BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00041767
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   108   4e-22
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   108   5e-22
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   107   1e-21
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   106   2e-21
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   106   2e-21

>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  108 bits (271), Expect = 4e-22
 Identities = 52/143 (36%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
 Frame = +3

Query: 18  FEDELQY--SDHYRSKLNSSLHCIPKILSTQENIMLEEIPSFEEVREAVFALDPDSSAGP 191
           F+D LQ   +D+    +    + +P   S  ++ +L  + + EE+++ +F++  D S GP
Sbjct: 135 FQDFLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGP 194

Query: 192 DGFTGAFFQSCWDVVGLDVHLAVVNFFCGCELPKAVSATLISLIPKKENPQNFAEYRPIS 371
           DG+T  F+++ W+++G +V +A+ +FF    LPK V++T+++LIPKK+  +   +YRPIS
Sbjct: 195 DGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPIS 254

Query: 372 ICNFSNKILSKLLAKRLEQIFPK 440
            CN   K +SK+LA RL++I PK
Sbjct: 255 CCNVLYKAISKILANRLKRILPK 277


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score =  108 bits (270), Expect = 5e-22
 Identities = 52/127 (40%), Positives = 84/127 (66%)
 Frame = +3

Query: 63  NSSLHCIPKILSTQENIMLEEIPSFEEVREAVFALDPDSSAGPDGFTGAFFQSCWDVVGL 242
           +S+L  +P +++ + N  L ++ S EEV+ A+F+L+PD + GPDG T  F+Q  WD+ G 
Sbjct: 353 DSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGP 412

Query: 243 DVHLAVVNFFCGCELPKAVSATLISLIPKKENPQNFAEYRPISICNFSNKILSKLLAKRL 422
           D+   V NF       + ++ T I LIPK E P+  AE+RPIS+CN S K++SK+L+ RL
Sbjct: 413 DLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRL 472

Query: 423 EQIFPKI 443
           +++ P++
Sbjct: 473 KRLLPEL 479


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  107 bits (266), Expect = 1e-21
 Identities = 53/148 (35%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3    YFKKLFEDELQY-SDHYRSKLNSSLH-CIPKILSTQENIMLEEIPSFEEVREAVFALDPD 176
            Y ++ F + LQ   + Y     + L   +P   S  E+ +L  + + EE+++ +F++  D
Sbjct: 817  YAERFFREFLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPND 876

Query: 177  SSAGPDGFTGAFFQSCWDVVGLDVHLAVVNFFCGCELPKAVSATLISLIPKKENPQNFAE 356
             S GPDGFT  FF++ W+++G +  LA+ +FF    LPK ++ T+++LIPKK+  +   +
Sbjct: 877  KSPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKD 936

Query: 357  YRPISICNFSNKILSKLLAKRLEQIFPK 440
            YRPIS CN   K++SK++A RL+ + PK
Sbjct: 937  YRPISCCNVIYKVISKIIANRLKLVPPK 964


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  106 bits (265), Expect = 2e-21
 Identities = 55/147 (37%), Positives = 89/147 (60%)
 Frame = +3

Query: 3   YFKKLFEDELQYSDHYRSKLNSSLHCIPKILSTQENIMLEEIPSFEEVREAVFALDPDSS 182
           YF+++F  E   SD   S ++ +   I  ++S  +N  L  IP+ EEV++AVF+++   +
Sbjct: 287 YFQQIFTSE---SDGDFSVVDEA---IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKA 340

Query: 183 AGPDGFTGAFFQSCWDVVGLDVHLAVVNFFCGCELPKAVSATLISLIPKKENPQNFAEYR 362
            GPDGFT  F+ S W ++  DV   +  FF     P+ ++ T I LIPK   P+  A+YR
Sbjct: 341 PGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYR 400

Query: 363 PISICNFSNKILSKLLAKRLEQIFPKI 443
           PI++CN   KI++K++ KR++ I PK+
Sbjct: 401 PIALCNIFYKIVAKIMTKRMQLILPKL 427


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  106 bits (264), Expect = 2e-21
 Identities = 47/120 (39%), Positives = 77/120 (64%)
 Frame = +3

Query: 81  IPKILSTQENIMLEEIPSFEEVREAVFALDPDSSAGPDGFTGAFFQSCWDVVGLDVHLAV 260
           +P   S  +  ML    S EE+ + VF++  D S GPDG+T  F++  W+++G +  LA+
Sbjct: 325 LPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAI 384

Query: 261 VNFFCGCELPKAVSATLISLIPKKENPQNFAEYRPISICNFSNKILSKLLAKRLEQIFPK 440
            +FF    LPK +++T+++LIPKK+  +   +YRPIS CN   K++SK++A RL+ + PK
Sbjct: 385 QSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPK 444