BLASTX nr result

ID: Cephaelis21_contig00036221 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00036221
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147091.1| PREDICTED: F-box/LRR-repeat protein At4g2942...    91   1e-16
ref|NP_194671.1| F-box/LRR-repeat protein [Arabidopsis thaliana]...    91   1e-16
dbj|BAC42265.1| unknown protein [Arabidopsis thaliana]                 91   1e-16
ref|XP_002867409.1| F-box family protein [Arabidopsis lyrata sub...    88   6e-16
ref|XP_003532461.1| PREDICTED: F-box/LRR-repeat protein At4g2942...    88   8e-16

>ref|XP_004147091.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Cucumis
           sativus] gi|449503313|ref|XP_004161940.1| PREDICTED:
           F-box/LRR-repeat protein At4g29420-like [Cucumis
           sativus]
          Length = 449

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
 Frame = +3

Query: 3   TRSSVTPFKTIFKNLISELRIVESVSIGVEKPL---HXXXXXXXXXXXXXXXXXVSFLKE 173
           T+  VTPFK I K L++E   ++SVSIGVEK L                     V + KE
Sbjct: 59  TKLLVTPFKVILKTLVNEFLALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGYAKE 118

Query: 174 WLPRVGHGLLSCSISDFWVQSCWRRSDVFCLLSSYCQNLIEL 299
           WLP +G  L S SI DFWVQSCWR+S +  L++ YC NL+EL
Sbjct: 119 WLPSIGKNLTSLSIVDFWVQSCWRQSKILALITLYCCNLLEL 160


>ref|NP_194671.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
           gi|75264516|sp|Q9M0E1.1|FBL77_ARATH RecName:
           Full=F-box/LRR-repeat protein At4g29420
           gi|7269841|emb|CAB79700.1| hypothetical protein
           [Arabidopsis thaliana] gi|109946621|gb|ABG48489.1|
           At4g29420 [Arabidopsis thaliana]
           gi|332660229|gb|AEE85629.1| F-box/LRR-repeat protein
           [Arabidopsis thaliana]
          Length = 446

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
 Frame = +3

Query: 15  VTPFKTIFKNLISELRIVESVSIGVEKPLHXXXXXXXXXXXXXXXXX--VSFLKEWLPRV 188
           VTPFKTIF++LI     + S+S+GV+K L                    V F+KEWLPRV
Sbjct: 60  VTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEWLPRV 119

Query: 189 GHGLLSCSISDFWVQSCWRRSDVFCLLSSYCQNLIEL 299
              L + SISDFW+QSCWR+SD+  L+SS C  L++L
Sbjct: 120 REDLENLSISDFWIQSCWRKSDILALISSNCSKLVKL 156


>dbj|BAC42265.1| unknown protein [Arabidopsis thaliana]
          Length = 446

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
 Frame = +3

Query: 15  VTPFKTIFKNLISELRIVESVSIGVEKPLHXXXXXXXXXXXXXXXXX--VSFLKEWLPRV 188
           VTPFKTIF++LI     + S+S+GV+K L                    V F+KEWLPRV
Sbjct: 60  VTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEWLPRV 119

Query: 189 GHGLLSCSISDFWVQSCWRRSDVFCLLSSYCQNLIEL 299
              L + SISDFW+QSCWR+SD+  L+SS C  L++L
Sbjct: 120 REDLENLSISDFWIQSCWRKSDILALISSNCSKLVKL 156


>ref|XP_002867409.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313245|gb|EFH43668.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 445

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +3

Query: 15  VTPFKTIFKNLISELRIVESVSIGVEKPL--HXXXXXXXXXXXXXXXXXVSFLKEWLPRV 188
           VTPFKTIF++LI     + S+SIGV+K L                    V F KEWLPRV
Sbjct: 60  VTPFKTIFRSLIENSCNIRSISIGVDKALIGMSFDDLNEEDSKDLYLTDVEFAKEWLPRV 119

Query: 189 GHGLLSCSISDFWVQSCWRRSDVFCLLSSYCQNLIEL 299
              L   SISDFW+QSCWR+SD+  L+SS C  L++L
Sbjct: 120 REDLEMLSISDFWIQSCWRKSDILALISSNCSKLVKL 156


>ref|XP_003532461.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Glycine max]
          Length = 453

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = +3

Query: 3   TRSSVTPFKTIFKNLISELRIVESVSIGVEKPLHXXXXXXXXXXXXXXXXX-VSFLKEWL 179
           T+  VTPFKT+  NL+     +ESVS+GV++ L                   ++F++EWL
Sbjct: 62  TKHLVTPFKTVITNLVRRSGNLESVSLGVDRALGGVSFDDVEDEADDLYLTDMNFIREWL 121

Query: 180 PRVGHGLLSCSISDFWVQSCWRRSDVFCLLSSYCQNLIEL 299
           P V   L S S+SDFWVQSCWRRS+   L+SS C+NL++L
Sbjct: 122 PSVSDALKSFSVSDFWVQSCWRRSEALSLISSTCRNLVKL 161


Top