BLASTX nr result

ID: Cephaelis21_contig00042210 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00042210
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510615.1| transcription factor, putative [Ricinus comm...   117   1e-24
ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-l...   112   3e-23
gb|ADN34129.1| high mobility group family [Cucumis melo subsp. m...   112   4e-23
ref|XP_002307758.1| high mobility group family [Populus trichoca...   109   2e-22
gb|ABK95398.1| unknown [Populus trichocarpa]                          109   2e-22

>ref|XP_002510615.1| transcription factor, putative [Ricinus communis]
           gi|223551316|gb|EEF52802.1| transcription factor,
           putative [Ricinus communis]
          Length = 338

 Score =  117 bits (293), Expect = 1e-24
 Identities = 62/124 (50%), Positives = 75/124 (60%), Gaps = 33/124 (26%)
 Frame = -3

Query: 314 EVSCVFEFAPSTTSASYALRKHYFSLLHHYEQVYFFRLKAPMLQSP-------------- 177
           EV  VF+F+P+TTSAS+ LRKHYF LL+HYEQV+FF+++ PM  S               
Sbjct: 88  EVGSVFKFSPTTTSASFVLRKHYFGLLYHYEQVHFFKVQGPMSSSAAAFPGNSTLFRPEL 147

Query: 176 -------------------GPLSFEAVGTIDGKFDCGYLVSVKLGSEILSGVLYHPDHAG 54
                              G  SF A+GTIDGKFDCGYLVSV++GSE+LSGVLYHPD   
Sbjct: 148 AIVEYSPEVIKHRPEPPSEGSSSFSALGTIDGKFDCGYLVSVRVGSEVLSGVLYHPDQPQ 207

Query: 53  SSSS 42
            S S
Sbjct: 208 HSFS 211


>ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-like [Cucumis sativus]
           gi|449519744|ref|XP_004166894.1| PREDICTED: high
           mobility group B protein 9-like [Cucumis sativus]
          Length = 324

 Score =  112 bits (280), Expect = 3e-23
 Identities = 64/131 (48%), Positives = 75/131 (57%), Gaps = 30/131 (22%)
 Frame = -3

Query: 314 EVSCVFEFAPSTTSASYALRKHYFSLLHHYEQVYFFRLKAPMLQ---------------- 183
           EV  VF+F+P+TTSAS+ LRKHY SLL+HYEQVY F  + P+                  
Sbjct: 86  EVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENEL 145

Query: 182 ------------SPGPLSFEAVGTIDGKFDCGYLVSVKLGSEILSGVLYHPDHAGSSS-- 45
                       SPGP S E  GTIDGKFDCGYLV+VKLGSE+L GVLYHPD    S   
Sbjct: 146 ALVEYTPKTTSFSPGPPS-EVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLR 204

Query: 44  SLTAKPCTPFT 12
            L+     P+T
Sbjct: 205 PLSTNAIVPYT 215


>gb|ADN34129.1| high mobility group family [Cucumis melo subsp. melo]
          Length = 324

 Score =  112 bits (279), Expect = 4e-23
 Identities = 61/130 (46%), Positives = 73/130 (56%), Gaps = 29/130 (22%)
 Frame = -3

Query: 314 EVSCVFEFAPSTTSASYALRKHYFSLLHHYEQVYFFRLKAPMLQSPGPLSF--------- 162
           EV  VF+F+P+TTSAS+ LRKHY SLL+HYEQVY F  + P+     P SF         
Sbjct: 86  EVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENEL 145

Query: 161 ------------------EAVGTIDGKFDCGYLVSVKLGSEILSGVLYHPDHAGSSS--S 42
                             E  GTIDGKFDCGYLV+VKLGSE+L GVLYHP+    S    
Sbjct: 146 ALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRP 205

Query: 41  LTAKPCTPFT 12
           L+     P+T
Sbjct: 206 LSTNAIVPYT 215


>ref|XP_002307758.1| high mobility group family [Populus trichocarpa]
           gi|222857207|gb|EEE94754.1| high mobility group family
           [Populus trichocarpa]
          Length = 329

 Score =  109 bits (273), Expect = 2e-22
 Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 33/125 (26%)
 Frame = -3

Query: 314 EVSCVFEFAPSTTSASYALRKHYFSLLHHYEQVYFFRLKAPMLQ---------------- 183
           EV  VF F+ +TTSAS+ L+KHYFSLL+HYEQV+FF+++ P+                  
Sbjct: 86  EVGSVFCFSATTTSASFVLKKHYFSLLYHYEQVHFFKIQGPVSTPAVAFPLGSPSSKTEL 145

Query: 182 -----SPGPL------------SFEAVGTIDGKFDCGYLVSVKLGSEILSGVLYHPDHAG 54
                SP P+            SF A GTI+GKFDCGYLVSV+LGSE+L GVLYHPD   
Sbjct: 146 AIVEYSPEPIRDCPDPSTESSSSFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQD 205

Query: 53  SSSSL 39
            S+S+
Sbjct: 206 LSNSI 210


>gb|ABK95398.1| unknown [Populus trichocarpa]
          Length = 317

 Score =  109 bits (273), Expect = 2e-22
 Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 33/125 (26%)
 Frame = -3

Query: 314 EVSCVFEFAPSTTSASYALRKHYFSLLHHYEQVYFFRLKAPMLQ---------------- 183
           EV  VF F+ +TTSAS+ L+KHYFSLL+HYEQV+FF+++ P+                  
Sbjct: 74  EVGSVFCFSATTTSASFVLKKHYFSLLYHYEQVHFFKIQGPVSTPAVAFPLGSPSSKTEL 133

Query: 182 -----SPGPL------------SFEAVGTIDGKFDCGYLVSVKLGSEILSGVLYHPDHAG 54
                SP P+            SF A GTI+GKFDCGYLVSV+LGSE+L GVLYHPD   
Sbjct: 134 AIVEYSPEPIRDCPDPSTESSSSFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQD 193

Query: 53  SSSSL 39
            S+S+
Sbjct: 194 LSNSI 198


Top