BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00044568
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   100   2e-31
gb|AAB48351.1| reverse transcriptase, partial [Arabidopsis thali...    98   9e-31
gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thali...   101   2e-30
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   102   5e-30
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   102   6e-30

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  100 bits (248), Expect(2) = 2e-31
 Identities = 49/90 (54%), Positives = 63/90 (70%)
 Frame = -1

Query: 471  DFRSISLWNVIYKIISKIIAERLKPPLAKCISESQLVFIPGR*ILDNVIIAHEFLHHLNR 292
            D+R ISL    YKIISKI+ +RLK  L   IS+SQ  F+PG+ I DNV++AHE LH L  
Sbjct: 865  DYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKS 924

Query: 291  LKHGNVSYVALKLDMSKAYDRVEWSFITKI 202
             +     YVA+K D+SKAYDRVEW+F+ K+
Sbjct: 925  RRECQSGYVAVKTDISKAYDRVEWNFLEKV 954



 Score = 60.8 bits (146), Expect(2) = 2e-31
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = -3

Query: 196  MMQKMGFDPIFIKWILSCLKSVSFSFLVNGSPYNLVKPSKEIRRGILFPLICFFIVIEGL 17
            +M ++GF P ++KWI++C+ SVS+  L+NGSPY  + PS+ IR+G       F    E L
Sbjct: 954  VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013

Query: 16   SNLIK 2
            SN+++
Sbjct: 1014 SNMLR 1018


>gb|AAB48351.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 98.2 bits (243), Expect(2) = 9e-31
 Identities = 49/87 (56%), Positives = 63/87 (72%)
 Frame = -1

Query: 471 DFRSISLWNVIYKIISKIIAERLKPPLAKCISESQLVFIPGR*ILDNVIIAHEFLHHLNR 292
           DFR I+L NV YKIISK + +RLK  L   +SE+Q  FI GR I+DNVIIAHE LH L +
Sbjct: 59  DFRPIALCNVSYKIISKTLVDRLKQHLPFIVSENQAAFIGGRNIMDNVIIAHEMLHSLKK 118

Query: 291 LKHGNVSYVALKLDMSKAYDRVEWSFI 211
            K    SY+ +K D++KAYDR+EW+F+
Sbjct: 119 RKLWATSYMTVKTDITKAYDRLEWAFL 145



 Score = 60.5 bits (145), Expect(2) = 9e-31
 Identities = 26/49 (53%), Positives = 37/49 (75%)
 Frame = -3

Query: 193 MQKMGFDPIFIKWILSCLKSVSFSFLVNGSPYNLVKPSKEIRRGILFPL 47
           MQ MGFD ++I W++ C++SVSFS LVN SP  ++KP + IR+G  +PL
Sbjct: 149 MQSMGFDSVWINWVMQCVESVSFSVLVNASPRGMIKPERGIRQG--YPL 195


>gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score =  101 bits (252), Expect(2) = 2e-30
 Identities = 50/90 (55%), Positives = 63/90 (70%)
 Frame = -1

Query: 471 DFRSISLWNVIYKIISKIIAERLKPPLAKCISESQLVFIPGR*ILDNVIIAHEFLHHLNR 292
           D+R ISL    YKIISKI+ +RLK  L   IS+SQ  F+PGR I DNV++AHE LH L  
Sbjct: 59  DYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGRNISDNVLVAHELLHSLKS 118

Query: 291 LKHGNVSYVALKLDMSKAYDRVEWSFITKI 202
            +     YVA+K D+SKAYDRVEW+F+ K+
Sbjct: 119 RRECQSGYVAVKTDISKAYDRVEWNFLEKV 148



 Score = 55.8 bits (133), Expect(2) = 2e-30
 Identities = 24/50 (48%), Positives = 38/50 (76%)
 Frame = -3

Query: 196 MMQKMGFDPIFIKWILSCLKSVSFSFLVNGSPYNLVKPSKEIRRGILFPL 47
           +M ++GF P ++KWI++C+ SVS+  L+NGSPY  + PS+ IR+G  +PL
Sbjct: 148 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQG--YPL 195


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  102 bits (255), Expect(2) = 5e-30
 Identities = 50/87 (57%), Positives = 65/87 (74%)
 Frame = -1

Query: 471  DFRSISLWNVIYKIISKIIAERLKPPLAKCISESQLVFIPGR*ILDNVIIAHEFLHHLNR 292
            D+R I+L NV+YKIISK + ERLK  L   +S+SQ  FIPGR + DNV+IAHE +H L  
Sbjct: 885  DYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKT 944

Query: 291  LKHGNVSYVALKLDMSKAYDRVEWSFI 211
             K  + SY+A+K D+SKAYDRVEW+F+
Sbjct: 945  RKRVSQSYMAVKTDVSKAYDRVEWNFL 971



 Score = 53.1 bits (126), Expect(2) = 5e-30
 Identities = 25/64 (39%), Positives = 40/64 (62%)
 Frame = -3

Query: 193  MQKMGFDPIFIKWILSCLKSVSFSFLVNGSPYNLVKPSKEIRRGILFPLICFFIVIEGLS 14
            M+  GF   +IKWI+  +KSV++S LVNG P+  ++P + IR+G       F +  + L+
Sbjct: 975  MRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILN 1034

Query: 13   NLIK 2
            +LIK
Sbjct: 1035 HLIK 1038


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  102 bits (255), Expect(2) = 6e-30
 Identities = 50/87 (57%), Positives = 65/87 (74%)
 Frame = -1

Query: 471  DFRSISLWNVIYKIISKIIAERLKPPLAKCISESQLVFIPGR*ILDNVIIAHEFLHHLNR 292
            D+R I+L NV+YKIISK + ERLK  L   +S+SQ  FIPGR + DNV+IAHE +H L  
Sbjct: 865  DYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKT 924

Query: 291  LKHGNVSYVALKLDMSKAYDRVEWSFI 211
             K  + SY+A+K D+SKAYDRVEW+F+
Sbjct: 925  RKRVSQSYMAVKTDVSKAYDRVEWNFL 951



 Score = 53.1 bits (126), Expect(2) = 6e-30
 Identities = 25/64 (39%), Positives = 40/64 (62%)
 Frame = -3

Query: 193  MQKMGFDPIFIKWILSCLKSVSFSFLVNGSPYNLVKPSKEIRRGILFPLICFFIVIEGLS 14
            M+  GF   +IKWI+  +KSV++S LVNG P+  ++P + IR+G       F +  + L+
Sbjct: 955  MRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILN 1014

Query: 13   NLIK 2
            +LIK
Sbjct: 1015 HLIK 1018