BLASTX nr result

ID: Cephaelis21_contig00047884 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00047884
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    62   5e-08
ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containin...    62   6e-08
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    59   4e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    57   2e-06

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +2

Query: 257 KEGGLGLIDTRVRNKSLLVRRLRDICQRKE-SLWIKWIHMEQLKGRSLWEIPINTYCSWN 433
           KEGGLG+   +  NK  L++ + ++C   + S+W  WI    L+GR+ W I     CSW 
Sbjct: 157 KEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWA 216

Query: 434 WKKLLKIRSQVTP 472
           W K+LK+RS   P
Sbjct: 217 WGKILKLRSLAWP 229


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 248  CSMKEGGLGLIDTRVRNKSLLVRRLRDICQRKESLWIKWIHMEQLKGRSLWEI-PINTYC 424
            C  K+GGLGL      N   +++ +  +    +SLW+KW  M  LK  S W + P ++  
Sbjct: 783  CKPKQGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLKPNSSLG 842

Query: 425  SWNWKKLLKIRSQVTPFIR 481
            SW WKK+LK R    PF R
Sbjct: 843  SWMWKKMLKYRETAKPFSR 861


>ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containing protein 66-like
           [Glycine max]
          Length = 1089

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +2

Query: 242 KSCSMK-EGGLGLIDTRVRNKSLLVRRLRDICQRKESLWIKWIHMEQLKGRSLWEIPINT 418
           K C+ K +GGL +I+ +  NK+ L++ L ++ ++++SLWI+W+H    +G  +  +PI  
Sbjct: 143 KVCAPKNQGGLNVINFQSWNKACLIKLLWNLYKKEDSLWIQWVHTYYTRGEDIMTVPIKA 202

Query: 419 YCSWNWKKLLKIRSQV 466
            CSW  K +LK R +V
Sbjct: 203 SCSWIMKGILKQRVKV 218


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 257 KEGGLGLIDTRVRNKSLLVRRLRDICQRKESLWIKWIHMEQLKGRSLWEI-PINTYCSWN 433
           +EGGLGL      N   +++ +  +    +SLW+KW  M  LK  S W + P ++  SW 
Sbjct: 275 QEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWM 334

Query: 434 WKKLLKIRSQVTPFIR 481
           WKK+LK R    PF R
Sbjct: 335 WKKMLKYRETAKPFSR 350


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 257 KEGGLGLIDTRVRNKSLLVRRLRDICQRKESLWIKWIHMEQLKGRSLWEIPI-NTYCSWN 433
           KEGGLGL   R  NK   ++ +  +   ++SLW+KW  M  LK  S W I   +T  SW 
Sbjct: 591 KEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWI 650

Query: 434 WKKLLKIRSQVTPFIR 481
           W++LLK R     F +
Sbjct: 651 WRRLLKHREVAKSFCK 666


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