BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00052597
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   130   5e-29
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   128   1e-28
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   128   1e-28
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   128   1e-28
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap...   128   1e-28

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  130 bits (328), Expect(2) = 5e-29
 Identities = 59/79 (74%), Positives = 70/79 (88%)
 Frame = -3

Query: 238 NVKTWLGKCFSMKDLGEAAYILGIKIYRDRSKKLIGLSQSTYIDKVLKRFSIQESKRGFL 59
           +VKTWLG CFSMKD+GEAAYILGI+IYRDR  K+IGLSQ TYIDKVL RF++ +SK+GF+
Sbjct: 654 SVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFI 713

Query: 58  PMSHGISLEKAQCPATADE 2
           PMSHGI+L K QCP+T DE
Sbjct: 714 PMSHGITLSKTQCPSTHDE 732



 Score = 21.9 bits (45), Expect(2) = 5e-29
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 278 DDILLIGNDNYLVE 237
           DDILL+GND  L++
Sbjct: 640 DDILLLGNDIPLLQ 653


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  128 bits (321), Expect(2) = 1e-28
 Identities = 63/79 (79%), Positives = 71/79 (89%)
 Frame = -3

Query: 238  NVKTWLGKCFSMKDLGEAAYILGIKIYRDRSKKLIGLSQSTYIDKVLKRFSIQESKRGFL 59
            +VKT L   FSMKDLGEAAYILGI+IYRDRSK+LIGLSQSTYIDKVLKRF++Q+SK+GFL
Sbjct: 878  SVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 937

Query: 58   PMSHGISLEKAQCPATADE 2
            PMSHGI+L K QCP T DE
Sbjct: 938  PMSHGINLGKNQCPQTTDE 956



 Score = 23.5 bits (49), Expect(2) = 1e-28
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 278 DDILLIGNDNYLVE 237
           DDILLIGND  ++E
Sbjct: 864 DDILLIGNDISMLE 877


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1050

 Score =  128 bits (321), Expect(2) = 1e-28
 Identities = 63/79 (79%), Positives = 71/79 (89%)
 Frame = -3

Query: 238 NVKTWLGKCFSMKDLGEAAYILGIKIYRDRSKKLIGLSQSTYIDKVLKRFSIQESKRGFL 59
           +VKT L   FSMKDLGEAAYILGI+IYRDRSK+LIGLSQSTYIDKVLKRF++Q+SK+GFL
Sbjct: 741 SVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 800

Query: 58  PMSHGISLEKAQCPATADE 2
           PMSHGI+L K QCP T DE
Sbjct: 801 PMSHGINLGKNQCPQTTDE 819



 Score = 23.1 bits (48), Expect(2) = 1e-28
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 278 DDILLIGNDNYLVE 237
           DDILLIGND  ++E
Sbjct: 727 DDILLIGNDIPMLE 740


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 649

 Score =  128 bits (321), Expect(2) = 1e-28
 Identities = 63/79 (79%), Positives = 71/79 (89%)
 Frame = -3

Query: 238 NVKTWLGKCFSMKDLGEAAYILGIKIYRDRSKKLIGLSQSTYIDKVLKRFSIQESKRGFL 59
           +VKT L   FSMKDLGEAAYILGI+IYRDRSK+LIGLSQSTYIDKVLKRF++Q+SK+GFL
Sbjct: 384 SVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 443

Query: 58  PMSHGISLEKAQCPATADE 2
           PMSHGI+L K QCP T DE
Sbjct: 444 PMSHGINLGKNQCPQTTDE 462



 Score = 23.1 bits (48), Expect(2) = 1e-28
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 278 DDILLIGNDNYLVE 237
           DDILLIGND  ++E
Sbjct: 370 DDILLIGNDIPMLE 383


>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
          Length = 637

 Score =  128 bits (321), Expect(2) = 1e-28
 Identities = 63/79 (79%), Positives = 71/79 (89%)
 Frame = -3

Query: 238 NVKTWLGKCFSMKDLGEAAYILGIKIYRDRSKKLIGLSQSTYIDKVLKRFSIQESKRGFL 59
           +VKT L   FSMKDLGEAAYILGI+IYRDRSK+LIGLSQSTYIDKVLKRF++Q+SK+GFL
Sbjct: 372 SVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 431

Query: 58  PMSHGISLEKAQCPATADE 2
           PMSHGI+L K QCP T DE
Sbjct: 432 PMSHGINLGKNQCPQTTDE 450



 Score = 23.1 bits (48), Expect(2) = 1e-28
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 278 DDILLIGNDNYLVE 237
           DDILLIGND  ++E
Sbjct: 358 DDILLIGNDIPMLE 371