BLASTX nr result
ID: Cephaelis21_contig00043242
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00043242
(586 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 104 6e-23
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 90 1e-22
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 98 3e-20
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 85 6e-20
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S... 78 1e-19
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 104 bits (259), Expect(2) = 6e-23
Identities = 55/140 (39%), Positives = 81/140 (57%)
Frame = -1
Query: 430 DHSLLVLDTQPTKQKVKQRFTFDQRWTEQIGFEEVVRQAWNDEVAGYPMYKVHLKIKHCR 251
DH +++ TK++ + F FD+R Q +E + QAWN + + K+KHCR
Sbjct: 223 DHRPVLVRLTKTKEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLD-KLKHCR 281
Query: 250 LAILKWKRKVNTNSTRQIKTIKQRMEKMQEEGCNRDWVLWKDLKEKLKKAYDDEEVYWKQ 71
A+ +WK++ N NS+ +I + +E Q G R +++ LK L KA DEEV+W Q
Sbjct: 282 SALSRWKKENNINSSTRITQARAALELEQSSGFPRADLVFS-LKNDLCKANHDEEVFWSQ 340
Query: 70 KSRIQWLQEGDKNTKFFHAS 11
KSR +W+ GDKNT FFHAS
Sbjct: 341 KSRAKWMHSGDKNTSFFHAS 360
Score = 28.5 bits (62), Expect(2) = 6e-23
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 558 WTWGNNRQGEGFVEERLDRFFGSPQWILDCPEARVQHILKQ 436
+TWG + E +++ RLDR FG+ W P + + + K+
Sbjct: 181 FTWGG-KTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKR 220
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 89.7 bits (221), Expect(2) = 1e-22
Identities = 45/149 (30%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Frame = -1
Query: 430 DHSLLVLDTQPTKQKVKQR-----FTFDQRWTEQIGFEEVVRQAWNDEVAGYPMYKVHLK 266
DH ++++ + + V+ R F F+ W E+ F+EVV++AW D AG VH
Sbjct: 470 DHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAW-DVSAGLQGLPVHAS 528
Query: 265 IKHCRLAILKWKRKVNTNSTRQIKTIKQRMEKMQEEGCNRDWVLWKD-LKEKLKKAYDDE 89
+ + W V + +++K +K+ +E + + +RD V+ ++ L+ +L+K
Sbjct: 529 LAGVAAGLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQV 588
Query: 88 EVYWKQKSRIQWLQEGDKNTKFFHASTTQ 2
++YWKQ++ WL +GD+NT FFHAS ++
Sbjct: 589 DIYWKQRAHTNWLNKGDRNTSFFHASCSE 617
Score = 42.4 bits (98), Expect(2) = 1e-22
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 582 DLGFQRRKWTWGNNRQG-EGFVEERLDRFFGSPQWILDCPEARV 454
DLGF+ +TW N+ EG++ ERLDR +P+W P ARV
Sbjct: 418 DLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARV 461
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 97.8 bits (242), Expect(2) = 3e-20
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Frame = -1
Query: 430 DHSLLVLDTQPTKQKVKQRFTFDQRWTEQIGFEEVVRQAWN--DEVAGYPMYKVHLKIKH 257
D +++ TK++ K F FD+R Q +E ++QAWN V G + + ++K
Sbjct: 187 DRRPVLVRLSKTKEEYKGNFRFDKRLFNQPLVKEAIQQAWNGNQRVGGMQVLE---RLKK 243
Query: 256 CRLAILKWKRKVNTNSTRQIKTIKQRMEKMQEEGCNRDWVLWKDLKEKLKKAYDDEEVYW 77
CR A+ +WK++ N+NS I + +E Q G R V++ LK L KA DEE +W
Sbjct: 244 CRSALSRWKQENNSNSLTCISQARAALELEQSSGFPRSKVVFT-LKNDLCKANQDEETFW 302
Query: 76 KQKSRIQWLQEGDKNTKFFHAS 11
QKSR +W+ GDKNT FFHAS
Sbjct: 303 SQKSRAKWMHGGDKNTSFFHAS 324
Score = 26.2 bits (56), Expect(2) = 3e-20
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 558 WTWGNNRQGEGFVEERLDRFFGSPQWILDCPEARVQHILKQ 436
++WG R +++ RLDR FG+ W P + + + K+
Sbjct: 145 FSWGGKRNSL-WIQCRLDRCFGNKNWFRHFPVSNQEFLDKR 184
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 85.1 bits (209), Expect(2) = 6e-20
Identities = 40/143 (27%), Positives = 74/143 (51%)
Frame = -1
Query: 430 DHSLLVLDTQPTKQKVKQRFTFDQRWTEQIGFEEVVRQAWNDEVAGYPMYKVHLKIKHCR 251
DH L+LD+ P + F F+Q WT + +V++++W G M + + C
Sbjct: 828 DHRPLLLDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCG 887
Query: 250 LAILKWKRKVNTNSTRQIKTIKQRMEKMQEEGCNRDWVLWKDLKEKLKKAYDDEEVYWKQ 71
A+ W ++ +N + Q+ + +EK+ + L +++ K + +E+YW Q
Sbjct: 888 KALKMWSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHHQINILTDQVTKLWTQDEMYWHQ 947
Query: 70 KSRIQWLQEGDKNTKFFHASTTQ 2
+SR+ WL+ GD+N+ FFH +T Q
Sbjct: 948 RSRVNWLKLGDQNSSFFHQTTIQ 970
Score = 37.7 bits (86), Expect(2) = 6e-20
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 585 KDLGFQRRKWTWGNNRQGEGFVEERLDRFFGSPQWILDCPEARVQHILK 439
+DL F+ ++W R G F++ERLDR G+ W P ++ H+ K
Sbjct: 776 RDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPK 824
>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
gi|241936686|gb|EES09831.1| hypothetical protein
SORBIDRAFT_05g019526 [Sorghum bicolor]
Length = 1209
Score = 77.8 bits (190), Expect(2) = 1e-19
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Frame = -1
Query: 430 DHSLLVLDTQPTKQKVKQR--FTFDQRWTEQIGFEEVVRQAWNDEVAGYPMYKVHLKIKH 257
DH +VL + + + +QR F ++ W F V+ Q W +++ K++
Sbjct: 487 DHGPIVLQWEAAQGRQRQRRQFRYETMWETHEDFANVISQTWQRGTKATTAHELQSKLRS 546
Query: 256 CRLAILKWKRKVNTNSTRQIKTIKQRMEKMQEEGCNRDWVLWKDLK--EKLKKAYDDEEV 83
+ W+ + +R++K +++ +E MQ + NR +LK E++ + EE+
Sbjct: 547 VSCKLNHWEVRTFGQVSRELKGLRRELEMMQAD-VNRQGPSHVELKIKERIMELNHREEL 605
Query: 82 YWKQKSRIQWLQEGDKNTKFFH 17
WKQ++RIQWL GDKNT FFH
Sbjct: 606 MWKQRARIQWLSAGDKNTHFFH 627
Score = 44.3 bits (103), Expect(2) = 1e-19
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 582 DLGFQRRKWTWGNNRQGEGFVEERLDRFFGSPQWILDCPEARVQHILKQA 433
DLG++ R WT+ G F RLDR +P+W P A+V+HI A
Sbjct: 436 DLGYEGRSWTYEKKVTGGSFCRVRLDRALATPEWSARFPLAKVRHITAAA 485