BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00041771
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    95   5e-18
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    78   7e-13
gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    75   6e-12
emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7...    72   6e-11
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...    69   3e-10

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
 Frame = -2

Query: 401 LVVLMETRISGVKADTVIKKLGFSGSHRVEANGFAGGIWIL*R-DSITVNVLLNHVQYVH 225
           ++ L+ET ISG +A  +  ++GFSG  RVEA GF GGIW+  + + +TV    +H Q++ 
Sbjct: 31  VLALVETHISGDQAQRICDRIGFSGQTRVEAEGFRGGIWLFWKSEEVTVTPYGSHSQHLT 90

Query: 224 MEVCLKVRNERFLFTAIYASP*KKNRMELWKCLNFIAEAVDLPWMLAGDFNAILEADEKS 45
           +E+  ++ ++ +LF+AIYASP    R ELW+ L  I      PW+LAGDFN      E++
Sbjct: 91  VEI-RRIGDDPWLFSAIYASPDSTLRKELWRELEQIKNQYTGPWLLAGDFNETSSLCERN 149

Query: 44  GG-SDNSNKGCAKF 6
           G  S    + C  F
Sbjct: 150 GSESSEMQRRCKDF 163


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 42/134 (31%), Positives = 71/134 (52%)
 Frame = -2

Query: 404 QLVVLMETRISGVKADTVIKKLGFSGSHRVEANGFAGGIWIL*RDSITVNVLLNHVQYVH 225
           +++ L ET+      + V+  LGF   H VE  G +GG+ ++ +DS+ + VL +  + + 
Sbjct: 30  EVIFLCETKKRRNYLENVVGHLGFFDLHTVEPIGKSGGLALMWKDSVQIKVLQSDKRLI- 88

Query: 224 MEVCLKVRNERFLFTAIYASP*KKNRMELWKCLNFIAEAVDLPWMLAGDFNAILEADEKS 45
            +  L  +++ F  T IY  P +  R ELW+ L  +  +   PWML GDFN +++  EK 
Sbjct: 89  -DALLIWQDKEFYLTCIYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKI 147

Query: 44  GGSDNSNKGCAKFK 3
           GG       C +F+
Sbjct: 148 GGPARKESSCLEFR 161


>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
 Frame = -2

Query: 401 LVVLMETRISGVKADTVIKKLGFSGSHRVEANGFAGGIWIL*RDSI-TVNVLLNHVQYVH 225
           ++ L ET   G +     + LGF  S RV+  G +GG+W+L +  +  V ++ +  Q++H
Sbjct: 31  ILALFETHAGGDREQRSCQGLGFENSFRVDVVGQSGGLWLLWKAEVGEVTIVNSSSQFIH 90

Query: 224 MEVCLKVRNERFLFTAIYASP*KKNRMELWKCLNFIAEAVDLPWMLAGDFNAILEADEKS 45
             +   V  E      +YA+P    R  LW+ L  + +A+D P ++ GDFN I+  DE+ 
Sbjct: 91  ARIVNGV--EALHLVTVYAAPSASRRSGLWEKLRDVVQAIDEPLIIGGDFNTIIRTDERI 148

Query: 44  GGS 36
           GG+
Sbjct: 149 GGN 151


>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268308|emb|CAB78602.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 655

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
 Frame = -2

Query: 401 LVVLMETRISGVKADTVIKKLGFSGSHRVEANGFAGGIWIL*RDSI-TVNVLLNHVQYVH 225
           ++ L ET   G +A  + ++LGF    RV+A G + G+W+L R S+  V ++ +  Q++H
Sbjct: 538 VLALFETHAGGDRAGRICQRLGFENQFRVDAVGQSSGLWLLWRSSVGNVEIVSSTSQFIH 597

Query: 224 MEVCLKVRNERFLFTAIYASP*KKNRMELWKCLNFIAEAVDLPWMLAGDFNAILEADEKS 45
            ++   +  E      +YA+P    R  LW  L      +D P ++ GDFN IL  DE++
Sbjct: 598 AKILTGL--ESVHLVVVYAAPSVSRRSGLWNELREAVSGLDGPLIIGGDFNTILRVDERT 655


>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/113 (33%), Positives = 59/113 (52%)
 Frame = -2

Query: 401  LVVLMETRISGVKADTVIKKLGFSGSHRVEANGFAGGIWIL*RDSITVNVLLNHVQYVHM 222
            +V L ETR    K   +  +LG  G   V ++G +GG+ +   +SI V ++  + +Y+  
Sbjct: 686  IVFLSETRQKIEKVRRLRNRLGLRGFAGVNSDGMSGGLALFWHESIHVEIISMNERYIDA 745

Query: 221  EVCLKVRNERFLFTAIYASP*KKNRMELWKCLNFIAEAVDLPWMLAGDFNAIL 63
             V L V    +  T +Y  P  +NR  +W  LN I +  DLPW++ GDFN  L
Sbjct: 746  YVRLSVNAPVWHATFVYGEPRVENRHRMWALLNSIKQVSDLPWLVVGDFNETL 798