BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00051828
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    47   5e-09
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    47   5e-09
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    42   3e-08
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    42   3e-08
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    40   8e-07

>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 47.0 bits (110), Expect(2) = 5e-09
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = +1

Query: 10  FYFDRRFLDIPDVDKVIGTAWHQHQSGMPMYQICARIQNCRVALLKLKGTHNMNSRKTIQ 189
           F FD R +DIP   +++ T+W  +++      I  RI +CR A+ +LK   N+NS + I+
Sbjct: 621 FRFDNRLIDIPTFKRIVQTSWRTNRNSRST-PITERISSCRQAMARLKHASNLNSEQRIK 679

Query: 190 AIKGKI 207
            ++  +
Sbjct: 680 KLQSSL 685



 Score = 38.1 bits (87), Expect(2) = 5e-09
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 270 LNEAYKQEEVIWQQKSRLQWLQEGDK 347
           L +A+  EE+ W+QKSR QW++EGD+
Sbjct: 707 LAKAFSDEEIYWKQKSRNQWMKEGDQ 732


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 47.0 bits (110), Expect(2) = 5e-09
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = +1

Query: 10  FYFDRRFLDIPDVDKVIGTAWHQHQSGMPMYQICARIQNCRVALLKLKGTHNMNSRKTIQ 189
           F FD R +DIP   +++ T+W  +++      I  RI +CR A+ +LK   N+NS + I+
Sbjct: 395 FRFDNRLIDIPTFKRIVQTSWRTNRNSRST-PITERISSCRQAMARLKHASNLNSEQRIK 453

Query: 190 AIKGKI 207
            ++  +
Sbjct: 454 KLQSSL 459



 Score = 38.1 bits (87), Expect(2) = 5e-09
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 270 LNEAYKQEEVIWQQKSRLQWLQEGDK 347
           L +A+  EE+ W+QKSR QW++EGD+
Sbjct: 481 LAKAFSDEEIYWKQKSRNQWMKEGDQ 506


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 41.6 bits (96), Expect(2) = 3e-08
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 267 ELNEAYKQEEVIWQQKSRLQWLQEGDK 347
           EL  AY+ EE  WQQKSR QW++EGD+
Sbjct: 706 ELTVAYRDEERYWQQKSRNQWMKEGDR 732



 Score = 40.8 bits (94), Expect(2) = 3e-08
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 10  FYFDRRFLDIPDVDKVIGTAWHQHQSGMPMYQICARIQNCRVALLKLKGTHNMNSRKTIQ 189
           F FD+R L++P     +   W++  +G   + +  +++ CR A+ KLK   N+NSR  I 
Sbjct: 621 FRFDKRLLEVPHFKTYVKAGWNKAINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRIN 679

Query: 190 AIKGKIE 210
            ++  ++
Sbjct: 680 QLQAALD 686


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
           putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 41.6 bits (96), Expect(2) = 3e-08
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 267 ELNEAYKQEEVIWQQKSRLQWLQEGDK 347
           EL  AY+ EE  WQQKSR QW++EGD+
Sbjct: 686 ELTVAYRDEERYWQQKSRNQWMKEGDR 712



 Score = 40.8 bits (94), Expect(2) = 3e-08
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 10  FYFDRRFLDIPDVDKVIGTAWHQHQSGMPMYQICARIQNCRVALLKLKGTHNMNSRKTIQ 189
           F FD+R L++P     +   W++  +G   + +  +++ CR A+ KLK   N+NSR  I 
Sbjct: 601 FRFDKRLLEVPHFKTYVKAGWNKAINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRIN 659

Query: 190 AIKGKIE 210
            ++  ++
Sbjct: 660 QLQAALD 666


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 39.7 bits (91), Expect(2) = 8e-07
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 10  FYFDRRFLDIPDVDKVIGTAWHQHQSGMPMYQICARIQNCRVALLKLKGTHNMNSRKTIQ 189
           F FD+R  + P+V + I  AW+  Q    +  +  ++++CR AL + K  +N+NS   I 
Sbjct: 242 FRFDKRLFNQPNVKETIVQAWNGSQRNENLL-VLDKLKHCRSALSRWKKENNINSSTRIT 300

Query: 190 AIKGKIEAMQDLG 228
             +  +E  Q  G
Sbjct: 301 QARAALELEQSSG 313



 Score = 38.1 bits (87), Expect(2) = 8e-07
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 SATNELNEAYKQEEVIWQQKSRLQWLQEGDK 347
           S  N+L +A   EEV W QKSR +W+  GDK
Sbjct: 322 SLKNDLCKANHDEEVFWSQKSRAKWMHSGDK 352