690.1| PREDICTED: glycine-rich RNA-binding protein ... 64 3e-07
>ref|XP_009398392.1| PREDICTED: glycine-rich RNA-binding protein RZ1C [Musa acuminata
subsp. malaccensis]
Length = 311
Score = 58.5 bits (140), Expect(2) = 1e-08
Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -2
Query: 1281 RERSYERDGSRGG-SYDRDVXXXXXXXXXXXXXXXXXXXXXXXXXPARYNGSSSFRERPG 1105
RERSYERDG GG +YDR+ PARY+G S+R+RP
Sbjct: 235 RERSYERDGPHGGGTYDRE-GGPRGSGYDRDGPRGGGSDRYGSGGPARYDGGGSYRDRPR 293
Query: 1104 PYDRPSRGGRMP 1069
PYDRPSRGGR P
Sbjct: 294 PYDRPSRGGRPP 305
Score = 31.6 bits (70), Expect(2) = 1e-08
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 1334 AKDRFGPPADRFPGDXXAG 1278
A DR+GPP DRF GD G
Sbjct: 205 ANDRYGPPGDRFSGDRYGG 223
Score = 62.4 bits (150), Expect = 7e-07
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCG LGHWARECP
Sbjct: 113 DGPPPAGRSDECFKCGSLGHWARECP 138
>ref|XP_009389032.1| PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Musa
acuminata subsp. malaccensis]
Length = 341
Score = 54.7 bits (130), Expect(2) = 4e-08
Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 1281 RERSYERDGSRGGS-YDRDVXXXXXXXXXXXXXXXXXXXXXXXXXPARYNGSSSFRERPG 1105
RERSYE+D RGG YDRD PA Y+G SFR RPG
Sbjct: 264 RERSYEKDVPRGGGGYDRDGGSRGGGGYERDGPRGGGSDRYGSGGPACYDGGGSFRNRPG 323
Query: 1104 PYDRPSRGGR 1075
PYDRP+RG R
Sbjct: 324 PYDRPNRGRR 333
Score = 33.5 bits (75), Expect(2) = 4e-08
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 1334 AKDRFGPPADRFPGDXXAGR 1275
A DR+GPP DRF GD GR
Sbjct: 234 ANDRYGPPVDRFSGDRYGGR 253
Score = 64.7 bits (156), Expect = 2e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWARECP
Sbjct: 135 DGPPPAGRSDECFKCGRLGHWARECP 160
>ref|XP_009389033.1| PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X2 [Musa
acuminata subsp. malaccensis]
ref|XP_009389034.1| PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 319
Score = 54.7 bits (130), Expect(2) = 4e-08
Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 1281 RERSYERDGSRGGS-YDRDVXXXXXXXXXXXXXXXXXXXXXXXXXPARYNGSSSFRERPG 1105
RERSYE+D RGG YDRD PA Y+G SFR RPG
Sbjct: 242 RERSYEKDVPRGGGGYDRDGGSRGGGGYERDGPRGGGSDRYGSGGPACYDGGGSFRNRPG 301
Query: 1104 PYDRPSRGGR 1075
PYDRP+RG R
Sbjct: 302 PYDRPNRGRR 311
Score = 33.5 bits (75), Expect(2) = 4e-08
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 1334 AKDRFGPPADRFPGDXXAGR 1275
A DR+GPP DRF GD GR
Sbjct: 212 ANDRYGPPVDRFSGDRYGGR 231
Score = 64.7 bits (156), Expect = 1e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWARECP
Sbjct: 113 DGPPPAGRSDECFKCGRLGHWARECP 138
>ref|XP_009389035.1| PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X3 [Musa
acuminata subsp. malaccensis]
Length = 298
Score = 54.7 bits (130), Expect(2) = 4e-08
Identities = 32/70 (45%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 1281 RERSYERDGSRGGS-YDRDVXXXXXXXXXXXXXXXXXXXXXXXXXPARYNGSSSFRERPG 1105
RERSYE+D RGG YDRD PA Y+G SFR RPG
Sbjct: 221 RERSYEKDVPRGGGGYDRDGGSRGGGGYERDGPRGGGSDRYGSGGPACYDGGGSFRNRPG 280
Query: 1104 PYDRPSRGGR 1075
PYDRP+RG R
Sbjct: 281 PYDRPNRGRR 290
Score = 33.5 bits (75), Expect(2) = 4e-08
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 1334 AKDRFGPPADRFPGDXXAGR 1275
A DR+GPP DRF GD GR
Sbjct: 191 ANDRYGPPVDRFSGDRYGGR 210
Score = 64.7 bits (156), Expect = 1e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWARECP
Sbjct: 92 DGPPPAGRSDECFKCGRLGHWARECP 117
>ref|XP_009397694.1| PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X3
[Musa acuminata subsp. malaccensis]
Length = 277
Score = 63.5 bits (153), Expect = 2e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWAR+CP
Sbjct: 75 DGPPPAGRSDECFKCGRLGHWARDCP 100
>ref|XP_009397693.1| PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X2
[Musa acuminata subsp. malaccensis]
Length = 293
Score = 63.5 bits (153), Expect = 3e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWAR+CP
Sbjct: 113 DGPPPAGRSDECFKCGRLGHWARDCP 138
Score = 57.0 bits (136), Expect(2) = 3e-07
Identities = 32/69 (46%), Positives = 36/69 (52%)
Frame = -2
Query: 1281 RERSYERDGSRGGSYDRDVXXXXXXXXXXXXXXXXXXXXXXXXXPARYNGSSSFRERPGP 1102
RERSY+RDG RGG PARY+GS SFR+RPGP
Sbjct: 234 RERSYDRDGPRGGG-----------------GGGGGSGRYGAGGPARYDGSGSFRDRPGP 276
Query: 1101 YDRPSRGGR 1075
YDRP+RGGR
Sbjct: 277 YDRPTRGGR 285
Score = 28.1 bits (61), Expect(2) = 3e-07
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 1328 DRFGPPADRFPGD 1290
DR+GPP DRF GD
Sbjct: 206 DRYGPPRDRFSGD 218
>ref|XP_009397690.1| PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1
[Musa acuminata subsp. malaccensis]
ref|XP_009397692.1| PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1
[Musa acuminata subsp. malaccensis]
Length = 315
Score = 63.5 bits (153), Expect = 3e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 1613 DGPPPAARSDECFKCGRLGHWARECP 1536
DGPPPA RSDECFKCGRLGHWAR+CP
Sbjct: 113 DGPPPAGRSDECFKCGRLGHWARDCP 138