BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00051954
         (586 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF94719.1| retrotransposon protein, putative, unclassified [...    62   9e-08
gb|AAN05341.1| Putative non-LTR retroelement reverse transcripta...    62   9e-08
ref|NP_001173560.1| Os03g0643433 [Oryza sativa Japonica Group] g...    61   2e-07
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    59   6e-07
gb|AAP53939.1| retrotransposon protein, putative, unclassified [...    56   5e-06

>gb|ABF94719.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 581

 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
 Frame = +2

Query: 8   KINTWSYKSLSPGGRIVLLKSIL----FFQCQYT**PCSSLLRVLLRQ*KRFFQISSGGR 175
           K+++W  K LS GGR+VL+ S+L     F   +   P   +L+ L     RFF  S G +
Sbjct: 228 KLSSWKGKCLSVGGRLVLINSVLSSLAMFMLSFFEVP-KGILKKLDYYRSRFFWQSDGHK 286

Query: 176 RNMGKKYH*RRWEDLYYPVEEGGLGFRNMKTMIEAFSEKL*WRFREKNSLWSSFMWKHYI 355
           R    KY   RW  +  P + GGLG +N+    +    K  ++   ++ +W   + K Y+
Sbjct: 287 R----KYRLARWSVICTPKDCGGLGIQNLNVQNKCLLSKWLYKLINEDGVWQKLLRKKYL 342

Query: 356 GNSHPNEVQKHQTDSH 403
                  V+K   DSH
Sbjct: 343 AKKTITLVEKQPGDSH 358


>gb|AAN05341.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 603

 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
 Frame = +2

Query: 8   KINTWSYKSLSPGGRIVLLKSIL----FFQCQYT**PCSSLLRVLLRQ*KRFFQISSGGR 175
           K+++W  K LS GGR+VL+ S+L     F   +   P   +L+ L     RFF  S G +
Sbjct: 228 KLSSWKGKCLSVGGRLVLINSVLSSLAMFMLSFFEVP-KGILKKLDYYRSRFFWQSDGHK 286

Query: 176 RNMGKKYH*RRWEDLYYPVEEGGLGFRNMKTMIEAFSEKL*WRFREKNSLWSSFMWKHYI 355
           R    KY   RW  +  P + GGLG +N+    +    K  ++   ++ +W   + K Y+
Sbjct: 287 R----KYRLARWSVICTPKDCGGLGIQNLNVQNKCLLSKWLYKLINEDGVWQKLLRKKYL 342

Query: 356 GNSHPNEVQKHQTDSH 403
                  V+K   DSH
Sbjct: 343 AKKTITLVEKQPGDSH 358


>ref|NP_001173560.1| Os03g0643433 [Oryza sativa Japonica Group]
           gi|255674738|dbj|BAH92288.1| Os03g0643433 [Oryza sativa
           Japonica Group]
          Length = 721

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
 Frame = +2

Query: 8   KINTWSYKSLSPGGRIVLLKSIL----FFQCQYT**PCSSLLRVLLRQ*KRFFQISSGGR 175
           K+++W  K LS GGR+VL+ S+L     F   +   P   +L+ L     RFF      +
Sbjct: 531 KLSSWKGKHLSVGGRLVLINSVLSSLAMFMLSFFEIP-KGILKKLDYYRSRFFWQCDENK 589

Query: 176 RNMGKKYH*RRWEDLYYPVEEGGLGFRNMKTMIEAFSEKL*WRFREKNSLWSSFMWKHYI 355
               KKY   +W  L  P E GGLG +N++T       K  ++   +  +W + + + Y+
Sbjct: 590 ----KKYRLAKWSVLCSPKECGGLGIQNLETQNRCLLSKWLFQLINEEGVWQTLLRRKYL 645

Query: 356 GNSHPNEVQKHQTDSH 403
            N    +V++   DSH
Sbjct: 646 SNKTITQVERSPGDSH 661


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
 Frame = +2

Query: 8   KINTWSYKSLSPGGRIVLLKSILFFQCQYT**PCSSLLRVLLRQ*--KRFFQISSG---G 172
           +++ W  K+LS  GR+ L K++L         P  S+  +LL Q    R  Q+S     G
Sbjct: 23  RMSGWREKTLSFAGRLTLTKAVLSSM------PVHSMSTILLPQSILNRLDQLSRTFLWG 76

Query: 173 RRNMGKKYH*RRWEDLYYPVEEGGLGFRNMKTMIEAFSEKL*WR-FREKNSLWSSFMWKH 349
                KK H  +W  +  P +EGGLG R  K+M  A   K+ WR  +EKNSLW+  + K 
Sbjct: 77  STAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKK 136

Query: 350 Y 352
           Y
Sbjct: 137 Y 137


>gb|AAP53939.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1652

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
 Frame = +2

Query: 8    KINTWSYKSLSPGGRIVLLKSIL----FFQCQYT**PCSSLLRVLLRQ*KRFFQISSGGR 175
            K+++W  K LS GGR+VL+ S+L     F   +   P   +L+ L     RFF      +
Sbjct: 1490 KLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIP-KGILKKLDYYRSRFFWQCDEHK 1548

Query: 176  RNMGKKYH*RRWEDLYYPVEEGGLGFRNMKTMIEAFSEKL*WRFREKNSLWSSFMWKHYI 355
                KKY   RW  L  P E GGLG +N++   +    K  ++   +  +W   +   Y+
Sbjct: 1549 ----KKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLINEEGVWQDILRNKYL 1604

Query: 356  GNSHPNEVQKHQTDSH 403
                  +V+K   DSH
Sbjct: 1605 TKKTITQVEKCPGDSH 1620