BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00050244
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...   115   5e-24
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   112   4e-23
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   108   6e-22
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   101   7e-20
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    97   1e-18

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
 Frame = +1

Query: 49   VHHLMKIKSDHRPLFIRTEMG-EITLMRRPFRFLDAWLTHHDFGNLVANNWKLGGSLTKS 225
            V HL    SDH P++I+ E       +RRPFRF  AWLTH  F +L+  +W   G    +
Sbjct: 627  VTHLPFFASDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVA 686

Query: 226  IKQFSEAAKGWNKGVFGHITQRKNRVLARLNRLQAPLEVRPNRFLLKLENELRSELELIL 405
            +       K WN+ VFG + +RK  ++  +  +Q  LE+     LL  E EL  E +++L
Sbjct: 687  LAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVL 746

Query: 406  DQEESLWSQKARCEWLALEDKNTKFFHS 489
            +QEE LW QK+R +W+ L D+NTK+FH+
Sbjct: 747  EQEEVLWFQKSREKWVELGDRNTKYFHT 774


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  112 bits (279), Expect = 4e-23
 Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
 Frame = +1

Query: 49  VHHLMKIKSDHRPLFIRTE-MGEITLMRRPFRFLDAWLTHHDFGNLVANNWKLGGSLTKS 225
           V +L K +SDH P+ I T     +  + +PFRF  AWL H  F   V  NW     +   
Sbjct: 216 VRNLPKSQSDHCPILISTSGFAPVPRIIKPFRFQAAWLNHQVFCEFVRKNWNADAPIVPF 275

Query: 226 IKQFSEAAKGWNKGVFGHITQRKNRVLARLNRLQAPLEVRPNRFLLKLENELRSELELIL 405
           +K F++    WNK  F +I ++K+ + AR++ +QA L       L+KLE +LR E++++L
Sbjct: 276 LKSFADKLNKWNKEEFYNIFRKKSELWARISGVQALLSTGRQNHLIKLEAKLRREMDIVL 335

Query: 406 DQEESLWSQKARCEWLALEDKNTKFFH 486
           D EE+LW QK+R E +   D+NT++FH
Sbjct: 336 DDEETLWFQKSRMEAICDGDRNTRYFH 362


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score =  108 bits (269), Expect = 6e-22
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
 Frame = +1

Query: 49  VHHLMKIKSDHRPLFIRTEMGEITLMRRPFRFLDAWLTHHDFGNLVANNWKLGG-SLTKS 225
           V  L ++ SDH PL +R     +T   RPFRF  AW+ H+D+GN+V  +W     + T S
Sbjct: 213 VEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTAS 272

Query: 226 IKQFSEAAKGWNKGVFGHITQRKNRVLARLNRLQAPLEVRPNRFLLKLENELRSELELIL 405
           + +  E +  +N  VFG+I QRK+RV  RL  +Q+ LE   +     LE EL+ E   IL
Sbjct: 273 LIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHIL 332

Query: 406 DQEESLWSQKARCEWLALEDKNTKFFHS 489
            QEE LW QK+R +W+ L DKNT FFH+
Sbjct: 333 FQEEMLWYQKSREQWVKLGDKNTAFFHA 360


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  101 bits (251), Expect = 7e-20
 Identities = 54/121 (44%), Positives = 74/121 (61%)
 Frame = +1

Query: 127 RRPFRFLDAWLTHHDFGNLVANNWKLGGSLTKSIKQFSEAAKGWNKGVFGHITQRKNRVL 306
           RRPFRF  AWL+H  F  L+  +W  G S   ++ +     K WNK VFG+I  RK +V+
Sbjct: 52  RRPFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKVV 111

Query: 307 ARLNRLQAPLEVRPNRFLLKLENELRSELELILDQEESLWSQKARCEWLALEDKNTKFFH 486
           + L  +Q  LEV     LL  E+ L  E +++L QEE+LW QK+R + LAL D+NT FFH
Sbjct: 112 SDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNTTFFH 171

Query: 487 S 489
           +
Sbjct: 172 T 172


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
 Frame = +1

Query: 31  TKVVV*VHHLMKIKSDHRPLFIRTEMGEITLMRRPFRFLDAWLTHHDFGNLVANNW-KLG 207
           TKV+    HL +  SDH PL I       +    PFR  + W  H DF N++   W    
Sbjct: 214 TKVI----HLPRTFSDHCPLLILFNENPRS-ESFPFRCKEVWAYHPDFTNVIEETWGSHH 268

Query: 208 GSLTKSIKQFSEAAKGWNKGVFGHITQRKNRVLARLNRLQAPLEVRPNRFLLKLENELRS 387
            S   +   F  + K W+K VFG I Q+K R+LARL  +Q  L + P+ FL KLE +L  
Sbjct: 269 NSYVAARDLFLSSVKSWSKYVFGSIFQKKKRILARLGGIQKSLSIHPSVFLSKLEIDLLV 328

Query: 388 ELELILDQEESLWSQKARCEWLALEDKNTKFFHS 489
           EL  +  QE   W+QKA  +   L D NTK+FH+
Sbjct: 329 ELNELSKQERVFWAQKAGIDRAKLGDMNTKYFHT 362